mRNA_P-wetherbeei_contig55678.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79
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Overview
Homology
BLAST of mRNA_P-wetherbeei_contig55678.1.1 vs. uniprot
Match: A0A7W1UVQ8_9ACTN (Nuclear transport factor 2 family protein n=1 Tax=Acidimicrobiia bacterium TaxID=2080302 RepID=A0A7W1UVQ8_9ACTN) HSP 1 Score: 139 bits (349), Expect = 9.560e-40 Identity = 71/122 (58.20%), Postives = 91/122 (74.59%), Query Frame = 1
Query: 34 ETVLRYAEAWQAGDVGTMLGLYAEDFVLHYFGDSPLAGEHIGQAAALEALLAASARTNRTLVAVDDVLSGDVLHAIVARERVGADQREV-RRVLLYRADEHHLTECWLFDEDQRAIDALWSV 396
+TV YA+AW AGD+ +L Y +DFVLHYFG+S LAG+H G+ AA+ AL+AA+ RT R L+ V+DVL+G+ AI+ARE VG D R V RRVL++ + L ECWL+DEDQRAID LWSV
Sbjct: 11 DTVRSYADAWAAGDLVGVLDAYHDDFVLHYFGESDLAGDHEGKDAAVTALVAATERTARRLLEVEDVLAGERFGAIIAREEVGVDDRRVIRRVLVFTVADDQLAECWLYDEDQRAIDQLWSV 132
BLAST of mRNA_P-wetherbeei_contig55678.1.1 vs. uniprot
Match: A0A6I3CCA0_9ACTN (Nuclear transport factor 2 family protein n=2 Tax=root TaxID=1 RepID=A0A6I3CCA0_9ACTN) HSP 1 Score: 131 bits (329), Expect = 9.230e-37 Identity = 68/125 (54.40%), Postives = 84/125 (67.20%), Query Frame = 1
Query: 28 SRETVLRYAEAWQAGDVGTMLGLYAEDFVLHYFGDSPLAGEHIGQAAALEALLAASARTNRTLVAVDDVLSGDVLHAIVARERVGADQREVRRVLLYRADEHHLTECWLFDEDQRAIDALWSVTG 402
+R + YAEAW + D+ +L Y +D LHY G SPLAG H G+ AA AL ASART+R L+ V+DVL GD L A++A E +G + VRRVLLYR + L ECWLFDEDQR ID LWS+ G
Sbjct: 7 TRRVLRAYAEAWLSSDLEKVLASYHDDIELHYMGQSPLAGTHRGRDAAFAALGQASARTSRRLIDVEDVLVGDSLGALIAVEDLGDPAQRVRRVLLYRVQDEKLRECWLFDEDQRFIDQLWSLEG 131
BLAST of mRNA_P-wetherbeei_contig55678.1.1 vs. uniprot
Match: A0A6L6C6Q2_9ACTN (Nuclear transport factor 2 family protein n=2 Tax=root TaxID=1 RepID=A0A6L6C6Q2_9ACTN) HSP 1 Score: 126 bits (317), Expect = 6.120e-35 Identity = 67/125 (53.60%), Postives = 80/125 (64.00%), Query Frame = 1
Query: 28 SRETVLRYAEAWQAGDVGTMLGLYAEDFVLHYFGDSPLAGEHIGQAAALEALLAASARTNRTLVAVDDVLSGDVLHAIVARERVGADQREVRRVLLYRADEHHLTECWLFDEDQRAIDALWSVTG 402
+R + YA AW A D+ +L Y D LHY G SPLAG H+G+ AA AL AS RT R LV V+DVL G+ L A++A E +G + VRRVLLYR + L ECWLFDEDQR ID LWS G
Sbjct: 7 TRRVLRSYAAAWLASDLEAVLDSYHNDIELHYMGTSPLAGTHVGRDAAFVALSQASQRTTRKLVTVEDVLVGNSLGALIAVEDLGDPPQRVRRVLLYRVQDDKLRECWLFDEDQRFIDDLWSKEG 131
BLAST of mRNA_P-wetherbeei_contig55678.1.1 vs. uniprot
Match: A0A4P5RE97_9ACTN (SnoaL-like domain-containing protein n=5 Tax=root TaxID=1 RepID=A0A4P5RE97_9ACTN) HSP 1 Score: 125 bits (315), Expect = 1.230e-34 Identity = 67/122 (54.92%), Postives = 81/122 (66.39%), Query Frame = 1
Query: 40 VLR-YAEAWQAGDVGTMLGLYAEDFVLHYFGDSPLAGEHIGQAAALEALLAASARTNRTLVAVDDVLSGDVLHAIVARERVGADQREVRRVLLYRADEHHLTECWLFDEDQRAIDALWSVTG 402
VLR YA+AW A D+ +L Y ED LHY G+SPLAG H G+ AA L AS RT R L+ V+DVL G+ L A++A E +G + VRRVLLYR + L ECWLFDEDQR ID +WS G
