mRNA_P-wetherbeei_contig55678.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig55678.1.1
Unique NamemRNA_P-wetherbeei_contig55678.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig55678.1.1 vs. uniprot
Match: A0A7W1UVQ8_9ACTN (Nuclear transport factor 2 family protein n=1 Tax=Acidimicrobiia bacterium TaxID=2080302 RepID=A0A7W1UVQ8_9ACTN)

HSP 1 Score: 139 bits (349), Expect = 9.560e-40
Identity = 71/122 (58.20%), Postives = 91/122 (74.59%), Query Frame = 1
Query:   34 ETVLRYAEAWQAGDVGTMLGLYAEDFVLHYFGDSPLAGEHIGQAAALEALLAASARTNRTLVAVDDVLSGDVLHAIVARERVGADQREV-RRVLLYRADEHHLTECWLFDEDQRAIDALWSV 396
            +TV  YA+AW AGD+  +L  Y +DFVLHYFG+S LAG+H G+ AA+ AL+AA+ RT R L+ V+DVL+G+   AI+ARE VG D R V RRVL++   +  L ECWL+DEDQRAID LWSV
Sbjct:   11 DTVRSYADAWAAGDLVGVLDAYHDDFVLHYFGESDLAGDHEGKDAAVTALVAATERTARRLLEVEDVLAGERFGAIIAREEVGVDDRRVIRRVLVFTVADDQLAECWLYDEDQRAIDQLWSV 132          
BLAST of mRNA_P-wetherbeei_contig55678.1.1 vs. uniprot
Match: A0A6I3CCA0_9ACTN (Nuclear transport factor 2 family protein n=2 Tax=root TaxID=1 RepID=A0A6I3CCA0_9ACTN)

HSP 1 Score: 131 bits (329), Expect = 9.230e-37
Identity = 68/125 (54.40%), Postives = 84/125 (67.20%), Query Frame = 1
Query:   28 SRETVLRYAEAWQAGDVGTMLGLYAEDFVLHYFGDSPLAGEHIGQAAALEALLAASARTNRTLVAVDDVLSGDVLHAIVARERVGADQREVRRVLLYRADEHHLTECWLFDEDQRAIDALWSVTG 402
            +R  +  YAEAW + D+  +L  Y +D  LHY G SPLAG H G+ AA  AL  ASART+R L+ V+DVL GD L A++A E +G   + VRRVLLYR  +  L ECWLFDEDQR ID LWS+ G
Sbjct:    7 TRRVLRAYAEAWLSSDLEKVLASYHDDIELHYMGQSPLAGTHRGRDAAFAALGQASARTSRRLIDVEDVLVGDSLGALIAVEDLGDPAQRVRRVLLYRVQDEKLRECWLFDEDQRFIDQLWSLEG 131          
BLAST of mRNA_P-wetherbeei_contig55678.1.1 vs. uniprot
Match: A0A6L6C6Q2_9ACTN (Nuclear transport factor 2 family protein n=2 Tax=root TaxID=1 RepID=A0A6L6C6Q2_9ACTN)

HSP 1 Score: 126 bits (317), Expect = 6.120e-35
Identity = 67/125 (53.60%), Postives = 80/125 (64.00%), Query Frame = 1
Query:   28 SRETVLRYAEAWQAGDVGTMLGLYAEDFVLHYFGDSPLAGEHIGQAAALEALLAASARTNRTLVAVDDVLSGDVLHAIVARERVGADQREVRRVLLYRADEHHLTECWLFDEDQRAIDALWSVTG 402
            +R  +  YA AW A D+  +L  Y  D  LHY G SPLAG H+G+ AA  AL  AS RT R LV V+DVL G+ L A++A E +G   + VRRVLLYR  +  L ECWLFDEDQR ID LWS  G
Sbjct:    7 TRRVLRSYAAAWLASDLEAVLDSYHNDIELHYMGTSPLAGTHVGRDAAFVALSQASQRTTRKLVTVEDVLVGNSLGALIAVEDLGDPPQRVRRVLLYRVQDDKLRECWLFDEDQRFIDDLWSKEG 131          
BLAST of mRNA_P-wetherbeei_contig55678.1.1 vs. uniprot
Match: A0A4P5RE97_9ACTN (SnoaL-like domain-containing protein n=5 Tax=root TaxID=1 RepID=A0A4P5RE97_9ACTN)

