mRNA_P-wetherbeei_contig55588.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig55588.1.1
Unique NamemRNA_P-wetherbeei_contig55588.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig55588.1.1 vs. uniprot
Match: UPI00191DC8E9 (translocation/assembly module TamB domain-containing protein n=1 Tax=Chryseolinea sp. Jin1 TaxID=2801331 RepID=UPI00191DC8E9)

HSP 1 Score: 224 bits (570), Expect = 1.500e-64
Identity = 116/173 (67.05%), Postives = 142/173 (82.08%), Query Frame = 1
Query:    1 FNMFGPVVFTEGGYNFTLYDIINKEFKIESGSSITWYGDPYQGQMRINASYNQLATLRDILPYTDQAILNSPPIKRKYPVQVILKLDGPMLSPQIDFDILARDLPKSVTASVTGGGSQPINLVDQFQAFKSRLDEQEMKRQVFSLIMLRRFSPPEQFNTSGSLVSSVSELFSN 519
            FNM+GP  FTEG YNFTLYDIINKEF+I+ GS ITW+GDPYQ  M INASYNQLA+L  ++   D ++ NSP ++RKYPVQV+L L GPMLSP I+FDI+A+DLP++V   +T  G+  +NL  QF AFK++LDEQE+KRQVFSLI+LRRFSPPE FNTSGS+VSS+SEL SN
Sbjct: 1202 FNMYGPFEFTEGWYNFTLYDIINKEFEIQKGSRITWFGDPYQAVMDINASYNQLASLLPLV--NDPSVANSPQLRRKYPVQVLLALTGPMLSPLINFDIVAKDLPQNV---ITENGAVNLNL--QFTAFKNKLDEQELKRQVFSLIVLRRFSPPESFNTSGSVVSSLSELLSN 1367          
BLAST of mRNA_P-wetherbeei_contig55588.1.1 vs. uniprot
Match: A0A1M5U5R3_9BACT (Uncharacterized protein n=2 Tax=Chryseolinea TaxID=1433993 RepID=A0A1M5U5R3_9BACT)

HSP 1 Score: 219 bits (557), Expect = 8.410e-63
Identity = 117/173 (67.63%), Postives = 138/173 (79.77%), Query Frame = 1
Query:    1 FNMFGPVVFTEGGYNFTLYDIINKEFKIESGSSITWYGDPYQGQMRINASYNQLATLRDILPYTDQAILNSPPIKRKYPVQVILKLDGPMLSPQIDFDILARDLPKSVTASVTGGGSQPINLVDQFQAFKSRLDEQEMKRQVFSLIMLRRFSPPEQFNTSGSLVSSVSELFSN 519
            FNM+GP  FTEG YNFTLYDIINKEF I+ GS ITW+GDPYQ  M INASYNQLA+L  I+   D A  N+P +KRKYPVQV+L L GPMLSP I+FDI+A+DLP +VT   T  GS  +NL   F AFK++LDEQE+KRQVFSLI+LRRFSPP+ FNTSG++VSS+SEL SN
Sbjct: 1201 FNMYGPFEFTEGWYNFTLYDIINKEFDIQKGSRITWFGDPYQAIMDINASYNQLASLLPIV--NDPATANAPQLKRKYPVQVLLALTGPMLSPLINFDIVAKDLPTNVT---TESGS--VNLQLAFTAFKNKLDEQELKRQVFSLIVLRRFSPPDAFNTSGTVVSSLSELLSN 1366          
BLAST of mRNA_P-wetherbeei_contig55588.1.1 vs. uniprot
Match: A0A3B8W0S6_9BACT (Translocation/assembly module TamB (Fragment) n=1 Tax=Cytophagales bacterium TaxID=2053541 RepID=A0A3B8W0S6_9BACT)

