mRNA_P-wetherbeei_contig55628.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig55628.1.1
Unique NamemRNA_P-wetherbeei_contig55628.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig55628.1.1 vs. uniprot
Match: E6VPZ3_RHOPX (Uncharacterized protein n=8 Tax=Rhodopseudomonas TaxID=1073 RepID=E6VPZ3_RHOPX)

HSP 1 Score: 53.9 bits (128), Expect = 1.390e-7
Identity = 28/52 (53.85%), Postives = 35/52 (67.31%), Query Frame = 1 
Query:   13 PASLERAMLQTLADWLKRRRERAELDALDPGERDRVAHDLGVSATELDFLVR 168
            P  L   +L+T ADWLK RRE  E+   D  E  R+AHDLGV+A++LD LVR
Sbjct:    7 PYPLVDRLLETFADWLKHRREVVEMCQFDSAEFGRIAHDLGVTASDLDELVR 58
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BLAST of mRNA_P-wetherbeei_contig55628.1.1 vs. uniprot
Match: UPI000345674B (hypothetical protein n=1 Tax=Rhodopseudomonas sp. B29 TaxID=95607 RepID=UPI000345674B)

HSP 1 Score: 52.8 bits (125), Expect = 3.870e-7
Identity = 25/45 (55.56%), Postives = 32/45 (71.11%), Query Frame = 1 
Query:   34 MLQTLADWLKRRRERAELDALDPGERDRVAHDLGVSATELDFLVR 168
            +++T ADWLK RRE  E+   D  E  R+AHDLGV+ T+LD LVR
Sbjct:   14 LIETFADWLKHRREIVEMCQFDAAEFGRIAHDLGVTTTDLDELVR 58
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BLAST of mRNA_P-wetherbeei_contig55628.1.1 vs. uniprot
Match: Q2IR38_RHOP2 (Uncharacterized protein n=1 Tax=Rhodopseudomonas palustris (strain HaA2) TaxID=316058 RepID=Q2IR38_RHOP2)

HSP 1 Score: 51.2 bits (121), Expect = 1.540e-6
Identity = 23/45 (51.11%), Postives = 34/45 (75.56%), Query Frame = 1 
Query:   34 MLQTLADWLKRRRERAELDALDPGERDRVAHDLGVSATELDFLVR 168
            +++T A+WLK RR+ +E+   D  E  R+AHDLGV++T+LD LVR
Sbjct:   14 LIETFAEWLKHRRDVSEMCQFDAAEFSRIAHDLGVTSTDLDELVR 58
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BLAST of mRNA_P-wetherbeei_contig55628.1.1 vs. uniprot
Match: A0A318THV4_9BRAD (Uncharacterized protein n=1 Tax=Rhodopseudomonas faecalis TaxID=99655 RepID=A0A318THV4_9BRAD)

HSP 1 Score: 50.4 bits (119), Expect = 2.910e-6
Identity = 25/56 (44.64%), Postives = 36/56 (64.29%), Query Frame = 1 
Query:    1 PAAVPASLERAMLQTLADWLKRRRERAELDALDPGERDRVAHDLGVSATELDFLVR 168
            P+  P  L   ++   ADWLK R+E +E+   D  E  R+AHDLGV++++LD LVR
Sbjct:    2 PSTTPYPLVDRLIGVFADWLKHRQEVSEMCQFDAAEFSRIAHDLGVTSSDLDELVR 57
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BLAST of mRNA_P-wetherbeei_contig55628.1.1 vs. uniprot
Match: A0A0D7F536_RHOPL (Uncharacterized protein n=1 Tax=Rhodopseudomonas palustris TaxID=1076 RepID=A0A0D7F536_RHOPL)

HSP 1 Score: 49.3 bits (116), Expect = 8.490e-6
Identity = 23/45 (51.11%), Postives = 32/45 (71.11%), Query Frame = 1 
Query:   34 MLQTLADWLKRRRERAELDALDPGERDRVAHDLGVSATELDFLVR 168
            + +  ADWL+ RRE +E+   D  E  R+AHDLGV+A++LD LVR
Sbjct:   14 LTEMFADWLRHRREISEMCQFDAAEYSRIAHDLGVTASDLDDLVR 58
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BLAST of mRNA_P-wetherbeei_contig55628.1.1 vs. uniprot
Match: A0A0N1LU32_9BRAD (Uncharacterized protein n=2 Tax=unclassified Rhodopseudomonas TaxID=2638247 RepID=A0A0N1LU32_9BRAD)

HSP 1 Score: 48.1 bits (113), Expect = 2.350e-5
Identity = 23/45 (51.11%), Postives = 31/45 (68.89%), Query Frame = 1 
Query:   34 MLQTLADWLKRRRERAELDALDPGERDRVAHDLGVSATELDFLVR 168
            ++ T A WLK RRE  E+   D  E  R+AHDLGV++++LD LVR
Sbjct:   14 LIDTFAAWLKHRREVTEMCQFDAAEFSRIAHDLGVTSSDLDELVR 58
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BLAST of mRNA_P-wetherbeei_contig55628.1.1 vs. uniprot
Match: Q07T87_RHOP5 (Uncharacterized protein n=1 Tax=Rhodopseudomonas palustris (strain BisA53) TaxID=316055 RepID=Q07T87_RHOP5)

