mRNA_P-wetherbeei_contig556.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig556.1.1
Unique NamemRNA_P-wetherbeei_contig556.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig556.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig556contigP-wetherbeei_contig556:2844..3976 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1003
Hectar predicted targeting categoryother localisation
Exons2
Cds size528
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186827.8784146-UTR-P-wetherbeei_contig556:2843..31501683186827.8784146-UTR-P-wetherbeei_contig556:2843..3150Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig556 2844..3150 +
1683186827.902791-UTR-P-wetherbeei_contig556:3808..39761683186827.902791-UTR-P-wetherbeei_contig556:3808..3976Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig556 3809..3976 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186827.886858-CDS-P-wetherbeei_contig556:3150..32251683186827.886858-CDS-P-wetherbeei_contig556:3150..3225Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig556 3151..3225 +
1683186827.895006-CDS-P-wetherbeei_contig556:3355..38081683186827.895006-CDS-P-wetherbeei_contig556:3355..3808Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig556 3356..3808 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig556.1.1prot_P-wetherbeei_contig556.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig556 3151..3808 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig556.1.1

>prot_P-wetherbeei_contig556.1.1 ID=prot_P-wetherbeei_contig556.1.1|Name=mRNA_P-wetherbeei_contig556.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=176bp
MLAISRDREPTERECDEMFADIDKEQRRSFLRGWTATKRRPQPKFLGHSL
ARRTTSRSRSAWIHSTTSTRSSRRWTLGTSSTSSCWATSDFSSSGKSTTM
SPCILWRNCGRRRLTSSCAISPSLFGKLTFPTAKLRWHQAFGAGSAAVRH
GAVRGRLVNTHARAPRPVAGSNGSG*
back to top

mRNA from alignment at P-wetherbeei_contig556:2844..3976+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig556.1.1 ID=mRNA_P-wetherbeei_contig556.1.1|Name=mRNA_P-wetherbeei_contig556.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1133bp|location=Sequence derived from alignment at P-wetherbeei_contig556:2844..3976+ (Phaeothamnion wetherbeei SAG_119_79)
CTGCCGCAGTACCGTCCCAAGGCACACATGGGAGAAGGAATGTATAACAG
TTTCGTCTTCTTCTGCTTCTCTCGGACCTGCAACCGGCGCACATTCTCAT
TTCGTGGTGGAAACTTCGCAATGCGGTTCGCCCTGAACTTCGTTTTCTTA
CTCGTTACCTTTTCTGGCACGACAGCGGCGTTCGTTTCCGCGCGTGGGCT
TCACCAAACCCAGAACGCAAAAGAGGGCGTTCGCAGCCAAAGTTTGGCCA
AGTTCGCGCGAGGAGGAGGACCGAAGAGCAAAGGAAGGCCTTGACAATCA
TAGGCACATGTTGGCCATTTCGCGAGACCGAGAACCTACGGAACGGGAAT
GCGACGAGATGTTCGCGGACATCGACAAGGAGGTAAAGGAGATTGACACC
CTTCACGCAGAGCTACTTCTTCCTGCTTCTCGTTTGGAAGGTCTCCGGCG
TCGCCGCCTCGCAGTCGGTTAACCTTGTATCGTCGGCGTCCTTGTCGGCT
TTCCTGCCACAGCAGCGGCGTTCTTTCCTCCGCGGATGGACTGCAACGAA
GCGGCGACCACAGCCAAAGTTTCTTGGCCATTCTCTAGCGAGAAGGACGA
CATCACGAAGTCGGAGCGCTTGGATACATTCAACGACGTCGACAAGGAGC
TCGAGGAGATGGACATTGGGCACATCGTCGACGTCCTCATGCTGGGCTAC
CTCTGACTTTTCCTCGTCTGGAAAGTCGACAACGATGTCACCTTGCATTT
TGTGGCGAAACTGCGGCAGGCGGAGGTTGACGAGCTCGTGCGCAATCTCT
CCGAGTTTGTTTGGTAAGCTTACATTTCCCACGGCGAAGTTGCGGTGGCA
TCAAGCGTTTGGCGCCGGGTCAGCGGCGGTACGGCATGGTGCCGTTCGCG
GCCGGTTGGTGAATACTCACGCGAGAGCACCACGGCCGGTCGCCGGCAGC
AATGGCAGCGGCTAATTGTGGGACATTGTCTGGATTGGGGCTAAACCGGC
GCGCTTGCGCGATGGCACCGGAAGCCCTGCGGATTCAGCCGCATGAAAGC
TTGGTATCGCGTAGAGAGTAATAAATCCCGTGAACACCGCCCGGGTTATT
AAAGAACCTCAAAACTCTAACAGCAGAATCACC
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig556:2844..3976+

>mRNA_P-wetherbeei_contig556.1.1 ID=mRNA_P-wetherbeei_contig556.1.1|Name=mRNA_P-wetherbeei_contig556.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=528bp|location=Sequence derived from alignment at P-wetherbeei_contig556:2844..3976+ (Phaeothamnion wetherbeei SAG_119_79)
ATGTTGGCCATTTCGCGAGACCGAGAACCTACGGAACGGGAATGCGACGA
GATGTTCGCGGACATCGACAAGGAGCAGCGGCGTTCTTTCCTCCGCGGAT
GGACTGCAACGAAGCGGCGACCACAGCCAAAGTTTCTTGGCCATTCTCTA
GCGAGAAGGACGACATCACGAAGTCGGAGCGCTTGGATACATTCAACGAC
GTCGACAAGGAGCTCGAGGAGATGGACATTGGGCACATCGTCGACGTCCT
CATGCTGGGCTACCTCTGACTTTTCCTCGTCTGGAAAGTCGACAACGATG
TCACCTTGCATTTTGTGGCGAAACTGCGGCAGGCGGAGGTTGACGAGCTC
GTGCGCAATCTCTCCGAGTTTGTTTGGTAAGCTTACATTTCCCACGGCGA
AGTTGCGGTGGCATCAAGCGTTTGGCGCCGGGTCAGCGGCGGTACGGCAT
GGTGCCGTTCGCGGCCGGTTGGTGAATACTCACGCGAGAGCACCACGGCC
GGTCGCCGGCAGCAATGGCAGCGGCTAA
back to top