HSP 1 Score: 196 bits (499), Expect = 1.420e-59
Identity = 105/174 (60.34%), Postives = 129/174 (74.14%), Query Frame = 1
Query:    1 FNMFGPVVFTEGGYNFTLYDIINKEFKIESGSSITWYGDPYQGQMRINASYNQLATLRDILPYTDQAILNSPPIKRKYPVQVILKLDGPMLSPQIDFDILARDLPKSVTASVTGGGSQPINLVDQFQAFKSRLDEQEMKRQVFSLIMLRRFSP-PEQFNTSGSLVSSVSELFSN 519
            FNMFG   F  G YNFTLY+IINKEF I  GS I+WYGDPY G + + ASY Q  +L  I+  ++QA+ NSP ++RKYP++V+LKLDGPMLSPQI FDI A+DLP++V     G     + L  +F AFKS+LDEQE+KRQVFSLI+LRRFSP  E  NTSGS+ +SVSEL SN
Sbjct:   56 FNMFGVYEFERGFYNFTLYNIINKEFSINKGSRISWYGDPYGGLLSLVASYRQTTSLAPIV--SNQAVANSPGLRRKYPIEVMLKLDGPMLSPQIGFDIAAKDLPRNVVVDELG---TTVKLEFEFDAFKSKLDEQELKRQVFSLIVLRRFSPIGESINTSGSIYNSVSELLSN 224          
BLAST of mRNA_P-wetherbeei_contig55588.1.1 vs. uniprot
Match: A0A1T5MFJ2_9BACT (Uncharacterized protein n=2 Tax=Ohtaekwangia koreensis TaxID=688867 RepID=A0A1T5MFJ2_9BACT)

HSP 1 Score: 207 bits (527), Expect = 9.130e-59
Identity = 107/175 (61.14%), Postives = 136/175 (77.71%), Query Frame = 1
Query:    1 FNMFGPVVFTEGGYNFTLYDIINKEFKIESGSSITWYGDPYQGQMRINASYNQLATLRDILPYTDQAI--LNSPPIKRKYPVQVILKLDGPMLSPQIDFDILARDLPKSVTASVTGGGSQPINLVDQFQAFKSRLDEQEMKRQVFSLIMLRRFSPPEQFNTSGSLVSSVSELFSN 519
            FNMFGP  FTEG YNFTLYDIINKEF I+ GS ITWYGDPY+  + I+A+YNQLA+   +   +D +I    SP ++R+YPV V+L LDGPMLSP+I+FDI A+DLPK++  +     +Q INL   F AFK++LDEQE+KRQVFSLI+LR+FSP E  +TSGS+V+S+SELFSN
Sbjct: 1203 FNMFGPFEFTEGWYNFTLYDIINKEFLIKKGSRITWYGDPYKATVDIDATYNQLASFAPLATMSDPSINITESPQLQRRYPVMVLLSLDGPMLSPEINFDITAKDLPKNIQTN-----TQAINLDLLFTAFKNKLDEQELKRQVFSLIVLRKFSPAESLSTSGSVVNSLSELFSN 1372          
BLAST of mRNA_P-wetherbeei_contig55588.1.1 vs. uniprot
Match: A0A136LZV3_9BACT (Uncharacterized protein n=2 Tax=Bacteroidetes TaxID=976 RepID=A0A136LZV3_9BACT)

HSP 1 Score: 202 bits (513), Expect = 1.320e-57
Identity = 105/173 (60.69%), Postives = 132/173 (76.30%), Query Frame = 1
Query:    1 FNMFGPVVFTEGGYNFTLYDIINKEFKIESGSSITWYGDPYQGQMRINASYNQLATLRDILPYTDQAILNSPPIKRKYPVQVILKLDGPMLSPQIDFDILARDLPKSVTASVTGGGSQPINLVDQFQAFKSRLDEQEMKRQVFSLIMLRRFSPPEQFNTSGSLVSSVSELFSN 519
            FNMFG   F +G YNFTLYDIINKEF I  GS I+WYGDPY G + ++ASY Q+A+L  ILP   +    S  ++RKYPV+V+L+LDGPMLSPQI FDI A++LP ++TA    G S  +N    F+AFK++LDEQE+KRQVFSLI+LRRFSPP+ F+TSGS+ +SVSEL SN
Sbjct:  486 FNMFGLYEFEQGYYNFTLYDIINKEFSITKGSRISWYGDPYGGVLDLHASYRQMASLGPILPDQSEETQTSSQVRRKYPVEVLLELDGPMLSPQIAFDIDAKNLPDNITAD--NGNSVQLNFA--FKAFKAKLDEQELKRQVFSLIILRRFSPPDAFSTSGSISNSVSELLSN 654          
BLAST of mRNA_P-wetherbeei_contig55588.1.1 vs. uniprot
Match: A0A7Y5D202_9BACT (Uncharacterized protein n=1 Tax=Cyclobacteriaceae bacterium TaxID=2099675 RepID=A0A7Y5D202_9BACT)