HSP 1 Score: 48.1 bits (113), Expect = 2.780e-5
Identity = 25/56 (44.64%), Postives = 33/56 (58.93%), Query Frame = 1 
Query:    1 PAAVPASLERAMLQTLADWLKRRRERAELDALDPGERDRVAHDLGVSATELDFLVR 168
            P   P      ++   ADWLK RRE  E+   D  E  R+AHDLGV++++LD LVR
Sbjct:   17 PHTTPYPFVDRVIGVFADWLKHRREITEMCQFDAAEFGRIAHDLGVTSSDLDDLVR 72
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BLAST of mRNA_P-wetherbeei_contig55628.1.1 vs. uniprot
Match: UPI00185B91BA (Uncharacterized protein n=1 Tax=Rhodopseudomonas sp. TaxID=1078 RepID=UPI00185B91BA)

HSP 1 Score: 47.8 bits (112), Expect = 3.400e-5
Identity = 22/45 (48.89%), Postives = 31/45 (68.89%), Query Frame = 1 
Query:   34 MLQTLADWLKRRRERAELDALDPGERDRVAHDLGVSATELDFLVR 168
            +++   DWLK RRE  E+   D  E  R+AHDLGV++++LD LVR
Sbjct:   14 LIEMFGDWLKHRREITEMCQFDAAEFGRIAHDLGVTSSDLDELVR 58
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig55628.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
E6VPZ3_RHOPX1.390e-753.85Uncharacterized protein n=8 Tax=Rhodopseudomonas T... [more]
UPI000345674B3.870e-755.56hypothetical protein n=1 Tax=Rhodopseudomonas sp. ... [more]
Q2IR38_RHOP21.540e-651.11Uncharacterized protein n=1 Tax=Rhodopseudomonas p... [more]
A0A318THV4_9BRAD2.910e-644.64Uncharacterized protein n=1 Tax=Rhodopseudomonas f... [more]
A0A0D7F536_RHOPL8.490e-651.11Uncharacterized protein n=1 Tax=Rhodopseudomonas p... [more]
A0A0N1LU32_9BRAD2.350e-551.11Uncharacterized protein n=2 Tax=unclassified Rhodo... [more]
Q07T87_RHOP52.780e-544.64Uncharacterized protein n=1 Tax=Rhodopseudomonas p... [more]
UPI00185B91BA3.400e-548.89Uncharacterized protein n=1 Tax=Rhodopseudomonas s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig55628contigP-wetherbeei_contig55628:354..521 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog258594.RPA0782
Preferred nameMA20_43630
Model size168
Max annot lvl28211|Alphaproteobacteria
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Evalue2.28e-08
EggNOG OGs2EHR2@1|root,33BGW@2|Bacteria,1RAEI@1224|Proteobacteria,2U6T1@28211|Alphaproteobacteria,3JYHP@41294|Bradyrhizobiaceae
Cds size168
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186828.234703-CDS-P-wetherbeei_contig55628:353..5211683186828.234703-CDS-P-wetherbeei_contig55628:353..521Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig55628 354..521 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig55628.1.1prot_P-wetherbeei_contig55628.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig55628 354..521 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig55628.1.1

>prot_P-wetherbeei_contig55628.1.1 ID=prot_P-wetherbeei_contig55628.1.1|Name=mRNA_P-wetherbeei_contig55628.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=56bp
PAAVPASLERAMLQTLADWLKRRRERAELDALDPGERDRVAHDLGVSATE
LDFLVR
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mRNA from alignment at P-wetherbeei_contig55628:354..521+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig55628.1.1 ID=mRNA_P-wetherbeei_contig55628.1.1|Name=mRNA_P-wetherbeei_contig55628.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=168bp|location=Sequence derived from alignment at P-wetherbeei_contig55628:354..521+ (Phaeothamnion wetherbeei SAG_119_79)
CCGGCCGCCGTACCGGCAAGCTTGGAGAGGGCCATGTTACAGACTCTTGC
AGATTGGCTGAAGCGCCGGCGCGAACGCGCCGAACTCGACGCGCTGGACC
CGGGCGAGCGTGACCGGGTGGCGCACGATCTCGGCGTCAGCGCCACCGAA
CTCGATTTTCTCGTGCGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig55628:354..521+

>mRNA_P-wetherbeei_contig55628.1.1 ID=mRNA_P-wetherbeei_contig55628.1.1|Name=mRNA_P-wetherbeei_contig55628.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=168bp|location=Sequence derived from alignment at P-wetherbeei_contig55628:354..521+ (Phaeothamnion wetherbeei SAG_119_79)
CCGGCCGCCGTACCGGCAAGCTTGGAGAGGGCCATGTTACAGACTCTTGC
AGATTGGCTGAAGCGCCGGCGCGAACGCGCCGAACTCGACGCGCTGGACC
CGGGCGAGCGTGACCGGGTGGCGCACGATCTCGGCGTCAGCGCCACCGAA
CTCGATTTTCTCGTGCGC
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