mRNA_P-wetherbeei_contig55649.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig55649.1.1
Unique NamemRNA_P-wetherbeei_contig55649.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig55649.1.1 vs. uniprot
Match: A0A560E5L5_9BRAD (D-methionine transport system ATP-binding protein n=9 Tax=Bradyrhizobium TaxID=374 RepID=A0A560E5L5_9BRAD)

HSP 1 Score: 294 bits (753), Expect = 1.410e-96
Identity = 160/172 (93.02%), Postives = 164/172 (95.35%), Query Frame = 1
Query:    1 ATSALDPQTTRAILDLLANINRELGVTIVLITHEMSVVRQLAKDVVVLDAGHVVESGHVADIFTHPKHPITQSFLAEAIGDSLPVSLQSRIVAEPPAGGQAVIRVQVRGAGAGDTLVARLARELGLDVALLSARIDEIGGQHVGSLVLGIPLGTSGGDDAVTRTLAWLSQYQ 516
            ATSALDPQTTRAILDLLANINRELGVTIVLITHEMSVVRQLAK+VVVLDAGHVVESGHVADIFTHPKHPITQSFLAE IGDSLPVSL SRIV +  AGGQAVIRVQVRGAGAGDT+VARLARELGLDVALLSARIDEIGGQHVGSL LGIPL  SGG+DAVTRTLAWLSQYQ
Sbjct:  236 ATSALDPQTTRAILDLLANINRELGVTIVLITHEMSVVRQLAKEVVVLDAGHVVESGHVADIFTHPKHPITQSFLAEVIGDSLPVSLASRIVPQAAAGGQAVIRVQVRGAGAGDTVVARLARELGLDVALLSARIDEIGGQHVGSLTLGIPLNISGGEDAVTRTLAWLSQYQ 407          
BLAST of mRNA_P-wetherbeei_contig55649.1.1 vs. uniprot
Match: UPI000576947C (ATP-binding cassette domain-containing protein n=1 Tax=Bradyrhizobium sp. CCBAU 15615 TaxID=1128179 RepID=UPI000576947C)

HSP 1 Score: 286 bits (732), Expect = 2.280e-95
Identity = 158/172 (91.86%), Postives = 161/172 (93.60%), Query Frame = 1
Query:    1 ATSALDPQTTRAILDLLANINRELGVTIVLITHEMSVVRQLAKDVVVLDAGHVVESGHVADIFTHPKHPITQSFLAEAIGDSLPVSLQSRIVAEPPAGGQAVIRVQVRGAGAGDTLVARLARELGLDVALLSARIDEIGGQHVGSLVLGIPLGTSGGDDAVTRTLAWLSQYQ 516
            ATSALDPQTTRAILDLLANINRELGVTIVLITHEMSVVRQLAK+VVVLDAGHVVESGHVADIFTHPKHPITQSFLAE IGDSLPVSL SRIVAEPP GGQAVIRVQVRGAGAGDT+VARLARELGLDVALLSARIDEIGGQHVGSLVLGIP    G +DA  R LAWLSQYQ
Sbjct:   97 ATSALDPQTTRAILDLLANINRELGVTIVLITHEMSVVRQLAKEVVVLDAGHVVESGHVADIFTHPKHPITQSFLAEVIGDSLPVSLASRIVAEPPVGGQAVIRVQVRGAGAGDTVVARLARELGLDVALLSARIDEIGGQHVGSLVLGIP----GREDAQARVLAWLSQYQ 264          
BLAST of mRNA_P-wetherbeei_contig55649.1.1 vs. uniprot
Match: I2Q8N8_9BRAD (ABC-type metal ion transport system, ATPase component n=19 Tax=Bradyrhizobiaceae TaxID=41294 RepID=I2Q8N8_9BRAD)

