mRNA_P-wetherbeei_contig55653.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig55653.1.1
Unique NamemRNA_P-wetherbeei_contig55653.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig55653.1.1 vs. uniprot
Match: A0A835XE31_9ARCH (Putative Peptidylamidoglycolate lyase (Fragment) n=1 Tax=Nitrosopumilales archaeon TaxID=2026768 RepID=A0A835XE31_9ARCH)

HSP 1 Score: 68.9 bits (167), Expect = 1.570e-11
Identity = 31/66 (46.97%), Postives = 44/66 (66.67%), Query Frame = 1
Query:    1 GNGIGELKSPAGLAFDRDGNVYVTEIGNNRVQVFDKSGVSIAMWGSKGSGEGEFGNLHGIIVDKTT 198
            GN  GE  +P  +A D +GNVYVT++GN RVQ F+  G  +  WGS GSG G+F ++ GI +D+ +
Sbjct:   41 GNRNGEFFNPQNIAIDSEGNVYVTDLGNRRVQQFNNDGTFLKAWGSVGSGAGQFHSVSGIAIDENS 106          
BLAST of mRNA_P-wetherbeei_contig55653.1.1 vs. uniprot
Match: A0A3M6KEF0_9ARCH (Uncharacterized protein n=1 Tax=Candidatus Nitrosopelagicus sp. TaxID=2026808 RepID=A0A3M6KEF0_9ARCH)

HSP 1 Score: 65.9 bits (159), Expect = 1.670e-11
Identity = 31/58 (53.45%), Postives = 40/58 (68.97%), Query Frame = 1
Query:   13 GELKSPAGLAFDRDGNVYVTEIGNNRVQVFDKSGVSIAMWGSKGSGEGEFGNLHGIIV 186
            G   SP  LAFD + NVYVT++GN+RVQ FD SG  +  WG++G+  GEFG+  GI V
Sbjct:   44 GSFLSPQHLAFDSENNVYVTDLGNSRVQKFDSSGEFLTEWGTRGTDNGEFGHPMGIAV 101          
BLAST of mRNA_P-wetherbeei_contig55653.1.1 vs. uniprot
Match: UPI0011B1F09C (HYR domain-containing protein n=1 Tax=Candidatus Nitrosopelagicus brevis TaxID=1410606 RepID=UPI0011B1F09C)

HSP 1 Score: 65.1 bits (157), Expect = 3.780e-10
Identity = 31/58 (53.45%), Postives = 41/58 (70.69%), Query Frame = 1
Query:   13 GELKSPAGLAFDRDGNVYVTEIGNNRVQVFDKSGVSIAMWGSKGSGEGEFGNLHGIIV 186
            G   SP  LAFD + NVYVT++GN+RVQ FD +G  +  WG++GS +GEFG+  GI V
Sbjct:   45 GFFLSPQHLAFDSENNVYVTDLGNSRVQKFDSTGNFLIEWGNRGSSDGEFGHPTGIAV 102          
BLAST of mRNA_P-wetherbeei_contig55653.1.1 vs. uniprot
Match: A0A0A7V2H5_9ARCH (HYR domain protein n=2 Tax=Candidatus Nitrosopelagicus brevis TaxID=1410606 RepID=A0A0A7V2H5_9ARCH)

HSP 1 Score: 65.1 bits (157), Expect = 3.850e-10
Identity = 31/58 (53.45%), Postives = 41/58 (70.69%), Query Frame = 1
Query:   13 GELKSPAGLAFDRDGNVYVTEIGNNRVQVFDKSGVSIAMWGSKGSGEGEFGNLHGIIV 186
            G   SP  LAFD + NVYVT++GN+RVQ FD +G  +  WG++GS +GEFG+  GI V
Sbjct:   35 GFFLSPQHLAFDSENNVYVTDLGNSRVQKFDSTGNFLIEWGNRGSSDGEFGHPTGIAV 92          
BLAST of mRNA_P-wetherbeei_contig55653.1.1 vs. uniprot
Match: A0A432KCT2_9CHLR (6-bladed beta-propeller (Fragment) n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A432KCT2_9CHLR)

HSP 1 Score: 60.5 bits (145), Expect = 4.550e-10
Identity = 26/45 (57.78%), Postives = 34/45 (75.56%), Query Frame = 1
Query:   28 PAGLAFDRDGNVYVTEIGNNRVQVFDKSGVSIAMWGSKGSGEGEF 162
            P GLA D DGNVYV+E GN+R+QVF + G  +  WG +G+G+GEF
Sbjct:    3 PQGLAIDSDGNVYVSEYGNDRIQVFGRQGRFLRKWGREGNGDGEF 47          
BLAST of mRNA_P-wetherbeei_contig55653.1.1 vs. uniprot
Match: A0A075HN48_9ARCH (Outer membrane phospholipase A n=1 Tax=uncultured marine thaumarchaeote KM3_74_G04 TaxID=1456274 RepID=A0A075HN48_9ARCH)

