mRNA_P-wetherbeei_contig55657.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig55657.1.1
Unique NamemRNA_P-wetherbeei_contig55657.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig55657.1.1 vs. uniprot
Match: A0A7V9AKK5_9CHLR (ABC transporter ATP-binding protein n=1 Tax=Chloroflexia bacterium TaxID=2448782 RepID=A0A7V9AKK5_9CHLR)

HSP 1 Score: 281 bits (719), Expect = 1.280e-92
Identity = 144/168 (85.71%), Postives = 153/168 (91.07%), Query Frame = 1
Query:   13 ASAPVIEVRGLRKTFGSFVALENLDLTIPRASVGLLGANGAGKTTLIRTLLGLIAPDRGTAKVVGYDTQTQGVHVRERVGYMPEADALPSSTTAADFVGHMAEMSGLPTRAARQRAADVLYQVGLEEERYRLIKGFSTGMRQRVKLAQAIVHDPELVFLDEPTAGMDP 516
            A+ PVIEVRGL K F +FVALEN++L IPRASVGLLGANGAGKTTLIRTLLGL  P+RG+A VVG+DTQTQG  VRE VGYMPEADALP +TTAADFVGHMAEMSGLP RAARQRAADVLYQVGL EERYRLIKGFSTGMRQR KLAQAIVHDP+LVFLDEPTAGMDP
Sbjct:   14 AAPPVIEVRGLDKKFKNFVALENINLVIPRASVGLLGANGAGKTTLIRTLLGLSRPNRGSASVVGFDTQTQGTKVREHVGYMPEADALPMATTAADFVGHMAEMSGLPPRAARQRAADVLYQVGLAEERYRLIKGFSTGMRQRAKLAQAIVHDPDLVFLDEPTAGMDP 181          
BLAST of mRNA_P-wetherbeei_contig55657.1.1 vs. uniprot
Match: A0A7W0AAQ9_9CHLR (ABC transporter ATP-binding protein n=1 Tax=Chloroflexia bacterium TaxID=2448782 RepID=A0A7W0AAQ9_9CHLR)

HSP 1 Score: 280 bits (717), Expect = 2.660e-92
Identity = 146/170 (85.88%), Postives = 153/170 (90.00%), Query Frame = 1
Query:    7 PAASAPVIEVRGLRKTFGSFVALENLDLTIPRASVGLLGANGAGKTTLIRTLLGLIAPDRGTAKVVGYDTQTQGVHVRERVGYMPEADALPSSTTAADFVGHMAEMSGLPTRAARQRAADVLYQVGLEEERYRLIKGFSTGMRQRVKLAQAIVHDPELVFLDEPTAGMDP 516
            PAAS PVIEVRG+ K F  F AL+N+ LTIPR+SVGLLGANGAGKTTLIRTLLGL+ P+ G+A VVGYDTQTQG  VRE VGYMPEADALP STTAADFVGHMAEMSGLPTR ARQRAADV YQVGL EERYRLIKGFSTGMRQRVKLAQAIVHDPELVFLDEPTAGMDP
Sbjct:   14 PAAS-PVIEVRGVTKKFKRFTALDNITLTIPRSSVGLLGANGAGKTTLIRTLLGLVKPNTGSATVVGYDTQTQGTKVREHVGYMPEADALPLSTTAADFVGHMAEMSGLPTRQARQRAADVHYQVGLSEERYRLIKGFSTGMRQRVKLAQAIVHDPELVFLDEPTAGMDP 182          
BLAST of mRNA_P-wetherbeei_contig55657.1.1 vs. uniprot
Match: A0A6J4UT95_9CHLR (Efflux ABC transporter, ATP-binding protein n=1 Tax=uncultured Thermomicrobiales bacterium TaxID=1645740 RepID=A0A6J4UT95_9CHLR)