HSP 1 Score: 287 bits (735), Expect = 2.640e-94
Identity = 158/172 (91.86%), Postives = 161/172 (93.60%), Query Frame = 1
Query:    1 ATSALDPQTTRAILDLLANINRELGVTIVLITHEMSVVRQLAKDVVVLDAGHVVESGHVADIFTHPKHPITQSFLAEAIGDSLPVSLQSRIVAEPPAGGQAVIRVQVRGAGAGDTLVARLARELGLDVALLSARIDEIGGQHVGSLVLGIPLGTSGGDDAVTRTLAWLSQYQ 516
            ATSALDPQTTRAILDLL NINRELGVTIVLITHEMSVVRQLA +VVVLDAGHVVESGHVADIFTHPKHPITQSFLAE IGDSLPVSL SRIV+ PPAGGQAVIRVQVRGAGAGDTLVARLARELGLDV+LLSARIDEIGGQHVGSL LGIP    GGDDA TRTLAWLSQYQ
Sbjct:  206 ATSALDPQTTRAILDLLVNINRELGVTIVLITHEMSVVRQLAGNVVVLDAGHVVESGHVADIFTHPKHPITQSFLAEVIGDSLPVSLASRIVSAPPAGGQAVIRVQVRGAGAGDTLVARLARELGLDVSLLSARIDEIGGQHVGSLTLGIP----GGDDATTRTLAWLSQYQ 373          
BLAST of mRNA_P-wetherbeei_contig55649.1.1 vs. uniprot
Match: A0A0R3CZX4_9BRAD (Methionine ABC transporter ATP-binding protein n=17 Tax=Bradyrhizobium TaxID=374 RepID=A0A0R3CZX4_9BRAD)

HSP 1 Score: 282 bits (722), Expect = 2.040e-92
Identity = 156/173 (90.17%), Postives = 161/173 (93.06%), Query Frame = 1
Query:    1 ATSALDPQTTRAILDLLANINRELGVTIVLITHEMSVVRQLAKDVVVLDAGHVVESGHVADIFTHPKHPITQSFLAEAIGDSLPVSLQSRIVAEPPAGGQAVIRVQVRGAGAGDTLVARLARELGLDVALLSARIDEIGGQHVGSLVLGIPLGTSGGDDAVTRTLAWLSQYQV 519
            ATSALDPQTTRAILDLLANINRELGVTIVLITHEMSVVRQLA+DVVVLDAG VVESGHVADIFTHPKHPITQSFLAEA GDSLPVSL SRIV EP  G  AVIRVQVRGAGAGDTL+ARLARELGLDV+LLSARIDEIGGQHVGSLVLGIP+  SGG+ A TRTLAWLSQYQV
Sbjct:  198 ATSALDPQTTRAILDLLANINRELGVTIVLITHEMSVVRQLARDVVVLDAGRVVESGHVADIFTHPKHPITQSFLAEASGDSLPVSLASRIVQEP--GSHAVIRVQVRGAGAGDTLIARLARELGLDVSLLSARIDEIGGQHVGSLVLGIPVSDSGGEGATTRTLAWLSQYQV 368          
BLAST of mRNA_P-wetherbeei_contig55649.1.1 vs. uniprot
Match: A0A0X8CQD3_9BRAD (Methionine ABC transporter ATP-binding protein n=26 Tax=Bradyrhizobium TaxID=374 RepID=A0A0X8CQD3_9BRAD)

HSP 1 Score: 282 bits (721), Expect = 2.640e-92
Identity = 155/172 (90.12%), Postives = 160/172 (93.02%), Query Frame = 1
Query:    1 ATSALDPQTTRAILDLLANINRELGVTIVLITHEMSVVRQLAKDVVVLDAGHVVESGHVADIFTHPKHPITQSFLAEAIGDSLPVSLQSRIVAEPPAGGQAVIRVQVRGAGAGDTLVARLARELGLDVALLSARIDEIGGQHVGSLVLGIPLGTSGGDDAVTRTLAWLSQYQ 516
            ATSALDPQTTRAILDLLANINRELGVTIVLITHEMSVVRQLAK+VVVLDAG VVESGHVADIFTHP HPITQSFLAE IGDSLPVSL SRIV EP  GGQ VIR+QVRGAGAGDT+VARLARELGLDVALL+ARIDEIGGQHVGSLVLGIP    GG+DAVTRTLAWLSQYQ
Sbjct:  197 ATSALDPQTTRAILDLLANINRELGVTIVLITHEMSVVRQLAKEVVVLDAGRVVESGHVADIFTHPNHPITQSFLAEVIGDSLPVSLASRIVPEPVVGGQTVIRIQVRGAGAGDTVVARLARELGLDVALLAARIDEIGGQHVGSLVLGIP----GGEDAVTRTLAWLSQYQ 364          
BLAST of mRNA_P-wetherbeei_contig55649.1.1 vs. uniprot
Match: METN_BRADU (Methionine import ATP-binding protein MetN n=173 Tax=Bradyrhizobiaceae TaxID=41294 RepID=METN_BRADU)

