mRNA_P-wetherbeei_contig5565.1.2 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig5565.1.2
Unique NamemRNA_P-wetherbeei_contig5565.1.2
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig5565.1.2 vs. uniprot
Match: A0A836C7G5_9STRA (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C7G5_9STRA)

HSP 1 Score: 140 bits (352), Expect = 1.120e-38
Identity = 63/126 (50.00%), Postives = 88/126 (69.84%), Query Frame = 1
Query:    1 MALPRTGPPLQEMPPSGGYPQFDVRSRIRSRGPPGWALFLGSTLVVSYGFYKLMDGNTKRGMDKLEKREARVAIVPLLQAEADVSAVRRQRALLKEEEEIMGHIPGWKVGESVYKTGVWVPKTFDI 378
            MA+PR   P Q+MPP GGYP+  +     +RGPPGWA++ G+   V YGFY L++GN +R     EKREAR+ I   LQA+AD   +R QR  ++EEEEIMGH+P WKVG++VYK+G+++  T ++
Sbjct:    1 MAMPRNEIPYQDMPPRGGYPKITIARHTPTRGPPGWAIWAGAAAFVGYGFYGLINGNKRRNAMAREKREARMNIQAFLQADADAQHIRVQRRFMREEEEIMGHVPNWKVGDTVYKSGIYMAPTINL 126          
BLAST of mRNA_P-wetherbeei_contig5565.1.2 vs. uniprot
Match: W7U770_9STRA (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U770_9STRA)

HSP 1 Score: 136 bits (342), Expect = 3.280e-37
Identity = 65/122 (53.28%), Postives = 89/122 (72.95%), Query Frame = 1
Query:    1 MALPRTGPPLQEMPPSGGYPQFDVRSRIRSRGPPGWALFLGSTLVVSYGFYKLMDGNTKRGMDKLEKREARVAIVPLLQAEADVSAVRRQRALLKEEEEIMGHIPGWKVGESVYKTGV-WVP 363
            MA P  GPP+Q++PP GGYP+   ++R+ +RGPP WA++ G+ LVVSYGF ++   NT+R     +KRE ++A+ PLLQA+ D+  + RQ+  L EE EIM H+PGWKVGESVYKT V W+P
Sbjct:    1 MATPIGGPPVQDIPPPGGYPKIFYKTRLGNRGPPSWAIWTGAILVVSYGFVQVGRTNTERRFWSDQKREQKLALAPLLQADEDMIWIERQKKALAEEAEIMKHVPGWKVGESVYKTNVTWIP 122          
BLAST of mRNA_P-wetherbeei_contig5565.1.2 vs. uniprot
Match: A0A1Z5KQQ9_FISSO (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13 n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KQQ9_FISSO)

HSP 1 Score: 124 bits (312), Expect = 1.160e-32
Identity = 57/115 (49.57%), Postives = 84/115 (73.04%), Query Frame = 1
Query:   22 PPLQEMPPSGGYPQFDVRSRIRSRGPPGWALFLGSTLVVSYGFYKLMDGNTKRGMDKLEKREARVAIVPLLQAEADVSAVRRQRALLKEEEEIMGHIPGWKVGESVYKTGVWVPK 366
            PP+Q+MPP GG+P+ D+  R R+RGP G  ++L S+L ++YGFY++   N  R  +KLE+R+AR A+  LLQAE D   V+R++ ++K+E EIM ++PGWKVGES Y +  WVP+
Sbjct:    9 PPIQDMPPPGGFPEIDIVKRARARGPTGAQIWLASSLAIAYGFYRVGKCNKARNGEKLEERKARYAMASLLQAEEDRFYVQREQEIMKKEAEIMKNVPGWKVGESPYSSDRWVPR 123          
BLAST of mRNA_P-wetherbeei_contig5565.1.2 vs. uniprot
Match: A0A7S1FYH9_9STRA (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13 n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1FYH9_9STRA)