HSP 1 Score: 125 bits (315), Expect = 1.230e-34
Identity = 67/122 (54.92%), Postives = 81/122 (66.39%), Query Frame = 1
Query:   40 VLR-YAEAWQAGDVGTMLGLYAEDFVLHYFGDSPLAGEHIGQAAALEALLAASARTNRTLVAVDDVLSGDVLHAIVARERVGADQREVRRVLLYRADEHHLTECWLFDEDQRAIDALWSVTG 402
            VLR YA+AW A D+  +L  Y ED  LHY G+SPLAG H G+ AA   L  AS RT R L+ V+DVL G+ L A++A E +G   + VRRVLLYR  +  L ECWLFDEDQR ID +WS  G
Sbjct:   10 VLRAYAKAWLASDLEKVLASYHEDIELHYMGESPLAGSHRGRDAAFAVLAQASTRTARKLINVEDVLVGESLGALIAVEDLGDPAKRVRRVLLYRVQDEKLRECWLFDEDQRFIDQMWSKEG 131          
BLAST of mRNA_P-wetherbeei_contig55678.1.1 vs. uniprot
Match: A0A6I3DR00_9ACTN (Nuclear transport factor 2 family protein n=4 Tax=root TaxID=1 RepID=A0A6I3DR00_9ACTN)

HSP 1 Score: 123 bits (309), Expect = 1.090e-33
Identity = 66/119 (55.46%), Postives = 82/119 (68.91%), Query Frame = 1
Query:   40 VLR-YAEAWQAGDVGTMLGLYAEDFVLHYFGDSPLAGEHIGQAAALEALLAASARTNRTLVAVDDVLSGDVLHAIVARERVGADQREVRRVLLYRADEHHLTECWLFDEDQRAIDALWS 393
            VLR YA+AW A D+  +L  Y +D  LHY G+SPLAG H G+ AA   L  AS RT R L+ V+DVL+G+ L A++A E +G   + VRRVLLYR  +  L ECWLFDE+QR IDALWS
Sbjct:   13 VLRAYAQAWLAADLEKVLASYHDDIELHYMGESPLAGTHRGRDAAFAVLAQASTRTARKLIDVEDVLAGESLGALIAVEDLGDPPQRVRRVLLYRVQDGKLRECWLFDENQRFIDALWS 131          
BLAST of mRNA_P-wetherbeei_contig55678.1.1 vs. uniprot
Match: A0A0G3V2A2_9ACTN (SnoaL-like domain n=1 Tax=Actinobacteria bacterium IMCC26256 TaxID=1650658 RepID=A0A0G3V2A2_9ACTN)

HSP 1 Score: 120 bits (302), Expect = 1.150e-32
Identity = 62/115 (53.91%), Postives = 76/115 (66.09%), Query Frame = 1
Query:   49 YAEAWQAGDVGTMLGLYAEDFVLHYFGDSPLAGEHIGQAAALEALLAASARTNRTLVAVDDVLSGDVLHAIVARERVGADQREVRRVLLYRADEHHLTECWLFDEDQRAIDALWS 393
            YA+AW A D+  +L  Y E+  LHY G+SPLAG H G  AA   L  AS  T R L+ V+DVL GD L A++A E +G   + VRRVLLYR  +  L ECWLFDEDQR ID++WS
Sbjct:   14 YAKAWLASDLEKVLASYHENIELHYMGESPLAGTHRGLDAAFAVLAKASTSTARKLIDVEDVLVGDSLGALIAVEELGDTAKRVRRVLLYRVQDEKLRECWLFDEDQRFIDSMWS 128          
BLAST of mRNA_P-wetherbeei_contig55678.1.1 vs. uniprot
Match: A0A7H0LQ76_9SPHN (Nuclear transport factor 2 family protein n=2 Tax=Sphingomonas alpina TaxID=653931 RepID=A0A7H0LQ76_9SPHN)

HSP 1 Score: 118 bits (296), Expect = 1.050e-31
Identity = 61/127 (48.03%), Postives = 85/127 (66.93%), Query Frame = 1
Query:   13 PGAPMSRETVLRYAEAWQAGDVGTMLGLYAEDFVLHYFGDSPLAGEHIGQAAALEALLAASARTNRTLVAVDDVLSGDVLHAIVARERV--GADQREVRRVLLYRADEHHLTECWLFDEDQRAIDAL 387
            PG    R+ + RYA AW +G++  ++  Y +DF LHYFG S L+G H+G+ AAL+ L A S RT R L+ V ++L+GD L AI+ARE +  G    EV R+LLYR  +  L ECW++D+DQR IDA+
Sbjct:    6 PGEAAVRQALARYAAAWTSGNLAAIVTCYHDDFTLHYFGQSALSGTHVGKPAALKTLAAFSQRTRRKLMGVTEILAGDRLGAILAREMLMQGEQPIEVDRLLLYRVADGLLIECWVYDQDQRLIDAI 132          
BLAST of mRNA_P-wetherbeei_contig55678.1.1 vs. uniprot
Match: A0A534RXC7_9DELT (Nuclear transport factor 2 family protein n=2 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A534RXC7_9DELT)