HSP 1 Score: 280 bits (715), Expect = 8.940e-92
Identity = 152/172 (88.37%), Postives = 160/172 (93.02%), Query Frame = 1
Query:    1 ATSALDPQTTRAILDLLANINRELGVTIVLITHEMSVVRQLAKDVVVLDAGHVVESGHVADIFTHPKHPITQSFLAEAIGDSLPVSLQSRIVAEPPAGGQAVIRVQVRGAGAGDTLVARLARELGLDVALLSARIDEIGGQHVGSLVLGIPLGTSGGDDAVTRTLAWLSQYQ 516
            ATSALDPQTTRAILDLLANINRELGVTIVLITHEMSVVRQLA++VVVLDAGHVVESGHVADIFTHPKHPITQSFLAE +GDSLPVSL SRIV+EP AGGQAVIRVQVRGAGAGDT+VARLARELGLDVALL+ARIDEIGGQHVGSLVLG+P    G +D   R LAWLSQYQ
Sbjct:  169 ATSALDPQTTRAILDLLANINRELGVTIVLITHEMSVVRQLAREVVVLDAGHVVESGHVADIFTHPKHPITQSFLAEVVGDSLPVSLASRIVSEPSAGGQAVIRVQVRGAGAGDTVVARLARELGLDVALLAARIDEIGGQHVGSLVLGVP----GSEDVQARVLAWLSQYQ 336          
BLAST of mRNA_P-wetherbeei_contig55649.1.1 vs. uniprot
Match: UPI001BA51868 (methionine ABC transporter ATP-binding protein n=2 Tax=Bradyrhizobium diazoefficiens TaxID=1355477 RepID=UPI001BA51868)

HSP 1 Score: 273 bits (698), Expect = 8.000e-89
Identity = 148/172 (86.05%), Postives = 156/172 (90.70%), Query Frame = 1
Query:    1 ATSALDPQTTRAILDLLANINRELGVTIVLITHEMSVVRQLAKDVVVLDAGHVVESGHVADIFTHPKHPITQSFLAEAIGDSLPVSLQSRIVAEPPAGGQAVIRVQVRGAGAGDTLVARLARELGLDVALLSARIDEIGGQHVGSLVLGIPLGTSGGDDAVTRTLAWLSQYQ 516
            ATSALDPQTTRAILDLLANINRELGVTIVLITHEMSVVRQLAK+VVVLDAGHVVE GHVADIFTHP HPIT+SFLAE  GDSLPVSL SR+V EP AGGQ VIRVQVRGAGAGDTL+ARLARELGLDV+LLSAR+DEIGGQHVGSLVLGIP    GG+DA  R L WLSQY+
Sbjct:  197 ATSALDPQTTRAILDLLANINRELGVTIVLITHEMSVVRQLAKEVVVLDAGHVVERGHVADIFTHPSHPITRSFLAEVTGDSLPVSLASRLVQEPAAGGQVVIRVQVRGAGAGDTLIARLARELGLDVSLLSARVDEIGGQHVGSLVLGIP----GGEDAAARVLTWLSQYR 364          
BLAST of mRNA_P-wetherbeei_contig55649.1.1 vs. uniprot
Match: A0A1I5TNJ7_9BRAD (D-methionine transport system ATP-binding protein n=5 Tax=Bradyrhizobium TaxID=374 RepID=A0A1I5TNJ7_9BRAD)

HSP 1 Score: 270 bits (689), Expect = 1.960e-87
Identity = 150/173 (86.71%), Postives = 156/173 (90.17%), Query Frame = 1
Query:    1 ATSALDPQTTRAILDLLANINRELGVTIVLITHEMSVVRQLAKDVVVLDAGHVVESGHVADIFTHPKHPITQSFLAEAIGDSLPVSLQSRIVAEPPAGGQAVIRVQVRGAGAGDTLVARLARELGLDVALLSARIDEIGGQHVGSLVLGIPLGTSGGDDAVTRTLAWLSQYQV 519
            ATSALDPQTTRAILDLLANINR LGVTIVLITHEMSVVRQLAK+VVVLDAGH+VESGHVADIFTHPKHP+TQSFLAE  GDSLPVSL SRIV EP  G  AVIRVQVRGAGAGDTL+ARLARELGLDV+LLSARIDEIGGQHVGSLVLGIP    GGD A  RTL WLSQ+QV
Sbjct:  201 ATSALDPQTTRAILDLLANINRALGVTIVLITHEMSVVRQLAKEVVVLDAGHLVESGHVADIFTHPKHPVTQSFLAEVTGDSLPVSLASRIVQEP--GNHAVIRVQVRGAGAGDTLIARLARELGLDVSLLSARIDEIGGQHVGSLVLGIP----GGDSAAARTLVWLSQHQV 367          
BLAST of mRNA_P-wetherbeei_contig55649.1.1 vs. uniprot
Match: A0A176YHV3_9BRAD (Methionine ABC transporter ATP-binding protein n=1 Tax=Bradyrhizobium centrolobii TaxID=1505087 RepID=A0A176YHV3_9BRAD)

