mRNA_P-wetherbeei_contig5558.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig5558.1.1
Unique NamemRNA_P-wetherbeei_contig5558.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5558.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig5558contigP-wetherbeei_contig5558:74..1029 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size501
Hectar predicted targeting categoryother localisation
Exons2
Cds size327
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186827.6249514-UTR-P-wetherbeei_contig5558:73..1221683186827.6249514-UTR-P-wetherbeei_contig5558:73..122Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig5558 74..122 +
1683186827.6490958-UTR-P-wetherbeei_contig5558:904..10291683186827.6490958-UTR-P-wetherbeei_contig5558:904..1029Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig5558 905..1029 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186827.6333811-CDS-P-wetherbeei_contig5558:122..1601683186827.6333811-CDS-P-wetherbeei_contig5558:122..160Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5558 123..160 +
1683186827.6412776-CDS-P-wetherbeei_contig5558:615..9041683186827.6412776-CDS-P-wetherbeei_contig5558:615..904Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5558 616..904 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig5558.1.1prot_P-wetherbeei_contig5558.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig5558 123..904 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig5558.1.1

>prot_P-wetherbeei_contig5558.1.1 ID=prot_P-wetherbeei_contig5558.1.1|Name=mRNA_P-wetherbeei_contig5558.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=109bp
MPSLLQSTPRQTGKPRRAAGAIPPLRVGLGGWGGAGCRGHSDRQHQSQAP
GKNGEGRGYSKYTGGRTGNKGYFGKVGIFPCRKAEVGVPDHKALEGLKAR
FVSNRNKP*
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mRNA from alignment at P-wetherbeei_contig5558:74..1029+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig5558.1.1 ID=mRNA_P-wetherbeei_contig5558.1.1|Name=mRNA_P-wetherbeei_contig5558.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=956bp|location=Sequence derived from alignment at P-wetherbeei_contig5558:74..1029+ (Phaeothamnion wetherbeei SAG_119_79)
GCATTGTTCAAGGGAGTGGTGCCGCCCATCGCGACGGCCGCCATCGTGAA
TGCCATCACTTTTACAGTCTACGCCGAGACAAACCGGGTGAGGCGGACGC
CGTGTTGGTTTGTCATTCTTTATTGGAGCGCTTCGCGCTTCGCGAAAGAG
TTCGCCTTTTCTCGTGGAAACTCAAAAGCGCGGTGGTACATTTTCGTGTT
AGCCGGCCGCCAAACTGCGTTTTTATTTTGAACCAATGCGGTGAAGGACT
TTGGATGGGTACGACGCGACAGTTTCTACTGCGACGGCACTGTCGCACAT
TGCTTAGCCAAGAAGAGAAATGGCAATGTCAAATACTTTTCCTAAACTCC
CAGCCTCCTCCTCCTCATTGCCTCCTCCTCCTCATTTCCTGCCCCTGCCG
CTCCCGCCGCTTCCCCATCACGGCCGCTGCTGCCTCCGCCGTACCACCAC
CGCCGCCGCCGCCGCCTCCATCGCCCCCACCGCTGCCATCGCCACTGTCG
CCGCTGTCGGGGCTGAATGGCAGTGGTGGCTGCCGCGTACAGGAAGCCCC
GCCGGGCGGCTGGAGCTATACCACCACTTCGTGTCGGGCTCGGTGGCTGG
GGCGGTGCAGGCTGTCGTGGTCATTCCGACCGACAACATCAAAGTCAAGC
TCCAGGCAAGAATGGAGAGGGTCGGGGTTACTCAAAGTATACCGGGGGGA
GAACAGGAAACAAAGGATATTTTGGAAAAGTTGGCATTTTCCCCTGCAGG
AAAGCTGAAGTGGGCGTTCCGGATCATAAAGCACTTGAAGGACTAAAGGC
TAGGTTTGTTTCGAACCGAAACAAACCGTAGGCCATCATCCTCCCATCTT
TTTTGTGACACCATTTTGCAGGTCCAGGAGGGCGCCATAACGGGGCCGGG
ACGGAGAGCCCTGCAGTTCAAGGGGTCCATTGACTGCGCACGGCAAGTCC
TCGCCA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig5558:74..1029+

>mRNA_P-wetherbeei_contig5558.1.1 ID=mRNA_P-wetherbeei_contig5558.1.1|Name=mRNA_P-wetherbeei_contig5558.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=327bp|location=Sequence derived from alignment at P-wetherbeei_contig5558:74..1029+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCCATCACTTTTACAGTCTACGCCGAGACAAACCGGGAAGCCCCGCCG
GGCGGCTGGAGCTATACCACCACTTCGTGTCGGGCTCGGTGGCTGGGGCG
GTGCAGGCTGTCGTGGTCATTCCGACCGACAACATCAAAGTCAAGCTCCA
GGCAAGAATGGAGAGGGTCGGGGTTACTCAAAGTATACCGGGGGGAGAAC
AGGAAACAAAGGATATTTTGGAAAAGTTGGCATTTTCCCCTGCAGGAAAG
CTGAAGTGGGCGTTCCGGATCATAAAGCACTTGAAGGACTAAAGGCTAGG
TTTGTTTCGAACCGAAACAAACCGTAG
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