HSP 1 Score: 118 bits (296), Expect = 3.550e-30
Identity = 56/119 (47.06%), Postives = 78/119 (65.55%), Query Frame = 1
Query:   10 PRTGPPLQEMPPSGGYPQFDVRSRIRSRGPPGWALFLGSTLVVSYGFYKLMDGNTKRGMDKLEKREARVAIVPLLQAEADVSAVRRQRALLKEEEEIMGHIPGWKVGESVYKTGVWVPK 366
            P  GP +Q+MPP GGYP+      + +RGPPGWAL+ G+ L++SYGFY++  GN +R  +K+     R  +V  LQAE D    +R+  LL+ E EIM  + GWKVGES Y +GVW+P+
Sbjct:    6 PNIGPFVQDMPPKGGYPKIRTARHLPNRGPPGWALWSGTALLISYGFYQVGQGNQRRTREKMAILRQREEMVAELQAETDQEYAKREAKLLQVEAEIMKDVKGWKVGESPYFSGVWMPR 124          
BLAST of mRNA_P-wetherbeei_contig5565.1.2 vs. uniprot
Match: A0A7S3NKY2_9STRA (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13 n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3NKY2_9STRA)

HSP 1 Score: 113 bits (283), Expect = 6.840e-28
Identity = 55/116 (47.41%), Postives = 77/116 (66.38%), Query Frame = 1
Query:   25 PLQEMPPSGGYPQFDVRSRIRSRGPPGWALFLGSTLVVSYGFYKLMDGNTKRGMDKLEKREARVAIVPLLQAEADVSAVRRQRALLKEEEEIMGHIPGWKVGESVYKT-GVWVPKT 369
            P+Q+MPP GGYP+  V +   SRGPPGWAL+LG+ + +S+G+Y++  GN +R   K EKR AR++  P LQAE DV       + +++E +IM  + GWKVGESVY     W+P T
Sbjct:   41 PIQDMPPEGGYPKITVANENVSRGPPGWALWLGAVVTISFGYYQVGMGNRQRNAAKREKRCARLSFAPYLQAEEDVRYHAHLTSKIEDEAKIMNGVKGWKVGESVYNNRDHWIPPT 156          
BLAST of mRNA_P-wetherbeei_contig5565.1.2 vs. uniprot
Match: A0A7S3Q271_9STRA (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13 n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3Q271_9STRA)

HSP 1 Score: 112 bits (279), Expect = 1.010e-27
Identity = 53/122 (43.44%), Postives = 78/122 (63.93%), Query Frame = 1
Query:   10 PRTGPPLQEMPPSGGYPQFDVRSRIRSRGPPGWALFLGSTLVVSYGFYKLMDGNTKRGMDKLEKREARVAIVPLLQAEADVSAVRRQRALLKEEEEIMGHIPGWKVGESVYKTGVWVPKTFD 375
            P   PPLQ++ P GG+ + DV     +RGP GW L+ GS + + YGFY++   N +    K  +REAR A+ P+LQAEAD + + R+  LL++E EIM  + GW+VG+S Y +G W P+T +
Sbjct:    5 PNNLPPLQDVAPKGGFAKVDVLRIFPTRGPKGWQLWSGSAVAIFYGFYQVGQLNQENNRQKYLEREARYAVAPILQAEADRNYLERELKLLQKEAEIMKDVEGWEVGKSTYNSGKWFPRTVN 126          
BLAST of mRNA_P-wetherbeei_contig5565.1.2 vs. uniprot
Match: A0A388KNK5_CHABU (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13 n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388KNK5_CHABU)

HSP 1 Score: 110 bits (274), Expect = 7.270e-27
Identity = 55/114 (48.25%), Postives = 74/114 (64.91%), Query Frame = 1
Query:   22 PPLQEMPPSGGYPQFDVRSRIRSRGPPGWALFLGSTLVVSYGFYKLMDGNTKRGMDKLEKREARVAIVPLLQAEADVSAVRRQRALLKEEEEIMGHIPGWKVGESVYKTGVWVP 363
            P LQ+ PP GG+P      +I + GP G  +F  +  V+SYG Y++  GN  R   K EK EAR+AI+PL+QAE DV   + ++  L EEE+IM ++PGWKVGESVY +G W P
Sbjct:   19 PVLQDGPPPGGFPAIRYARKIPNTGPSGVVVFSIAAAVISYGMYQVGQGNLHRRALKKEKMEARMAILPLIQAEEDVRYAKARQKALAEEEKIMQNVPGWKVGESVYNSGRWAP 132          
BLAST of mRNA_P-wetherbeei_contig5565.1.2 vs. uniprot
Match: A0A0D6QRQ9_ARACU (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13 n=2 Tax=Araucariaceae TaxID=25664 RepID=A0A0D6QRQ9_ARACU)