HSP 1 Score: 266 bits (681), Expect = 2.990e-86
Identity = 148/173 (85.55%), Postives = 157/173 (90.75%), Query Frame = 1
Query:    1 ATSALDPQTTRAILDLLANINRELGVTIVLITHEMSVVRQLAKDVVVLDAGHVVESGHVADIFTHPKHPITQSFLAEAIGDSLPVSLQSRIVAEPPAGGQAVIRVQVRGAGAGDTLVARLARELGLDVALLSARIDEIGGQHVGSLVLGIPLGTSGGDDAVTRTLAWLSQYQV 519
            ATSALDPQTTRAILDLLANINRELGVTIVLITHEMSVVRQLAK+VVVLD+G VVE GHVADIFTHPKHPITQSFLAE IGDSLPVSL SR+V EP A G AVIRVQVRGAGAG+TLVARLARELGLDV+LLSARIDEIGGQHVGSL LGIP    GG+ A TR LA+LSQ+Q+
Sbjct:  197 ATSALDPQTTRAILDLLANINRELGVTIVLITHEMSVVRQLAKEVVVLDSGRVVEKGHVADIFTHPKHPITQSFLAEVIGDSLPVSLASRLVQEPLASGHAVIRVQVRGAGAGNTLVARLARELGLDVSLLSARIDEIGGQHVGSLTLGIP----GGESAATRALAFLSQHQI 365          
BLAST of mRNA_P-wetherbeei_contig55649.1.1 vs. uniprot
Match: A0A176YWE0_9BRAD (Methionine ABC transporter ATP-binding protein n=3 Tax=Bradyrhizobium TaxID=374 RepID=A0A176YWE0_9BRAD)

HSP 1 Score: 263 bits (672), Expect = 6.860e-85
Identity = 147/173 (84.97%), Postives = 155/173 (89.60%), Query Frame = 1
Query:    1 ATSALDPQTTRAILDLLANINRELGVTIVLITHEMSVVRQLAKDVVVLDAGHVVESGHVADIFTHPKHPITQSFLAEAIGDSLPVSLQSRIVAEPPAGGQAVIRVQVRGAGAGDTLVARLARELGLDVALLSARIDEIGGQHVGSLVLGIPLGTSGGDDAVTRTLAWLSQYQV 519
            ATSALDPQTTRAILDLLANINRELGVTIVLITHEMSVVRQLAK+VVVLD+GHVVE GHVADIFTHP+HPITQSFLAE IGDSLPVSL SRIV EP  GG AVIRVQVRGAGAGDTLVARLARELGLDV+LLSARIDEIGGQHVGSL LGIP    GG+ A  R L++LS  Q+
Sbjct:  197 ATSALDPQTTRAILDLLANINRELGVTIVLITHEMSVVRQLAKEVVVLDSGHVVEKGHVADIFTHPQHPITQSFLAEVIGDSLPVSLASRIVPEPLTGGHAVIRVQVRGAGAGDTLVARLARELGLDVSLLSARIDEIGGQHVGSLTLGIP----GGEAAAGRALSFLSLQQI 365          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig55649.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A560E5L5_9BRAD1.410e-9693.02D-methionine transport system ATP-binding protein ... [more]
UPI000576947C2.280e-9591.86ATP-binding cassette domain-containing protein n=1... [more]
I2Q8N8_9BRAD2.640e-9491.86ABC-type metal ion transport system, ATPase compon... [more]
A0A0R3CZX4_9BRAD2.040e-9290.17Methionine ABC transporter ATP-binding protein n=1... [more]
A0A0X8CQD3_9BRAD2.640e-9290.12Methionine ABC transporter ATP-binding protein n=2... [more]
METN_BRADU8.940e-9288.37Methionine import ATP-binding protein MetN n=173 T... [more]
UPI001BA518688.000e-8986.05methionine ABC transporter ATP-binding protein n=2... [more]
A0A1I5TNJ7_9BRAD1.960e-8786.71D-methionine transport system ATP-binding protein ... [more]
A0A176YHV3_9BRAD2.990e-8685.55Methionine ABC transporter ATP-binding protein n=1... [more]
A0A176YWE0_9BRAD6.860e-8584.97Methionine ABC transporter ATP-binding protein n=3... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig55649contigP-wetherbeei_contig55649:1..519 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog335659.S23_36740
Preferred namemetN
PFAMsABC_tran,NIL
Model size519
Max annot lvl28211|Alphaproteobacteria
KEGG koko:K02071
KEGG TC3.A.1.24
KEGG Pathwayko02010,map02010
KEGG ModuleM00238
Hectar predicted targeting categoryother localisation
Exons1
Evalue2.8e-102
EggNOG OGsCOG1135@1|root,COG1135@2|Bacteria,1QTTK@1224|Proteobacteria,2TQSF@28211|Alphaproteobacteria,3JWDF@41294|Bradyrhizobiaceae
DescriptionPart of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system
Cds size519
COG categoryP
BRITEko00000,ko00001,ko00002,ko02000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186828.2744784-CDS-P-wetherbeei_contig55649:0..5191683186828.2744784-CDS-P-wetherbeei_contig55649:0..519Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig55649 1..519 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig55649.1.1prot_P-wetherbeei_contig55649.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig55649 1..519 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig55649.1.1