Sbjct: 10 VLRAYAKAWLASDLEKVLASYHEDIELHYMGESPLAGSHRGRDAAFAVLAQASTRTARKLINVEDVLVGESLGALIAVEDLGDPAKRVRRVLLYRVQDEKLRECWLFDEDQRFIDQMWSKEG 131
BLAST of mRNA_P-wetherbeei_contig55678.1.1 vs. uniprot
Match: A0A6I3DR00_9ACTN (Nuclear transport factor 2 family protein n=4 Tax=root TaxID=1 RepID=A0A6I3DR00_9ACTN) HSP 1 Score: 123 bits (309), Expect = 1.090e-33 Identity = 66/119 (55.46%), Postives = 82/119 (68.91%), Query Frame = 1
Query: 40 VLR-YAEAWQAGDVGTMLGLYAEDFVLHYFGDSPLAGEHIGQAAALEALLAASARTNRTLVAVDDVLSGDVLHAIVARERVGADQREVRRVLLYRADEHHLTECWLFDEDQRAIDALWS 393
VLR YA+AW A D+ +L Y +D LHY G+SPLAG H G+ AA L AS RT R L+ V+DVL+G+ L A++A E +G + VRRVLLYR + L ECWLFDE+QR IDALWS
Sbjct: 13 VLRAYAQAWLAADLEKVLASYHDDIELHYMGESPLAGTHRGRDAAFAVLAQASTRTARKLIDVEDVLAGESLGALIAVEDLGDPPQRVRRVLLYRVQDGKLRECWLFDENQRFIDALWS 131
BLAST of mRNA_P-wetherbeei_contig55678.1.1 vs. uniprot
Match: A0A0G3V2A2_9ACTN (SnoaL-like domain n=1 Tax=Actinobacteria bacterium IMCC26256 TaxID=1650658 RepID=A0A0G3V2A2_9ACTN) HSP 1 Score: 120 bits (302), Expect = 1.150e-32 Identity = 62/115 (53.91%), Postives = 76/115 (66.09%), Query Frame = 1
Query: 49 YAEAWQAGDVGTMLGLYAEDFVLHYFGDSPLAGEHIGQAAALEALLAASARTNRTLVAVDDVLSGDVLHAIVARERVGADQREVRRVLLYRADEHHLTECWLFDEDQRAIDALWS 393
YA+AW A D+ +L Y E+ LHY G+SPLAG H G AA L AS T R L+ V+DVL GD L A++A E +G + VRRVLLYR + L ECWLFDEDQR ID++WS
Sbjct: 14 YAKAWLASDLEKVLASYHENIELHYMGESPLAGTHRGLDAAFAVLAKASTSTARKLIDVEDVLVGDSLGALIAVEELGDTAKRVRRVLLYRVQDEKLRECWLFDEDQRFIDSMWS 128
BLAST of mRNA_P-wetherbeei_contig55678.1.1 vs. uniprot
Match: A0A7H0LQ76_9SPHN (Nuclear transport factor 2 family protein n=2 Tax=Sphingomonas alpina TaxID=653931 RepID=A0A7H0LQ76_9SPHN) HSP 1 Score: 118 bits (296), Expect = 1.050e-31 Identity = 61/127 (48.03%), Postives = 85/127 (66.93%), Query Frame = 1
Query: 13 PGAPMSRETVLRYAEAWQAGDVGTMLGLYAEDFVLHYFGDSPLAGEHIGQAAALEALLAASARTNRTLVAVDDVLSGDVLHAIVARERV--GADQREVRRVLLYRADEHHLTECWLFDEDQRAIDAL 387
PG R+ + RYA AW +G++ ++ Y +DF LHYFG S L+G H+G+ AAL+ L A S RT R L+ V ++L+GD L AI+ARE + G EV R+LLYR + L ECW++D+DQR IDA+
Sbjct: 6 PGEAAVRQALARYAAAWTSGNLAAIVTCYHDDFTLHYFGQSALSGTHVGKPAALKTLAAFSQRTRRKLMGVTEILAGDRLGAILAREMLMQGEQPIEVDRLLLYRVADGLLIECWVYDQDQRLIDAI 132
BLAST of mRNA_P-wetherbeei_contig55678.1.1 vs. uniprot
Match: A0A534RXC7_9DELT (Nuclear transport factor 2 family protein n=2 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A534RXC7_9DELT) HSP 1 Score: 118 bits (295), Expect = 1.880e-31 Identity = 61/132 (46.21%), Postives = 83/132 (62.88%), Query Frame = 1
Query: 1 GAVRPGAPMSRETVLRYAEAWQAGDVGTMLGLYAEDFVLHYFGDSPLAGEHIGQAAALEALLAASARTNRTLVAVDDVLSGDVLHAIVARERVGADQR--EVRRVLLYRADEHHLTECWLFDEDQRAIDALW 390
GA+ ++ V RY +AW GD+ ++ Y ++ VLHYFG SPLAGEH G+AAAL L TNR L+A++DVL+ D ++ARER D R E RRVL+YR + + E W++DEDQRA+D W