HSP 1 Score: 118 bits (295), Expect = 1.880e-31
Identity = 61/132 (46.21%), Postives = 83/132 (62.88%), Query Frame = 1
Query:    1 GAVRPGAPMSRETVLRYAEAWQAGDVGTMLGLYAEDFVLHYFGDSPLAGEHIGQAAALEALLAASARTNRTLVAVDDVLSGDVLHAIVARERVGADQR--EVRRVLLYRADEHHLTECWLFDEDQRAIDALW 390
            GA+     ++   V RY +AW  GD+  ++  Y ++ VLHYFG SPLAGEH G+AAAL  L      TNR L+A++DVL+ D    ++ARER   D R  E RRVL+YR  +  + E W++DEDQRA+D  W
Sbjct:    8 GALGARRAVNEAVVRRYCDAWSRGDLPAIVDCYHDELVLHYFGRSPLAGEHRGKAAALGVLARVQQLTNRRLLAIEDVLASDDRAVVLARERFERDGRVLEARRVLVYRVRDGRIAEGWIYDEDQRAVDEFW 139          
BLAST of mRNA_P-wetherbeei_contig55678.1.1 vs. uniprot
Match: A0A1C3UYY8_9BRAD (SnoaL-like domain-containing protein n=17 Tax=Bradyrhizobiaceae TaxID=41294 RepID=A0A1C3UYY8_9BRAD)

HSP 1 Score: 111 bits (278), Expect = 6.290e-29
Identity = 58/121 (47.93%), Postives = 78/121 (64.46%), Query Frame = 1
Query:   31 RETVLRYAEAWQAGDVGTMLGLYAEDFVLHYFGDSPLAGEHIGQAAALEALLAASARTNRTLVAVDDVLSGDVLHAIVARERVGADQR--EVRRVLLYRADEHHLTECWLFDEDQRAIDAL 387
            R  V RYA AWQAGD   +   Y ++F+LHY G +PLAG H G+AAAL  L   + R+NR L+A+DDV++G    AI+ARE    D R  E+ R+L+Y   E  L+ECW++D DQ  +DA 
Sbjct:   16 RAAVTRYATAWQAGDRAAIAACYHDEFMLHYAGHNPLAGTHRGKAAALATLAEVARRSNRKLLAIDDVMAGPRRGAILARESFSRDGRTAELERLLVYAVREGLLSECWVYDRDQAVVDAF 136          
BLAST of mRNA_P-wetherbeei_contig55678.1.1 vs. uniprot
Match: UPI0014136DE3 (nuclear transport factor 2 family protein n=1 Tax=Caulobacter sp. SLTY TaxID=2683262 RepID=UPI0014136DE3)

HSP 1 Score: 110 bits (275), Expect = 1.380e-28
Identity = 56/114 (49.12%), Postives = 77/114 (67.54%), Query Frame = 1
Query:   46 RYAEAWQAGDVGTMLGLYAEDFVLHYFGDSPLAGEHIGQAAALEALLAASARTNRTLVAVDDVLSGDVLHAIVARERVGADQREVRRVLLYRADEHHLTECWLFDEDQRAIDAL 387
            RY +AW AGD   ++GLYA+DF+LH+ GD+P AG H+G+AAA+ ALL  + RT+R LVAV  +++      ++ARE +    REV RVL+YR D   + ECW+ D DQ  ID L
Sbjct:   16 RYRDAWAAGDFPGLIGLYADDFILHWHGDNPFAGTHVGKAAAVGALLEFTRRTDRKLVAVTHIMADADRAIMIARESLAG--REVDRVLIYRTDGEKVLECWVLDADQAYIDGL 127          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig55678.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 22
Match NameE-valueIdentityDescription
A0A7W1UVQ8_9ACTN9.560e-4058.20Nuclear transport factor 2 family protein n=1 Tax=... [more]
A0A6I3CCA0_9ACTN9.230e-3754.40Nuclear transport factor 2 family protein n=2 Tax=... [more]
A0A6L6C6Q2_9ACTN6.120e-3553.60Nuclear transport factor 2 family protein n=2 Tax=... [more]
A0A4P5RE97_9ACTN1.230e-3454.92SnoaL-like domain-containing protein n=5 Tax=root ... [more]
A0A6I3DR00_9ACTN1.090e-3355.46Nuclear transport factor 2 family protein n=4 Tax=... [more]
A0A0G3V2A2_9ACTN1.150e-3253.91SnoaL-like domain n=1 Tax=Actinobacteria bacterium... [more]
A0A7H0LQ76_9SPHN1.050e-3148.03Nuclear transport factor 2 family protein n=2 Tax=... [more]
A0A534RXC7_9DELT1.880e-3146.21Nuclear transport factor 2 family protein n=2 Tax=... [more]
A0A1C3UYY8_9BRAD6.290e-2947.93SnoaL-like domain-containing protein n=17 Tax=Brad... [more]
UPI0014136DE31.380e-2849.12nuclear transport factor 2 family protein n=1 Tax=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig55678contigP-wetherbeei_contig55678:117..521 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog1038859.AXAU01000001_gene2601
PFAMsSnoaL_2
Model size405
Max annot lvl28211|Alphaproteobacteria
KEGG koko:K06893
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.83e-28
EggNOG OGsCOG3631@1|root,COG3631@2|Bacteria,1N5JT@1224|Proteobacteria,2UDZJ@28211|Alphaproteobacteria,3K4KU@41294|Bradyrhizobiaceae
DescriptionSnoaL-like domain
Cds size381
COG categoryS
BRITEko00000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186828.6856642-CDS-P-wetherbeei_contig55678:116..4971683186828.6856642-CDS-P-wetherbeei_contig55678:116..497Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig55678 117..497 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186828.7040508-UTR-P-wetherbeei_contig55678:497..5211683186828.7040508-UTR-P-wetherbeei_contig55678:497..521Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig55678 498..521 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig55678.1.1prot_P-wetherbeei_contig55678.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig55678 117..497 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig55678.1.1