HSP 1 Score: 266 bits (679), Expect = 1.970e-86
Identity = 131/165 (79.39%), Postives = 146/165 (88.48%), Query Frame = 1
Query:   22 PVIEVRGLRKTFGSFVALENLDLTIPRASVGLLGANGAGKTTLIRTLLGLIAPDRGTAKVVGYDTQTQGVHVRERVGYMPEADALPSSTTAADFVGHMAEMSGLPTRAARQRAADVLYQVGLEEERYRLIKGFSTGMRQRVKLAQAIVHDPELVFLDEPTAGMDP 516
            PV+E RGL K +G  +AL+ LDLTIPRASVGLLGANGAGKTTL+R LLGL  P  G A V+G+DT+ QG+ +RERVGYMPE+D LP  TTAADFVGHMAEMSGLP+RAARQRAADVLYQVGL+EERYRLIKGFSTGM+QRVKLAQAIVHDP+LVFLDEPT GMDP
Sbjct:   23 PVVEARGLEKRYGRHLALDRLDLTIPRASVGLLGANGAGKTTLLRLLLGLAKPSAGQASVLGFDTRHQGIKIRERVGYMPESDCLPPGTTAADFVGHMAEMSGLPSRAARQRAADVLYQVGLDEERYRLIKGFSTGMKQRVKLAQAIVHDPDLVFLDEPTNGMDP 187          
BLAST of mRNA_P-wetherbeei_contig55657.1.1 vs. uniprot
Match: A0A7W0STF4_9CHLR (ABC transporter ATP-binding protein (Fragment) n=1 Tax=Chloroflexia bacterium TaxID=2448782 RepID=A0A7W0STF4_9CHLR)

HSP 1 Score: 258 bits (658), Expect = 6.940e-85
Identity = 133/165 (80.61%), Postives = 141/165 (85.45%), Query Frame = 1
Query:   22 PVIEVRGLRKTFGSFVALENLDLTIPRASVGLLGANGAGKTTLIRTLLGLIAPDRGTAKVVGYDTQTQGVHVRERVGYMPEADALPSSTTAADFVGHMAEMSGLPTRAARQRAADVLYQVGLEEERYRLIKGFSTGMRQRVKLAQAIVHDPELVFLDEPTAGMDP 516
            PVIEVRG+ K F  FVAL+N+ LTIP ASVGLLGANGAGKTTLIRTLLGL  P+ G+A VVG+DTQTQG  VRE VGYMPEADALP STTAADF      MSGLP R ARQRAADVLYQVGL EERYRLIKGFSTGMRQRVKLAQ+IVHDP+LV LDEPTAGMDP
Sbjct:   16 PVIEVRGVTKMFKRFVALDNVTLTIPHASVGLLGANGAGKTTLIRTLLGLSKPNSGSASVVGFDTQTQGTSVREHVGYMPEADALPMSTTAADFXXXXXXMSGLPARQARQRAADVLYQVGLSEERYRLIKGFSTGMRQRVKLAQSIVHDPDLVLLDEPTAGMDP 180          
BLAST of mRNA_P-wetherbeei_contig55657.1.1 vs. uniprot
Match: A0A7W1I696_9CHLR (ABC transporter ATP-binding protein n=1 Tax=Chloroflexia bacterium TaxID=2448782 RepID=A0A7W1I696_9CHLR)

HSP 1 Score: 261 bits (666), Expect = 1.480e-84
Identity = 129/164 (78.66%), Postives = 145/164 (88.41%), Query Frame = 1
Query:   25 VIEVRGLRKTFGSFVALENLDLTIPRASVGLLGANGAGKTTLIRTLLGLIAPDRGTAKVVGYDTQTQGVHVRERVGYMPEADALPSSTTAADFVGHMAEMSGLPTRAARQRAADVLYQVGLEEERYRLIKGFSTGMRQRVKLAQAIVHDPELVFLDEPTAGMDP 516
            V+E RGL K +GSF+AL+ L+LT+PRA+VGLLGANGAGKTTLIR LLGL  PD G A V+G++T+TQ + VR+RVGYMPE+D LP   TAADFV HMAEMSGLPTRAARQRAADVLYQVGL+EERYRLIKGFSTGM+QRVKLAQAIVHDP LVFLDEPT GMDP
Sbjct:   18 VVETRGLLKRYGSFIALDRLNLTVPRAAVGLLGANGAGKTTLIRLLLGLARPDAGDASVLGFNTRTQAIAVRQRVGYMPESDVLPPGATAADFVAHMAEMSGLPTRAARQRAADVLYQVGLDEERYRLIKGFSTGMKQRVKLAQAIVHDPALVFLDEPTNGMDP 181          
BLAST of mRNA_P-wetherbeei_contig55657.1.1 vs. uniprot
Match: A0A7W0KEX3_9CHLR (ABC transporter ATP-binding protein n=2 Tax=Chloroflexia bacterium TaxID=2448782 RepID=A0A7W0KEX3_9CHLR)