HSP 1 Score: 204 bits (518), Expect = 1.480e-57
Identity = 106/173 (61.27%), Postives = 133/173 (76.88%), Query Frame = 1
Query:    1 FNMFGPVVFTEGGYNFTLYDIINKEFKIESGSSITWYGDPYQGQMRINASYNQLATLRDILPYTDQAILNSPPIKRKYPVQVILKLDGPMLSPQIDFDILARDLPKSVTASVTGGGSQPINLVDQFQAFKSRLDEQEMKRQVFSLIMLRRFSPPEQFNTSGSLVSSVSELFSN 519
            FNMFG + FTEG YNFTL DIINKEF I  GSSITW+GDPYQ  + I ASY QL +L  IL   DQ ++N P IKRKYPV+V+LKLDG MLSP  ++DI A++LP +VTA+ +G   + +NL  +F AF+++LDEQE+KRQVFSLI+LR+ SP + F+T GSL +SVSEL SN
Sbjct: 1206 FNMFGSLAFTEGAYNFTLADIINKEFSIRPGSSITWFGDPYQAILNITASYRQLTSLGPIL--ADQTLVNDPNIKRKYPVEVLLKLDGAMLSPVFNYDIEAKNLPDNVTAATSG---KSVNLKFEFNAFRAKLDEQELKRQVFSLIILRKLSPLDAFDTGGSLYNSVSELLSN 1373          
BLAST of mRNA_P-wetherbeei_contig55588.1.1 vs. uniprot
Match: A0A7L9BK82_9BACT (Translocation/assembly module TamB n=1 Tax=Flammeovirgaceae bacterium TaxID=2026740 RepID=A0A7L9BK82_9BACT)

HSP 1 Score: 203 bits (516), Expect = 2.750e-57
Identity = 108/174 (62.07%), Postives = 134/174 (77.01%), Query Frame = 1
Query:    1 FNMFGPVVFTEGGYNFTLYDIINKEFKIESGSSITWYGDPYQGQMRINASYNQLATLRDILPYTDQAILNSPPIKRKYPVQVILKLDGPMLSPQIDFDILARDLPKSVTASVTGGGSQPINLVDQFQAFKSRLDEQEMKRQVFSLIMLRRFSPPEQ-FNTSGSLVSSVSELFSN 519
            FNMFGP+ FTEG YNFTLYDIINKEF+++ GS ITWYGDPYQ  + I+A+YNQLA+L  IL  +D  +     IKRKYPVQV+LKL+GPML+PQI FDI A+DLPKS+       G  P+ L  +F +FKS++DEQE+K+QVFSLI+LRRFSP E   + SGS+ +SVSEL SN
Sbjct: 1200 FNMFGPLEFTEGWYNFTLYDIINKEFQVKPGSRITWYGDPYQAVLNIDAAYNQLASLAPIL--SDPTLSEVTQIKRKYPVQVLLKLEGPMLAPQITFDIDAKDLPKSIPVD----GRPPVALDLEFYSFKSKMDEQELKKQVFSLIILRRFSPLESSISMSGSVANSVSELLSN 1367          
BLAST of mRNA_P-wetherbeei_contig55588.1.1 vs. uniprot
Match: A0A401U717_9BACT (Uncharacterized protein n=1 Tax=Chryseotalea sanaruensis TaxID=2482724 RepID=A0A401U717_9BACT)

HSP 1 Score: 197 bits (502), Expect = 2.100e-55
Identity = 107/174 (61.49%), Postives = 136/174 (78.16%), Query Frame = 1
Query:    1 FNMFGPVVFTEGGYNFTLYDIINKEFKIESGSSITWYGDPYQGQMRINASYNQLATLRDILPYTDQAILNSPPIKRKYPVQVILKLDGPMLSPQIDFDILARDLPKSVTASVTGGGSQPINLVDQFQAFKSRLDEQEMKRQVFSLIMLRRFSP-PEQFNTSGSLVSSVSELFSN 519
            F+MFG +VF EGGYNFTLY++INKEF I+ GS ITW GDPYQGQM I A+YNQLA++  I+   D    N P +KRKYP+QV+L L+G MLSPQI+FDI+ARDLP++VT  +T G S+   L  +F AFK++LDEQE+K+QVFSLI+LRR SP  E  +T+GS+ +SVSEL SN
Sbjct: 1195 FSMFGGIVFEEGGYNFTLYNLINKEFDIQKGSRITWSGDPYQGQMSIKAAYNQLASIAPII--IDAENQNDPVLKRKYPLQVLLSLEGAMLSPQINFDIIARDLPQTVT--LTNGISK--RLAFEFAAFKTKLDEQELKKQVFSLIILRRLSPLNETISTTGSVTNSVSELLSN 1362          
BLAST of mRNA_P-wetherbeei_contig55588.1.1 vs. uniprot
Match: UPI001A09E292 (DUF490 domain-containing protein n=1 Tax=Cytophagales bacterium WSM2-2 TaxID=2774202 RepID=UPI001A09E292)