>prot_P-wetherbeei_contig55678.1.1 ID=prot_P-wetherbeei_contig55678.1.1|Name=mRNA_P-wetherbeei_contig55678.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=127bp
MSRETVLRYAEAWQAGDVGTMLGLYAEDFVLHYFGDSPLAGEHIGQAAAL
EALLAASARTNRTLVAVDDVLSGDVLHAIVARERVGADQREVRRVLLYRA
DEHHLTECWLFDEDQRAIDALWSVTG*
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mRNA from alignment at P-wetherbeei_contig55678:117..521-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig55678.1.1 ID=mRNA_P-wetherbeei_contig55678.1.1|Name=mRNA_P-wetherbeei_contig55678.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=405bp|location=Sequence derived from alignment at P-wetherbeei_contig55678:117..521- (Phaeothamnion wetherbeei SAG_119_79)
GGAGCTGTTCGCCCCGGTGCGCCGATGAGCCGGGAGACGGTCCTGCGCTA CGCCGAGGCGTGGCAGGCGGGCGACGTCGGCACGATGCTCGGGCTGTACG CCGAGGACTTCGTGCTGCACTACTTCGGCGACAGCCCGCTCGCCGGTGAA CACATCGGGCAGGCGGCCGCTCTCGAAGCGCTGCTGGCCGCCAGCGCACG AACCAATCGCACGCTCGTCGCCGTCGACGATGTGCTGAGCGGCGACGTGC TCCACGCAATCGTCGCTCGCGAACGAGTCGGCGCCGACCAGCGAGAGGTG CGTCGCGTACTTCTCTACCGCGCCGACGAGCACCACCTCACGGAGTGCTG GCTGTTCGACGAGGACCAACGAGCGATCGACGCGCTGTGGTCGGTGACAG GCTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig55678:117..521-

>mRNA_P-wetherbeei_contig55678.1.1 ID=mRNA_P-wetherbeei_contig55678.1.1|Name=mRNA_P-wetherbeei_contig55678.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=381bp|location=Sequence derived from alignment at P-wetherbeei_contig55678:117..521- (Phaeothamnion wetherbeei SAG_119_79)
ATGAGCCGGGAGACGGTCCTGCGCTACGCCGAGGCGTGGCAGGCGGGCGA
CGTCGGCACGATGCTCGGGCTGTACGCCGAGGACTTCGTGCTGCACTACT
TCGGCGACAGCCCGCTCGCCGGTGAACACATCGGGCAGGCGGCCGCTCTC
GAAGCGCTGCTGGCCGCCAGCGCACGAACCAATCGCACGCTCGTCGCCGT
CGACGATGTGCTGAGCGGCGACGTGCTCCACGCAATCGTCGCTCGCGAAC
GAGTCGGCGCCGACCAGCGAGAGGTGCGTCGCGTACTTCTCTACCGCGCC
GACGAGCACCACCTCACGGAGTGCTGGCTGTTCGACGAGGACCAACGAGC
GATCGACGCGCTGTGGTCGGTGACAGGCTGA
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