HSP 1 Score: 254 bits (649), Expect = 5.070e-82
Identity = 131/165 (79.39%), Postives = 140/165 (84.85%), Query Frame = 1
Query:   22 PVIEVRGLRKTFGSFVALENLDLTIPRASVGLLGANGAGKTTLIRTLLGLIAPDRGTAKVVGYDTQTQGVHVRERVGYMPEADALPSSTTAADFVGHMAEMSGLPTRAARQRAADVLYQVGLEEERYRLIKGFSTGMRQRVKLAQAIVHDPELVFLDEPTAGMDP 516
            PVIEVRG+ K F  F+AL+N+ L+IP ASVGLLGANGAGKTTLIRTLLGL  P+ G+A VVG+DTQTQG  VRE VGYMPEADALP STTAADF      MSGLP R ARQRAADVLYQVGL EERYRLIKGFSTGMRQRVKLAQ+IVHDP LV LDEPTAGMDP
Sbjct:   16 PVIEVRGVTKMFKRFIALDNVTLSIPHASVGLLGANGAGKTTLIRTLLGLSKPNSGSATVVGFDTQTQGTSVREHVGYMPEADALPMSTTAADFXXXXXXMSGLPARQARQRAADVLYQVGLSEERYRLIKGFSTGMRQRVKLAQSIVHDPALVLLDEPTAGMDP 180          
BLAST of mRNA_P-wetherbeei_contig55657.1.1 vs. uniprot
Match: A0A7W0SCA3_9CHLR (ABC transporter ATP-binding protein n=1 Tax=Chloroflexia bacterium TaxID=2448782 RepID=A0A7W0SCA3_9CHLR)

HSP 1 Score: 253 bits (645), Expect = 2.110e-81
Identity = 124/167 (74.25%), Postives = 144/167 (86.23%), Query Frame = 1
Query:   16 SAPVIEVRGLRKTFGSFVALENLDLTIPRASVGLLGANGAGKTTLIRTLLGLIAPDRGTAKVVGYDTQTQGVHVRERVGYMPEADALPSSTTAADFVGHMAEMSGLPTRAARQRAADVLYQVGLEEERYRLIKGFSTGMRQRVKLAQAIVHDPELVFLDEPTAGMDP 516
            +APV+E+ GLRK++   VA +  +L +PRA++GLLGANGAGKTTL+R LLGL  PDRG A+V+G +T+ Q + +RERVGYMPE+D LP  TTAADFVGHMA MSGLP RAARQRA DVLYQVGL+EERYRLIKGFSTGM+QRVKLAQAIVHDPELVFLDEPT GMDP
Sbjct:   10 AAPVVEILGLRKSYRGIVAFDVAELNVPRAAIGLLGANGAGKTTLLRLLLGLSRPDRGAARVLGRNTRGQAIAIRERVGYMPESDCLPPGTTAADFVGHMARMSGLPARAARQRANDVLYQVGLDEERYRLIKGFSTGMKQRVKLAQAIVHDPELVFLDEPTNGMDP 176          
BLAST of mRNA_P-wetherbeei_contig55657.1.1 vs. uniprot
Match: A0A350T0F5_9CHLR (ABC transporter (Fragment) n=2 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A350T0F5_9CHLR)

HSP 1 Score: 243 bits (619), Expect = 1.200e-79
Identity = 121/168 (72.02%), Postives = 140/168 (83.33%), Query Frame = 1
Query:   13 ASAPVIEVRGLRKTFGSFVALENLDLTIPRASVGLLGANGAGKTTLIRTLLGLIAPDRGTAKVVGYDTQTQGVHVRERVGYMPEADALPSSTTAADFVGHMAEMSGLPTRAARQRAADVLYQVGLEEERYRLIKGFSTGMRQRVKLAQAIVHDPELVFLDEPTAGMDP 516
            A  P+IE   L K +GS VAL+ LD++IP+A+VGLLGANGAGK+TLI+ LLGLI P  G+A ++G +      HVRERVGYMPE+D LP+  TAADFV HMAEMSGLP RAARQRA DVLYQVGL+EERYRLI+GFSTGM+QRVKLAQAIVHDP+LVFLDEPT GMDP
Sbjct:    4 AGQPMIETAALTKRYGSIVALDGLDISIPQAAVGLLGANGAGKSTLIKLLLGLIQPTSGSATMLGMNATRDAAHVRERVGYMPESDCLPADVTAADFVAHMAEMSGLPQRAARQRANDVLYQVGLDEERYRLIRGFSTGMKQRVKLAQAIVHDPQLVFLDEPTNGMDP 171          
BLAST of mRNA_P-wetherbeei_contig55657.1.1 vs. uniprot
Match: A0A7V8WS73_9CHLR (ABC transporter ATP-binding protein n=1 Tax=Chloroflexia bacterium TaxID=2448782 RepID=A0A7V8WS73_9CHLR)