HSP 1 Score: 109 bits (272), Expect = 1.530e-26
Identity = 58/117 (49.57%), Postives = 74/117 (63.25%), Query Frame = 1
Query:   13 RTGPPLQEMPPSGGYPQFDVRSRIRSRGPPGWALFLGSTLVVSYGFYKLMDGNTKRGMDKLEKREARVAIVPLLQAEADVSAVRRQRALLKEEEEIMGHIPGWKVGESVYKTGVWVP 363
            R  P LQ+ PP GG+P      RI ++GP   A+FL S  ++SYG Y++  GN  R   K EK  AR AI+PLLQAE D   V   +  L+EE EIM ++PGWKVGESVY +G W+P
Sbjct:   16 REMPVLQDGPPPGGFPPVRYTRRIPNKGPGAVAVFLASFGIISYGMYQIGQGNKYRSRLKREKFAARSAILPLLQAEEDERFVTAWKEYLEEEAEIMKNVPGWKVGESVYNSGKWMP 132          
BLAST of mRNA_P-wetherbeei_contig5565.1.2 vs. uniprot
Match: B7G3W2_PHATC (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13 n=3 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7G3W2_PHATC)

HSP 1 Score: 105 bits (262), Expect = 3.660e-25
Identity = 49/118 (41.53%), Postives = 76/118 (64.41%), Query Frame = 1
Query:   16 TGPPLQEMPPSGGYPQFDVRSRIRSRGPPGWALFLGSTLVVSYGFYKLMDGNTKRGMDKLEKREARVAIVPLLQAEADVSAVRRQRALLKEEEEIMGHIPGWKVGESVY-KTGVWVPK 366
            + PP+Q+MPP GG+P  D++   R+RGP G  ++  ++L ++YG Y+L   N +R  +  E+R++R A+ P+LQAE D     R+  +  +E EIM ++ GWK GESVY  T  WVP+
Sbjct:    8 SAPPIQDMPPPGGFPAVDLKRTARARGPSGGTIWAVASLSIAYGMYRLGQQNRERATEMFEERKSRYAVAPILQAEEDKWYAEREADITAKEAEIMKNVSGWKAGESVYHSTNRWVPR 125          
BLAST of mRNA_P-wetherbeei_contig5565.1.2 vs. uniprot
Match: A0A2I0WNF5_9ASPA (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13 n=2 Tax=Epidendroideae TaxID=158332 RepID=A0A2I0WNF5_9ASPA)