HSP 1 Score: 197 bits (502), Expect = 2.100e-55
Identity = 105/174 (60.34%), Postives = 130/174 (74.71%), Query Frame = 1
Query:    1 FNMFGPVVFTEGGYNFTLYDIINKEFKIESGSSITWYGDPYQGQMRINASYNQLATLRDILPYTDQA-ILNSPPIKRKYPVQVILKLDGPMLSPQIDFDILARDLPKSVTASVTGGGSQPINLVDQFQAFKSRLDEQEMKRQVFSLIMLRRFSPPEQFNTSGSLVSSVSELFSN 519
            FNMFG   F  G YNFTLYDIINKEF I  GS ITW GDPY+G + INASY QL +L  I+     A + N P ++RKYPV+V LK++G M+SPQI+FDI+A DLP SV   +  G ++P+N  + F+A+K++L+EQE+KRQVFSLIMLRRFSP + F T GSL SSVSELFSN
Sbjct: 1207 FNMFGFYEFERGNYNFTLYDIINKEFNINKGSRITWLGDPYEGILNINASYKQLVSLAPIVAAQSGATVANQPAMRRKYPVEVQLKIEGAMMSPQINFDIVANDLPNSVV--LDNGTAEPLN--NDFKAYKAQLNEQELKRQVFSLIMLRRFSPQDAFATGGSLYSSVSELFSN 1376          
BLAST of mRNA_P-wetherbeei_contig55588.1.1 vs. uniprot
Match: A0A3D6EQU9_9BACT (Translocation/assembly module TamB (Fragment) n=1 Tax=Cytophagales bacterium TaxID=2053541 RepID=A0A3D6EQU9_9BACT)

HSP 1 Score: 193 bits (490), Expect = 5.510e-54
Identity = 100/173 (57.80%), Postives = 131/173 (75.72%), Query Frame = 1
Query:    1 FNMFGPVVFTEGGYNFTLYDIINKEFKIESGSSITWYGDPYQGQMRINASYNQLATLRDILPYTDQAILNSPPIKRKYPVQVILKLDGPMLSPQIDFDILARDLPKSVTASVTGGGSQPINLVDQFQAFKSRLDEQEMKRQVFSLIMLRRFSPPEQFNTSGSLVSSVSELFSN 519
            FNMFG   F +G YNFTL+DIINKEF I  GS ++W+GDPY G + + ASY Q+A++  ILP   +A   S  ++RKYPV+V+LKLDGPMLSPQI FDI A++LP +VTA    G +  +N    F+AFK++LDEQE++RQVFS+I+LRRFSP + F+TSGS+ +SVSEL SN
Sbjct:  672 FNMFGLYEFEQGYYNFTLFDIINKEFTITKGSRLSWFGDPYSGVLDLKASYKQMASIGPILPDQSEATQASAQVRRKYPVEVLLKLDGPMLSPQIAFDIDAKNLPDNVTAD--NGSNVQLNFA--FKAFKAKLDEQELQRQVFSIIILRRFSPLDAFSTSGSISNSVSELLSN 840          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig55588.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI00191DC8E91.500e-6467.05translocation/assembly module TamB domain-containi... [more]
A0A1M5U5R3_9BACT8.410e-6367.63Uncharacterized protein n=2 Tax=Chryseolinea TaxID... [more]
A0A3B8W0S6_9BACT1.420e-5960.34Translocation/assembly module TamB (Fragment) n=1 ... [more]
A0A1T5MFJ2_9BACT9.130e-5961.14Uncharacterized protein n=2 Tax=Ohtaekwangia koree... [more]
A0A136LZV3_9BACT1.320e-5760.69Uncharacterized protein n=2 Tax=Bacteroidetes TaxI... [more]
A0A7Y5D202_9BACT1.480e-5761.27Uncharacterized protein n=1 Tax=Cyclobacteriaceae ... [more]
A0A7L9BK82_9BACT2.750e-5762.07Translocation/assembly module TamB n=1 Tax=Flammeo... [more]
A0A401U717_9BACT2.100e-5561.49Uncharacterized protein n=1 Tax=Chryseotalea sanar... [more]
UPI001A09E2922.100e-5560.34DUF490 domain-containing protein n=1 Tax=Cytophaga... [more]
A0A3D6EQU9_9BACT5.510e-5457.80Translocation/assembly module TamB (Fragment) n=1 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig55588contigP-wetherbeei_contig55588:3..521 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog1237149.C900_04102
PFAMsTamB
Model size519
Max annot lvl976|Bacteroidetes
Hectar predicted targeting categoryother localisation
Exons1
Evalue4.72e-52
EggNOG OGsCOG2911@1|root,COG2911@2|Bacteria,4NF7F@976|Bacteroidetes,47KQP@768503|Cytophagia
DescriptionPFAM Family of
Cds size513
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186827.7229767-CDS-P-wetherbeei_contig55588:2..5151683186827.7229767-CDS-P-wetherbeei_contig55588:2..515Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig55588 3..515 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186827.7346332-UTR-P-wetherbeei_contig55588:515..5211683186827.7346332-UTR-P-wetherbeei_contig55588:515..521Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig55588 516..521 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig55588.1.1prot_P-wetherbeei_contig55588.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig55588 3..515 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig55588.1.1