HSP 1 Score: 244 bits (624), Expect = 4.450e-78
Identity = 126/166 (75.90%), Postives = 136/166 (81.93%), Query Frame = 1
Query:   19 APVIEVRGLRKTFGSFVALENLDLTIPRASVGLLGANGAGKTTLIRTLLGLIAPDRGTAKVVGYDTQTQGVHVRERVGYMPEADALPSSTTAADFVGHMAEMSGLPTRAARQRAADVLYQVGLEEERYRLIKGFSTGMRQRVKLAQAIVHDPELVFLDEPTAGMDP 516
            AP+IEV GLRKT+ S VAL+ +DLT+PRA++GLLGANGAGKTTLIRTLLGL  PDRG A+VVG DT+TQGV VRE VGYMPEADALP                  P RAARQRAADVLYQVGL EERYRLIKGFSTGMRQRVKLAQAIVHDP+LVFLDEPTAGMDP
Sbjct:   27 APIIEVHGLRKTYRSVVALDGIDLTLPRAAIGLLGANGAGKTTLIRTLLGLARPDRGNARVVGLDTRTQGVQVREHVGYMPEADALPXXXXXXXXXXXXXXXXXXPARAARQRAADVLYQVGLGEERYRLIKGFSTGMRQRVKLAQAIVHDPQLVFLDEPTAGMDP 192          
BLAST of mRNA_P-wetherbeei_contig55657.1.1 vs. uniprot
Match: A0A7V9VG11_9CHLR (ABC transporter ATP-binding protein n=2 Tax=Chloroflexia bacterium TaxID=2448782 RepID=A0A7V9VG11_9CHLR)

HSP 1 Score: 244 bits (622), Expect = 4.870e-78
Identity = 123/165 (74.55%), Postives = 141/165 (85.45%), Query Frame = 1
Query:   22 PVIEVRGLRKTFGSFVALENLDLTIPRASVGLLGANGAGKTTLIRTLLGLIAPDRGTAKVVGYDTQTQGVHVRERVGYMPEADALPSSTTAADFVGHMAEMSGLPTRAARQRAADVLYQVGLEEERYRLIKGFSTGMRQRVKLAQAIVHDPELVFLDEPTAGMDP 516
            P I+VRGLRK+FGSFVAL+++ LT+PRA+VGLLGANGAGKTTLIRTLLGLI+PD G+A VVG+DT+ +G  VRE VGYMPEA+ LP++TTAA              RAARQRAADVLYQVGL EERYRLIKGFSTGMRQRVKLAQAIVHDP+L+FLDEPT+GMDP
Sbjct:    8 PAIDVRGLRKSFGSFVALDDIRLTVPRAAVGLLGANGAGKTTLIRTLLGLISPDSGSASVVGFDTRAEGTKVREFVGYMPEAEGLPTNTTAAXXXXXXXXXXXXXPRAARQRAADVLYQVGLAEERYRLIKGFSTGMRQRVKLAQAIVHDPKLIFLDEPTSGMDP 172          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig55657.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7V9AKK5_9CHLR1.280e-9285.71ABC transporter ATP-binding protein n=1 Tax=Chloro... [more]
A0A7W0AAQ9_9CHLR2.660e-9285.88ABC transporter ATP-binding protein n=1 Tax=Chloro... [more]
A0A6J4UT95_9CHLR1.970e-8679.39Efflux ABC transporter, ATP-binding protein n=1 Ta... [more]
A0A7W0STF4_9CHLR6.940e-8580.61ABC transporter ATP-binding protein (Fragment) n=1... [more]
A0A7W1I696_9CHLR1.480e-8478.66ABC transporter ATP-binding protein n=1 Tax=Chloro... [more]
A0A7W0KEX3_9CHLR5.070e-8279.39ABC transporter ATP-binding protein n=2 Tax=Chloro... [more]
A0A7W0SCA3_9CHLR2.110e-8174.25ABC transporter ATP-binding protein n=1 Tax=Chloro... [more]
A0A350T0F5_9CHLR1.200e-7972.02ABC transporter (Fragment) n=2 Tax=Chloroflexi bac... [more]
A0A7V8WS73_9CHLR4.450e-7875.90ABC transporter ATP-binding protein n=1 Tax=Chloro... [more]
A0A7V9VG11_9CHLR4.870e-7874.55ABC transporter ATP-binding protein n=2 Tax=Chloro... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig55657contigP-wetherbeei_contig55657:6..521 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog479434.Sthe_1083
PFAMsABC_tran
Model size516
Max annot lvl2|Bacteria
KEGG koko:K01990
KEGG TC3.A.1
KEGG ModuleM00254
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.84e-74
EggNOG OGsCOG1131@1|root,COG1131@2|Bacteria,2G69S@200795|Chloroflexi,27XTG@189775|Thermomicrobia
DescriptionATPases associated with a variety of cellular activities
Cds size516
COG categoryV
BRITEko00000,ko00002,ko02000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186828.507787-CDS-P-wetherbeei_contig55657:5..5211683186828.507787-CDS-P-wetherbeei_contig55657:5..521Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig55657 6..521 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig55657.1.1prot_P-wetherbeei_contig55657.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig55657 6..521 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig55657.1.1