HSP 1 Score: 105 bits (262), Expect = 4.460e-25
Identity = 55/114 (48.25%), Postives = 73/114 (64.04%), Query Frame = 1
Query:   22 PPLQEMPPSGGYPQFDVRSRIRSRGPPGWALFLGSTLVVSYGFYKLMDGNTKRGMDKLEKREARVAIVPLLQAEADVSAVRRQRALLKEEEEIMGHIPGWKVGESVYKTGVWVP 363
            P LQ+ PP GG+P      RI ++GP   A+FL +  V +YG Y++  GN  R + K EK  AR AI+P+LQAE D   V+  +  L+EE +IM  +PGWKVGESVY +G WVP
Sbjct:   19 PVLQDGPPPGGFPPVRYARRIPTKGPGAVAIFLTAFGVFAYGMYQIGQGNKIRRVQKEEKYAARRAIIPVLQAEEDERFVKEWKKYLEEEAKIMKDVPGWKVGESVYNSGRWVP 132          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5565.1.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836C7G5_9STRA1.120e-3850.00NADH dehydrogenase [ubiquinone] 1 alpha subcomplex... [more]
W7U770_9STRA3.280e-3753.28NADH dehydrogenase [ubiquinone] 1 alpha subcomplex... [more]
A0A1Z5KQQ9_FISSO1.160e-3249.57NADH dehydrogenase [ubiquinone] 1 alpha subcomplex... [more]
A0A7S1FYH9_9STRA3.550e-3047.06NADH dehydrogenase [ubiquinone] 1 alpha subcomplex... [more]
A0A7S3NKY2_9STRA6.840e-2847.41NADH dehydrogenase [ubiquinone] 1 alpha subcomplex... [more]
A0A7S3Q271_9STRA1.010e-2743.44NADH dehydrogenase [ubiquinone] 1 alpha subcomplex... [more]
A0A388KNK5_CHABU7.270e-2748.25NADH dehydrogenase [ubiquinone] 1 alpha subcomplex... [more]
A0A0D6QRQ9_ARACU1.530e-2649.57NADH dehydrogenase [ubiquinone] 1 alpha subcomplex... [more]
B7G3W2_PHATC3.660e-2541.53NADH dehydrogenase [ubiquinone] 1 alpha subcomplex... [more]
A0A2I0WNF5_9ASPA4.460e-2548.25NADH dehydrogenase [ubiquinone] 1 alpha subcomplex... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig5565contigP-wetherbeei_contig5565:568..1956 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2850.Phatr28620
PFAMsGRIM-19
Model size714
Max annot lvl2836|Bacillariophyta
KEGG koko:K11353
KEGG TC3.D.1.6
KEGG Pathwayko00190,ko01100,ko04714,ko04723,ko04932,ko05010,ko05012,ko05016,map00190,map01100,map04714,map04723,map04932,map05010,map05012,map05016
KEGG ModuleM00146
Hectar predicted targeting categorysignal anchor
Exons4
Evalue1.94e-27
EggNOG OGsKOG3300@1|root,KOG3300@2759|Eukaryota,2XDRB@2836|Bacillariophyta
Ec32 ortholog descriptionGRIM-19
Ec32 orthologEc-19_002380.1
DescriptionGRIM-19 protein
Cds size384
COG categoryCD
BRITEko00000,ko00001,ko00002
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186828.2996364-CDS-P-wetherbeei_contig5565:567..6301683186828.2996364-CDS-P-wetherbeei_contig5565:567..630Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5565 568..630 +
1683186828.3094225-CDS-P-wetherbeei_contig5565:829..9221683186828.3094225-CDS-P-wetherbeei_contig5565:829..922Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5565 830..922 +
1683186828.3172982-CDS-P-wetherbeei_contig5565:1081..11971683186828.3172982-CDS-P-wetherbeei_contig5565:1081..1197Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5565 1082..1197 +
1683186828.3251128-CDS-P-wetherbeei_contig5565:1514..16261683186828.3251128-CDS-P-wetherbeei_contig5565:1514..1626Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5565 1515..1626 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186828.3333135-UTR-P-wetherbeei_contig5565:1626..19561683186828.3333135-UTR-P-wetherbeei_contig5565:1626..1956Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig5565 1627..1956 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig5565.1.2prot_P-wetherbeei_contig5565.1.2Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig5565 568..1626 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig5565.1.2

