mRNA_P-wetherbeei_contig556.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig556.3.1
Unique NamemRNA_P-wetherbeei_contig556.3.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig556.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig556contigP-wetherbeei_contig556:8208..9159 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LQJ9
PFAMsDOT1
Model size823
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons2
Evalue1.1e-07
EggNOG OGs2BR00@1|root,2STQA@2759|Eukaryota
DescriptionHistone methylation protein DOT1
Cds size453
COG categoryS
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186827.9289436-UTR-P-wetherbeei_contig556:8207..83851683186827.9289436-UTR-P-wetherbeei_contig556:8207..8385Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig556 8208..8385 -
1683186827.9604645-UTR-P-wetherbeei_contig556:8967..91591683186827.9604645-UTR-P-wetherbeei_contig556:8967..9159Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig556 8968..9159 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186827.9406629-CDS-P-wetherbeei_contig556:8385..86881683186827.9406629-CDS-P-wetherbeei_contig556:8385..8688Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig556 8386..8688 -
1683186827.9510384-CDS-P-wetherbeei_contig556:8817..89671683186827.9510384-CDS-P-wetherbeei_contig556:8817..8967Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig556 8818..8967 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig556.3.1prot_P-wetherbeei_contig556.3.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig556 8386..8967 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig556.3.1

>prot_P-wetherbeei_contig556.3.1 ID=prot_P-wetherbeei_contig556.3.1|Name=mRNA_P-wetherbeei_contig556.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=151bp
MGGAASILRRRRGEVVSPTKEKEEAKAEANKPNQEDDAKSLEEIICRLMQ
VHHAQSKGDRWEKVTKKVNQYLKRRRIPTQSIKDAIRREGVELPTCWQLE
EIKERERKLAEALHGKQVRFSQRLPSCVLKCSRQTSTTWGWLLRQMSTSY
*
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mRNA from alignment at P-wetherbeei_contig556:8208..9159-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig556.3.1 ID=mRNA_P-wetherbeei_contig556.3.1|Name=mRNA_P-wetherbeei_contig556.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=952bp|location=Sequence derived from alignment at P-wetherbeei_contig556:8208..9159- (Phaeothamnion wetherbeei SAG_119_79)
TTCCGGATCTGGGCTTGTTATTTTCCTATCTTTCTCCTCCTGGCCCAAAA
TTGAACCTGCTGCCGACACCTCGCCGCCGAAAGGCAGGGGGATTCCATCT
TCAGCAGCAGCAGCCCCCGAGACTCCCCTTTTCAGATTTGTAACTGTTTC
AGGACCAACTTGGAAATCTCTTTGAGGATCGCGGCATGAGAGATGGGTGG
CGCCGCGTCAATCCTGCGCCGGCGTAGGGGAGAAGTTGTTTCACCCACTA
AAGAGAAGGAAGAGGCGAAAGCCGAGGCGAACAAGCCGAATCAGGAAGAT
GACGCAAAATCCCTCGAGGAGATCATCTGTCGCCTCATGCAGGCGAGCCT
AAACCCTCTTTAAGCTGTCGGGACATTTCGTACAACATTGCTCGTCGTGA
GAGCAAACATGAGAGTTTTTCTGAGGCCACTTGCCCTCTTCGTCTTCGCA
CTCCTATCAAACGCAATTCAGGTTCATCACGCTCAAAGCAAGGGAGACCG
CTGGGAAAAGGTAACAAAGAAAGTGAATCAATACCTGAAGCGCCGTCGGA
TCCCTACCCAGTCCATAAAGGACGCGATACGTAGAGAGGGTGTCGAGTTG
CCAACGTGCTGGCAGCTCGAAGAGATCAAAGAGCGCGAGCGCAAGCTGGC
GGAGGCTCTTCATGGCAAACAGGTTCGGTTCAGCCAACGGCTTCCTTCCT
GTGTTTTAAAATGTAGCAGACAGACTTCCACCACCTGGGGCTGGTTGCTG
CGGCAGATGAGCACAAGTTACTGACAGTTCTCTTGACCAGTGGCCTTGGA
TTCGTCGAGTTTTATCATGAGTCGCACCAAATCTTGACGTAAGATTCGCT
CTTACCGAAAAAATGCGCACATGTGAATGATGAGCGTGAGTTCCTCACTT
GGGCAAAACCCTTCACCTGCCAAGAATGAGTTTCTTCCTTGCACCAGGGA
TC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig556:8208..9159-

>mRNA_P-wetherbeei_contig556.3.1 ID=mRNA_P-wetherbeei_contig556.3.1|Name=mRNA_P-wetherbeei_contig556.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=453bp|location=Sequence derived from alignment at P-wetherbeei_contig556:8208..9159- (Phaeothamnion wetherbeei SAG_119_79)
ATGGGTGGCGCCGCGTCAATCCTGCGCCGGCGTAGGGGAGAAGTTGTTTC
ACCCACTAAAGAGAAGGAAGAGGCGAAAGCCGAGGCGAACAAGCCGAATC
AGGAAGATGACGCAAAATCCCTCGAGGAGATCATCTGTCGCCTCATGCAG
GTTCATCACGCTCAAAGCAAGGGAGACCGCTGGGAAAAGGTAACAAAGAA
AGTGAATCAATACCTGAAGCGCCGTCGGATCCCTACCCAGTCCATAAAGG
ACGCGATACGTAGAGAGGGTGTCGAGTTGCCAACGTGCTGGCAGCTCGAA
GAGATCAAAGAGCGCGAGCGCAAGCTGGCGGAGGCTCTTCATGGCAAACA
GGTTCGGTTCAGCCAACGGCTTCCTTCCTGTGTTTTAAAATGTAGCAGAC
AGACTTCCACCACCTGGGGCTGGTTGCTGCGGCAGATGAGCACAAGTTAC
TGA
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