Sbjct: 8 GALGARRAVNEAVVRRYCDAWSRGDLPAIVDCYHDELVLHYFGRSPLAGEHRGKAAALGVLARVQQLTNRRLLAIEDVLASDDRAVVLARERFERDGRVLEARRVLVYRVRDGRIAEGWIYDEDQRAVDEFW 139
BLAST of mRNA_P-wetherbeei_contig55678.1.1 vs. uniprot
Match: A0A1C3UYY8_9BRAD (SnoaL-like domain-containing protein n=17 Tax=Bradyrhizobiaceae TaxID=41294 RepID=A0A1C3UYY8_9BRAD) HSP 1 Score: 111 bits (278), Expect = 6.290e-29 Identity = 58/121 (47.93%), Postives = 78/121 (64.46%), Query Frame = 1
Query: 31 RETVLRYAEAWQAGDVGTMLGLYAEDFVLHYFGDSPLAGEHIGQAAALEALLAASARTNRTLVAVDDVLSGDVLHAIVARERVGADQR--EVRRVLLYRADEHHLTECWLFDEDQRAIDAL 387
R V RYA AWQAGD + Y ++F+LHY G +PLAG H G+AAAL L + R+NR L+A+DDV++G AI+ARE D R E+ R+L+Y E L+ECW++D DQ +DA
Sbjct: 16 RAAVTRYATAWQAGDRAAIAACYHDEFMLHYAGHNPLAGTHRGKAAALATLAEVARRSNRKLLAIDDVMAGPRRGAILARESFSRDGRTAELERLLVYAVREGLLSECWVYDRDQAVVDAF 136
BLAST of mRNA_P-wetherbeei_contig55678.1.1 vs. uniprot
Match: UPI0014136DE3 (nuclear transport factor 2 family protein n=1 Tax=Caulobacter sp. SLTY TaxID=2683262 RepID=UPI0014136DE3) HSP 1 Score: 110 bits (275), Expect = 1.380e-28 Identity = 56/114 (49.12%), Postives = 77/114 (67.54%), Query Frame = 1
Query: 46 RYAEAWQAGDVGTMLGLYAEDFVLHYFGDSPLAGEHIGQAAALEALLAASARTNRTLVAVDDVLSGDVLHAIVARERVGADQREVRRVLLYRADEHHLTECWLFDEDQRAIDAL 387
RY +AW AGD ++GLYA+DF+LH+ GD+P AG H+G+AAA+ ALL + RT+R LVAV +++ ++ARE + REV RVL+YR D + ECW+ D DQ ID L
Sbjct: 16 RYRDAWAAGDFPGLIGLYADDFILHWHGDNPFAGTHVGKAAAVGALLEFTRRTDRKLVAVTHIMADADRAIMIARESLAG--REVDRVLIYRTDGEKVLECWVLDADQAYIDGL 127 The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig55678.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 22
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-wetherbeei_contig55678.1.1 >prot_P-wetherbeei_contig55678.1.1 ID=prot_P-wetherbeei_contig55678.1.1|Name=mRNA_P-wetherbeei_contig55678.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=127bp MSRETVLRYAEAWQAGDVGTMLGLYAEDFVLHYFGDSPLAGEHIGQAAALback to top mRNA from alignment at P-wetherbeei_contig55678:117..521- Legend: UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-wetherbeei_contig55678.1.1 ID=mRNA_P-wetherbeei_contig55678.1.1|Name=mRNA_P-wetherbeei_contig55678.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=405bp|location=Sequence derived from alignment at P-wetherbeei_contig55678:117..521- (Phaeothamnion wetherbeei SAG_119_79)back to top Coding sequence (CDS) from alignment at P-wetherbeei_contig55678:117..521- >mRNA_P-wetherbeei_contig55678.1.1 ID=mRNA_P-wetherbeei_contig55678.1.1|Name=mRNA_P-wetherbeei_contig55678.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=381bp|location=Sequence derived from alignment at P-wetherbeei_contig55678:117..521- (Phaeothamnion wetherbeei SAG_119_79)back to top |