HSP 1 Score: 63.5 bits (153), Expect = 1.340e-9
Identity = 30/58 (51.72%), Postives = 40/58 (68.97%), Query Frame = 1
Query:   13 GELKSPAGLAFDRDGNVYVTEIGNNRVQVFDKSGVSIAMWGSKGSGEGEFGNLHGIIV 186
            G   SP  LAFD + NVYVT++GN+RVQ FD +G  +  WG++G+  GEFG+  GI V
Sbjct:   45 GFFLSPQHLAFDSENNVYVTDLGNSRVQKFDSTGNFLTEWGNRGTNSGEFGHPTGIAV 102          
BLAST of mRNA_P-wetherbeei_contig55653.1.1 vs. uniprot
Match: A0A2E7RQC6_9ARCH (Uncharacterized protein (Fragment) n=1 Tax=Candidatus Nitrosopelagicus sp. TaxID=2026808 RepID=A0A2E7RQC6_9ARCH)

HSP 1 Score: 63.2 bits (152), Expect = 1.700e-9
Identity = 28/58 (48.28%), Postives = 40/58 (68.97%), Query Frame = 1
Query:   13 GELKSPAGLAFDRDGNVYVTEIGNNRVQVFDKSGVSIAMWGSKGSGEGEFGNLHGIIV 186
            G   SP  LA D + NVYVT++GN+RVQ F+ +G  +  WG++GS +GEFG+  GI +
Sbjct:   35 GSFLSPQNLAIDSENNVYVTDLGNSRVQKFNSTGEFLTEWGTRGSNDGEFGHPTGIAI 92          
BLAST of mRNA_P-wetherbeei_contig55653.1.1 vs. uniprot
Match: A0A3C1JR77_9CHLR (Uncharacterized protein (Fragment) n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A3C1JR77_9CHLR)

HSP 1 Score: 60.1 bits (144), Expect = 1.980e-9
Identity = 33/79 (41.77%), Postives = 41/79 (51.90%), Query Frame = 1
Query:    1 GNGIGELKSPAGLAFDRDGNVYVTEIGNNRVQVFDKSGVSIAMWG----------------SKGSGEGEFGNLHGIIVD 189
            G G  E + PAG+AF RDG +YV + G NRVQ  D  G  +A WG                + G+G GEF + HGI VD
Sbjct:   27 GTGSDEFRRPAGVAFGRDGEIYVADAGLNRVQKLDPDGRPVASWGRPCGVSCVPGMDAFEVTAGNGIGEFSDPHGIAVD 105          
BLAST of mRNA_P-wetherbeei_contig55653.1.1 vs. uniprot
Match: A0A533UIT5_9ARCH (6-bladed beta-propeller (Fragment) n=1 Tax=Thaumarchaeota archaeon TaxID=2026795 RepID=A0A533UIT5_9ARCH)

HSP 1 Score: 62.4 bits (150), Expect = 2.850e-9
Identity = 28/63 (44.44%), Postives = 41/63 (65.08%), Query Frame = 1
Query:   10 IGELKSPAGLAFDRDGNVYVTEIGNNRVQVFDKSGVSIAMWGSKGSGEGEFGNLHGIIVDKTT 198
            +G+   P G+A D  GNVYVT++GN RV+ FD +G  +  WG+KGSG G+F    GI + + +
Sbjct:   44 LGQFAFPQGIAIDSSGNVYVTDLGNRRVEKFDFNGNFLDTWGTKGSGNGQFEAPTGIAIHENS 106          
BLAST of mRNA_P-wetherbeei_contig55653.1.1 vs. uniprot
Match: A0A533UCY4_9ARCH (HYR domain-containing protein (Fragment) n=1 Tax=Thaumarchaeota archaeon TaxID=2026795 RepID=A0A533UCY4_9ARCH)