>prot_P-wetherbeei_contig55649.1.1 ID=prot_P-wetherbeei_contig55649.1.1|Name=mRNA_P-wetherbeei_contig55649.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=173bp
ATSALDPQTTRAILDLLANINRELGVTIVLITHEMSVVRQLAKDVVVLDA
GHVVESGHVADIFTHPKHPITQSFLAEAIGDSLPVSLQSRIVAEPPAGGQ
AVIRVQVRGAGAGDTLVARLARELGLDVALLSARIDEIGGQHVGSLVLGI
PLGTSGGDDAVTRTLAWLSQYQV
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mRNA from alignment at P-wetherbeei_contig55649:1..519+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig55649.1.1 ID=mRNA_P-wetherbeei_contig55649.1.1|Name=mRNA_P-wetherbeei_contig55649.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=519bp|location=Sequence derived from alignment at P-wetherbeei_contig55649:1..519+ (Phaeothamnion wetherbeei SAG_119_79)
GCCACCTCGGCGCTCGACCCGCAGACCACGCGCGCGATCCTCGACCTGCT TGCGAATATCAATCGCGAGCTCGGGGTGACCATCGTGCTGATCACCCACG AAATGTCCGTGGTACGCCAGCTCGCCAAGGACGTGGTGGTGCTGGACGCA GGCCACGTCGTCGAGAGCGGCCATGTCGCCGACATCTTCACCCACCCGAA GCATCCGATCACGCAATCCTTCCTCGCCGAGGCGATCGGCGACAGCCTGC CGGTCTCGCTGCAGAGCCGGATCGTCGCGGAGCCGCCTGCGGGCGGACAG GCCGTGATCCGCGTCCAGGTCCGCGGGGCAGGGGCCGGCGACACGCTGGT GGCGCGGCTCGCGCGCGAACTCGGCCTCGACGTGGCGCTGCTGTCAGCCC GCATCGACGAGATCGGCGGCCAGCATGTCGGCTCGCTGGTGCTCGGCATT CCCCTTGGCACGTCCGGCGGCGACGACGCGGTGACACGGACGCTCGCATG GCTCTCTCAATATCAAGTC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig55649:1..519+

>mRNA_P-wetherbeei_contig55649.1.1 ID=mRNA_P-wetherbeei_contig55649.1.1|Name=mRNA_P-wetherbeei_contig55649.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=519bp|location=Sequence derived from alignment at P-wetherbeei_contig55649:1..519+ (Phaeothamnion wetherbeei SAG_119_79)
GCCACCTCGGCGCTCGACCCGCAGACCACGCGCGCGATCCTCGACCTGCT
TGCGAATATCAATCGCGAGCTCGGGGTGACCATCGTGCTGATCACCCACG
AAATGTCCGTGGTACGCCAGCTCGCCAAGGACGTGGTGGTGCTGGACGCA
GGCCACGTCGTCGAGAGCGGCCATGTCGCCGACATCTTCACCCACCCGAA
GCATCCGATCACGCAATCCTTCCTCGCCGAGGCGATCGGCGACAGCCTGC
CGGTCTCGCTGCAGAGCCGGATCGTCGCGGAGCCGCCTGCGGGCGGACAG
GCCGTGATCCGCGTCCAGGTCCGCGGGGCAGGGGCCGGCGACACGCTGGT
GGCGCGGCTCGCGCGCGAACTCGGCCTCGACGTGGCGCTGCTGTCAGCCC
GCATCGACGAGATCGGCGGCCAGCATGTCGGCTCGCTGGTGCTCGGCATT
CCCCTTGGCACGTCCGGCGGCGACGACGCGGTGACACGGACGCTCGCATG
GCTCTCTCAATATCAAGTC
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