>prot_P-wetherbeei_contig55588.1.1 ID=prot_P-wetherbeei_contig55588.1.1|Name=mRNA_P-wetherbeei_contig55588.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=171bp
MFGPVVFTEGGYNFTLYDIINKEFKIESGSSITWYGDPYQGQMRINASYN
QLATLRDILPYTDQAILNSPPIKRKYPVQVILKLDGPMLSPQIDFDILAR
DLPKSVTASVTGGGSQPINLVDQFQAFKSRLDEQEMKRQVFSLIMLRRFS
PPEQFNTSGSLVSSVSELFSN
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mRNA from alignment at P-wetherbeei_contig55588:3..521-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig55588.1.1 ID=mRNA_P-wetherbeei_contig55588.1.1|Name=mRNA_P-wetherbeei_contig55588.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=519bp|location=Sequence derived from alignment at P-wetherbeei_contig55588:3..521- (Phaeothamnion wetherbeei SAG_119_79)
TTCAACATGTTCGGACCTGTTGTTTTCACAGAAGGCGGTTATAATTTCAC ACTCTATGACATTATCAATAAAGAATTTAAAATAGAATCCGGCAGCAGCA TTACCTGGTATGGCGATCCGTATCAAGGCCAGATGAGAATTAATGCATCG TATAATCAATTAGCCACGTTAAGAGACATTCTTCCTTATACAGATCAGGC AATATTAAATTCTCCACCTATAAAAAGAAAATATCCTGTACAAGTAATTC TTAAGCTAGATGGCCCGATGTTATCTCCCCAAATTGACTTTGACATTCTT GCGCGGGATCTTCCCAAGTCAGTTACAGCCTCAGTAACCGGTGGCGGAAG TCAACCCATTAATCTTGTGGATCAATTCCAGGCATTTAAAAGCAGGCTGG ATGAACAAGAAATGAAGCGGCAAGTGTTCAGCTTGATCATGCTTCGCAGA TTTTCGCCCCCGGAACAGTTTAACACGAGTGGATCGCTTGTTAGCAGTGT AAGCGAATTGTTTTCTAAT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig55588:3..521-

>mRNA_P-wetherbeei_contig55588.1.1 ID=mRNA_P-wetherbeei_contig55588.1.1|Name=mRNA_P-wetherbeei_contig55588.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=513bp|location=Sequence derived from alignment at P-wetherbeei_contig55588:3..521- (Phaeothamnion wetherbeei SAG_119_79)
ATGTTCGGACCTGTTGTTTTCACAGAAGGCGGTTATAATTTCACACTCTA
TGACATTATCAATAAAGAATTTAAAATAGAATCCGGCAGCAGCATTACCT
GGTATGGCGATCCGTATCAAGGCCAGATGAGAATTAATGCATCGTATAAT
CAATTAGCCACGTTAAGAGACATTCTTCCTTATACAGATCAGGCAATATT
AAATTCTCCACCTATAAAAAGAAAATATCCTGTACAAGTAATTCTTAAGC
TAGATGGCCCGATGTTATCTCCCCAAATTGACTTTGACATTCTTGCGCGG
GATCTTCCCAAGTCAGTTACAGCCTCAGTAACCGGTGGCGGAAGTCAACC
CATTAATCTTGTGGATCAATTCCAGGCATTTAAAAGCAGGCTGGATGAAC
AAGAAATGAAGCGGCAAGTGTTCAGCTTGATCATGCTTCGCAGATTTTCG
CCCCCGGAACAGTTTAACACGAGTGGATCGCTTGTTAGCAGTGTAAGCGA
ATTGTTTTCTAAT
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