HSP 1 Score: 62.4 bits (150), Expect = 3.290e-9
Identity = 28/63 (44.44%), Postives = 41/63 (65.08%), Query Frame = 1
Query:   10 IGELKSPAGLAFDRDGNVYVTEIGNNRVQVFDKSGVSIAMWGSKGSGEGEFGNLHGIIVDKTT 198
            +G+   P G+A D  GNVYVT++GN RV+ FD +G  +  WG+KGSG G+F    GI + + +
Sbjct:   44 LGQFAFPQGIAIDSSGNVYVTDLGNRRVEKFDFNGNFLDTWGTKGSGNGQFEAPTGIAIHENS 106          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig55653.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835XE31_9ARCH1.570e-1146.97Putative Peptidylamidoglycolate lyase (Fragment) n... [more]
A0A3M6KEF0_9ARCH1.670e-1153.45Uncharacterized protein n=1 Tax=Candidatus Nitroso... [more]
UPI0011B1F09C3.780e-1053.45HYR domain-containing protein n=1 Tax=Candidatus N... [more]
A0A0A7V2H5_9ARCH3.850e-1053.45HYR domain protein n=2 Tax=Candidatus Nitrosopelag... [more]
A0A432KCT2_9CHLR4.550e-1057.786-bladed beta-propeller (Fragment) n=1 Tax=Chlorof... [more]
A0A075HN48_9ARCH1.340e-951.72Outer membrane phospholipase A n=1 Tax=uncultured ... [more]
A0A2E7RQC6_9ARCH1.700e-948.28Uncharacterized protein (Fragment) n=1 Tax=Candida... [more]
A0A3C1JR77_9CHLR1.980e-941.77Uncharacterized protein (Fragment) n=1 Tax=Chlorof... [more]
A0A533UIT5_9ARCH2.850e-944.446-bladed beta-propeller (Fragment) n=1 Tax=Thaumar... [more]
A0A533UCY4_9ARCH3.290e-944.44HYR domain-containing protein (Fragment) n=1 Tax=T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig55653contigP-wetherbeei_contig55653:20..316 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog330214.NIDE1420
PFAMsDUF5128,NHL,PA14
Model size297
Max annot lvl2|Bacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.7e-08
EggNOG OGsCOG3391@1|root,COG3391@2|Bacteria
Descriptionamine dehydrogenase activity
Cds size297
COG categoryCO
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186828.4339662-CDS-P-wetherbeei_contig55653:19..3161683186828.4339662-CDS-P-wetherbeei_contig55653:19..316Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig55653 20..316 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig55653.1.1prot_P-wetherbeei_contig55653.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig55653 20..316 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig55653.1.1

>prot_P-wetherbeei_contig55653.1.1 ID=prot_P-wetherbeei_contig55653.1.1|Name=mRNA_P-wetherbeei_contig55653.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=99bp
GNGIGELKSPAGLAFDRDGNVYVTEIGNNRVQVFDKSGVSIAMWGSKGSG
EGEFGNLHGIIVDKTTGHVYVADTANNRIQVFRPAGAVSTTGSGASRP*
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mRNA from alignment at P-wetherbeei_contig55653:20..316+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig55653.1.1 ID=mRNA_P-wetherbeei_contig55653.1.1|Name=mRNA_P-wetherbeei_contig55653.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=297bp|location=Sequence derived from alignment at P-wetherbeei_contig55653:20..316+ (Phaeothamnion wetherbeei SAG_119_79)
GGCAACGGCATCGGCGAATTGAAGTCGCCCGCGGGCCTTGCCTTCGACCG GGACGGCAACGTCTATGTGACCGAGATTGGCAACAACCGCGTTCAGGTGT TCGACAAGAGCGGCGTTTCGATTGCGATGTGGGGCAGCAAGGGCTCGGGC GAAGGCGAGTTCGGCAATCTGCACGGCATCATCGTCGACAAGACCACCGG CCATGTTTACGTCGCCGACACTGCCAACAATCGCATTCAGGTGTTCAGGC CGGCCGGAGCAGTGTCGACCACCGGTTCCGGCGCTTCACGGCCCTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig55653:20..316+

>mRNA_P-wetherbeei_contig55653.1.1 ID=mRNA_P-wetherbeei_contig55653.1.1|Name=mRNA_P-wetherbeei_contig55653.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=297bp|location=Sequence derived from alignment at P-wetherbeei_contig55653:20..316+ (Phaeothamnion wetherbeei SAG_119_79)
GGCAACGGCATCGGCGAATTGAAGTCGCCCGCGGGCCTTGCCTTCGACCG
GGACGGCAACGTCTATGTGACCGAGATTGGCAACAACCGCGTTCAGGTGT
TCGACAAGAGCGGCGTTTCGATTGCGATGTGGGGCAGCAAGGGCTCGGGC
GAAGGCGAGTTCGGCAATCTGCACGGCATCATCGTCGACAAGACCACCGG
CCATGTTTACGTCGCCGACACTGCCAACAATCGCATTCAGGTGTTCAGGC
CGGCCGGAGCAGTGTCGACCACCGGTTCCGGCGCTTCACGGCCCTGA
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