>prot_P-wetherbeei_contig5565.1.2 ID=prot_P-wetherbeei_contig5565.1.2|Name=mRNA_P-wetherbeei_contig5565.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=128bp
MALPRTGPPLQEMPPSGGYPQFDVRSRIRSRGPPGWALFLGSTLVVSYGF
YKLMDGNTKRGMDKLEKREARVAIVPLLQAEADVSAVRRQRALLKEEEEI
MGHIPGWKVGESVYKTGVWVPKTFDIA*
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mRNA from alignment at P-wetherbeei_contig5565:568..1956+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig5565.1.2 ID=mRNA_P-wetherbeei_contig5565.1.2|Name=mRNA_P-wetherbeei_contig5565.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1389bp|location=Sequence derived from alignment at P-wetherbeei_contig5565:568..1956+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGCCCTCCCGAGAACAGGACCACCGCTGCAGGAGATGCCGCCTTCCGG AGGCTACCCACAGGTGGGGCGAATGTCTTGTTTGATAAGTGGCCTCGTCG GCAGTTTATCTATCTACTTTTATTGCTGATTGTCATAGTTTCTCCTTGAT GGCCTGTTTACTTCCGTAATGCCATCTTCACGCCTGCTTCCGTTGGCCCT TCTCAACTACGATTCGTCCCGACGCACGCGTCTCCCCGACACACTCAATA TCTGCGTTTCAGTTTGACGTGCGCTCGCGGATTCGGTCTCGGGGACCGCC TGGCTGGGCCCTCTTTCTTGGCTCCACCCTCGTCGTTAGCTACGGATTCT ACAAGGTGCGCTTTGTGCGTTGCGTAGCTCTTCTTTTTTGCTGGCCGGTG GGCCCGCAGCAGTGCTCTGTATTTTGCGTTTGCGCGATACTTACTCGTTG GAAACCTTTCTATCTCGTCGTGGCGGTTGATCCTTAATTGATTTGTACTG GCTCGGACGGACAGCTTATGGACGGCAACACAAAGCGCGGCATGGACAAG CTGGAGAAGCGCGAGGCCAGAGTGGCGATCGTGCCGCTCCTACAGGCGGA AGCCGACGTCTCCGCAGTCAGGCGCCAAAGGTATGTTTCCCCAAAGCAGA GCGCGGCGTTTCACTTCAATAATACAGACGCAGCGTCTTCGCAAGAATAC ATCGACATTTTCCTTATTATGCTGGACAATGCGGTTCTCTATGTCTCGCA CTACCTCATCAACCGTAAATGGATCGGCCACCATCCTGCGCTCTGCTTGT TACGCTTGCGTTTTCCAGCGCGCGCCTTGGCGGCCATTCCATTGCACAAA CGACACTGCGTTTTACCGCGAGTCCTCACTGGTTTCTGTTGGCTTGTCCT CGTCCCGGTTTTCTGTCCTGTTTCTCTCTCCGGATCCACGTGTTCAGGGC GCTGCTGAAGGAGGAGGAAGAAATAATGGGCCACATTCCGGGCTGGAAGG TAGGCGAGAGCGTGTATAAGACGGGCGTGTGGGTGCCCAAGACCTTCGAC ATTGCCTAGCAGGTGGCCAGCGGCGGGGTGAGATTGGGAGAGCCAACGGC AACGGCGGCGTCGGCGGCGGCGGGCGACCCTACAGCGGGAGCAGACGGCA GTAGCTTACGGCCGAAGCCACAACTGCCGGTGGCAGCAGTTATCACCGGC GACAGGTGGCAGCAACGGTGTCCTCGATACGCTGCCTCTGTCGATGGAAG GACGATTCTGCCCTCTCTGCGGCACTTCTTGGTATGTGTGGGTGCGCTTC CGTGGCTGCCGTGCTGCTGGAGGGCTCTGCTCCGTTTCGGGGCCCCCGGG AGGCAGCTTCGTGGCACAAAATTCAGTTTCTTTTTGGTG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig5565:568..1956+

>mRNA_P-wetherbeei_contig5565.1.2 ID=mRNA_P-wetherbeei_contig5565.1.2|Name=mRNA_P-wetherbeei_contig5565.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=384bp|location=Sequence derived from alignment at P-wetherbeei_contig5565:568..1956+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGCCCTCCCGAGAACAGGACCACCGCTGCAGGAGATGCCGCCTTCCGG
AGGCTACCCACAGTTTGACGTGCGCTCGCGGATTCGGTCTCGGGGACCGC
CTGGCTGGGCCCTCTTTCTTGGCTCCACCCTCGTCGTTAGCTACGGATTC
TACAAGCTTATGGACGGCAACACAAAGCGCGGCATGGACAAGCTGGAGAA
GCGCGAGGCCAGAGTGGCGATCGTGCCGCTCCTACAGGCGGAAGCCGACG
TCTCCGCAGTCAGGCGCCAAAGGGCGCTGCTGAAGGAGGAGGAAGAAATA
ATGGGCCACATTCCGGGCTGGAAGGTAGGCGAGAGCGTGTATAAGACGGG
CGTGTGGGTGCCCAAGACCTTCGACATTGCCTAG
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