>prot_P-wetherbeei_contig55657.1.1 ID=prot_P-wetherbeei_contig55657.1.1|Name=mRNA_P-wetherbeei_contig55657.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=172bp
AGPAASAPVIEVRGLRKTFGSFVALENLDLTIPRASVGLLGANGAGKTTL
IRTLLGLIAPDRGTAKVVGYDTQTQGVHVRERVGYMPEADALPSSTTAAD
FVGHMAEMSGLPTRAARQRAADVLYQVGLEEERYRLIKGFSTGMRQRVKL
AQAIVHDPELVFLDEPTAGMDP
back to top

mRNA from alignment at P-wetherbeei_contig55657:6..521+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig55657.1.1 ID=mRNA_P-wetherbeei_contig55657.1.1|Name=mRNA_P-wetherbeei_contig55657.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=516bp|location=Sequence derived from alignment at P-wetherbeei_contig55657:6..521+ (Phaeothamnion wetherbeei SAG_119_79)
GCCGGGCCGGCCGCCTCCGCGCCCGTGATCGAGGTCCGCGGCCTTCGCAA GACCTTCGGCTCCTTCGTTGCCCTGGAGAACCTCGACCTGACGATTCCGC GCGCCTCCGTGGGGCTGCTGGGCGCGAACGGCGCGGGCAAGACGACGCTG ATCCGCACGCTGCTGGGGCTGATCGCGCCGGATCGCGGCACGGCGAAGGT CGTCGGCTACGACACGCAGACGCAGGGCGTCCACGTCCGCGAGCGTGTCG GCTACATGCCGGAGGCGGATGCCCTGCCGTCGTCCACCACGGCGGCGGAT TTCGTCGGCCACATGGCGGAGATGAGCGGCCTGCCCACGCGGGCGGCCCG CCAGCGCGCGGCGGACGTCCTCTACCAGGTCGGCCTGGAGGAGGAGCGCT ACCGCCTCATCAAGGGTTTCTCCACCGGCATGCGCCAGCGGGTGAAGCTC GCCCAGGCCATCGTCCACGATCCGGAGCTGGTCTTCCTCGACGAACCGAC CGCGGGTATGGACCCG
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig55657:6..521+

>mRNA_P-wetherbeei_contig55657.1.1 ID=mRNA_P-wetherbeei_contig55657.1.1|Name=mRNA_P-wetherbeei_contig55657.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=516bp|location=Sequence derived from alignment at P-wetherbeei_contig55657:6..521+ (Phaeothamnion wetherbeei SAG_119_79)
GCCGGGCCGGCCGCCTCCGCGCCCGTGATCGAGGTCCGCGGCCTTCGCAA
GACCTTCGGCTCCTTCGTTGCCCTGGAGAACCTCGACCTGACGATTCCGC
GCGCCTCCGTGGGGCTGCTGGGCGCGAACGGCGCGGGCAAGACGACGCTG
ATCCGCACGCTGCTGGGGCTGATCGCGCCGGATCGCGGCACGGCGAAGGT
CGTCGGCTACGACACGCAGACGCAGGGCGTCCACGTCCGCGAGCGTGTCG
GCTACATGCCGGAGGCGGATGCCCTGCCGTCGTCCACCACGGCGGCGGAT
TTCGTCGGCCACATGGCGGAGATGAGCGGCCTGCCCACGCGGGCGGCCCG
CCAGCGCGCGGCGGACGTCCTCTACCAGGTCGGCCTGGAGGAGGAGCGCT
ACCGCCTCATCAAGGGTTTCTCCACCGGCATGCGCCAGCGGGTGAAGCTC
GCCCAGGCCATCGTCCACGATCCGGAGCTGGTCTTCCTCGACGAACCGAC
CGCGGGTATGGACCCG
back to top