mRNA_P-wetherbeei_contig55563.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig55563.1.1
Unique NamemRNA_P-wetherbeei_contig55563.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig55563.1.1 vs. uniprot
Match: A0A7C2LU04_9HYPH (Uncharacterized protein n=1 Tax=Hyphomicrobiales bacterium TaxID=1909294 RepID=A0A7C2LU04_9HYPH)

HSP 1 Score: 142 bits (358), Expect = 1.030e-40
Identity = 74/148 (50.00%), Postives = 96/148 (64.86%), Query Frame = 1
Query:    1 MTLRRDHIAGIGLIGLAVAVLALGQELPFGTSASPGPGMLPVLCAGLMLALAIVVLLRAGESPPFSEIAWDDIPHALLVIVAASGAAALYTTLGFPITFGLLLFGLTYGVERMPLATTAAVTAVMTGGAYWLLGTLLKTPMPLGIFGF 444
            MT+RRDH+AG  +IG    +LA+  +LPFGT ASPG GMLP      ++ L +V++  AG SP  +E++W D+PHAL V+  A+GAAALYT LGF  T  LLL  LT+ VE  PL   A   A +TG A+ L  TLL+TP+P G   F
Sbjct:    1 MTVRRDHVAGGAVIGAGAVLLAVSVDLPFGTLASPGAGMLPKAVIAAIIGLGLVIVAGAGASPRLAEMSWGDLPHALRVLAVAAGAAALYTVLGFIPTVFLLLLALTFAVEGKPLLNAALFAAGVTGLAFALFSTLLRTPLPRGSVWF 148          
BLAST of mRNA_P-wetherbeei_contig55563.1.1 vs. uniprot
Match: A0A537RVV8_9PROT (Tripartite tricarboxylate transporter TctB family protein n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A537RVV8_9PROT)

HSP 1 Score: 140 bits (352), Expect = 2.990e-39
Identity = 71/146 (48.63%), Postives = 92/146 (63.01%), Query Frame = 1
Query:    7 LRRDHIAGIGLIGLAVAVLALGQELPFGTSASPGPGMLPVLCAGLMLALAIVVLLRAGESPPFSEIAWDDIPHALLVIVAASGAAALYTTLGFPITFGLLLFGLTYGVERMPLATTAAVTAVMTGGAYWLLGTLLKTPMPLGIFGF 444
            LRRDH+AG   +   + V A+  +LP G+ A PG GM+P L   LMLA  ++VLLRAGESPP +E++W D+PHA  VI   +   ALY  LGF  T  LLLF L + VER P+   A  +  +T  AY L GTLLK+P+P G+  F
Sbjct:   46 LRRDHLAGGVFVAAGLLVFAVSGDLPVGSMAMPGAGMMPKLVTSLMLAFGVIVLLRAGESPPLAEVSWADLPHAARVIAVTAAGIALYEPLGFLATMSLLLFSLVFIVERKPILPAAVFSVGVTVFAYVLFGTLLKSPLPRGLLWF 191          
BLAST of mRNA_P-wetherbeei_contig55563.1.1 vs. uniprot
Match: A0A3N5MYD2_9PROT (Tripartite tricarboxylate transporter TctB family protein n=1 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A3N5MYD2_9PROT)

HSP 1 Score: 132 bits (333), Expect = 1.410e-36
Identity = 68/139 (48.92%), Postives = 89/139 (64.03%), Query Frame = 1
Query:   10 RRDHIAGIGLIGLAVAVLALGQELPFGTSASPGPGMLPVLCAGLMLALAIVVLLRAGESPPFSEIAWDDIPHALLVIVAASGAAALYTTLGFPITFGLLLFGLTYGVERMPLATTAAVTAVMTGGAYWLLGTLLKTPMP 426
            RRDH+AG   +GL + + AL  ELPFG+ ASPG GMLP L   LM     ++++RA +SPP + + W D  HA  V+  ++ A  LYT +GF  T  LLLF L Y VER  L   AAV+  +T GAY+L GTLLK+P+P
Sbjct:   31 RRDHVAGGAFVGLGLLLFALSDELPFGSLASPGAGMLPKLVLALMTVFGAILVVRASDSPPIATLDWSDFGHAATVVGVSAVAIGLYTVIGFVPTISLLLFVLLYVVERRSLWRAAAVSIGITLGAYFLFGTLLKSPLP 169          
BLAST of mRNA_P-wetherbeei_contig55563.1.1 vs. uniprot
Match: A0A3N5NBA5_9HYPH (Tripartite tricarboxylate transporter TctB family protein (Fragment) n=1 Tax=Hyphomicrobiaceae bacterium TaxID=2015799 RepID=A0A3N5NBA5_9HYPH)

HSP 1 Score: 125 bits (313), Expect = 7.220e-34
Identity = 72/144 (50.00%), Postives = 85/144 (59.03%), Query Frame = 1
Query:    1 MTLRRDHIAGIGLIGLAVAVLALGQELPFGTSASPGPGMLPVLCAGLMLALAIVVLLRAGESPPFSEIAWDDIPHALLVIVAASGAAALYTTLGFPITFGLLLFGLTYGVERMPLATTAAVTAVMTGGAYWLLGTLLKTPMPLG 432
            M LRRDHIAG   +     VLAL  +LPFGT ASPG GMLP + A LM+  A  +LL AG SPP  E+AW +  HA+ +I   + A ALYT LGF  T  LLL  LT  VER PL    A +   T  AY +  TLL  P+P G
Sbjct:    2 MILRRDHIAGGAFVAGGALVLALSGDLPFGTLASPGAGMLPTVVAVLMMIFAATLLLAAGASPPIGEVAWGNAAHAMRLIGVTAAAIALYTWLGFIATILLLLLVLTILVERKPLLHAVAFSIGATLLAYLVFSTLLNAPLPRG 145          
BLAST of mRNA_P-wetherbeei_contig55563.1.1 vs. uniprot
Match: A0A345ZWG3_9HYPH (Tripartite tricarboxylate transporter TctB family protein n=1 Tax=Pseudolabrys taiwanensis TaxID=331696 RepID=A0A345ZWG3_9HYPH)

HSP 1 Score: 124 bits (310), Expect = 1.940e-33
Identity = 67/148 (45.27%), Postives = 85/148 (57.43%), Query Frame = 1
Query:    1 MTLRRDHIAGIGLIGLAVAVLALGQELPFGTSASPGPGMLPVLCAGLMLALAIVVLLRAGESPPFSEIAWDDIPHALLVIVAASGAAALYTTLGFPITFGLLLFGLTYGVERMPLATTAAVTAVMTGGAYWLLGTLLKTPMPLGIFGF 444
            MTLR DH+AG   I     ++AL  ELPFG  + PG G LP + A L +   + +++RAGESPPF+EIAW D  HALL+    + A ALYT LGF +T   ++  L  GVER P    AA T  +    Y     LLKTP+P G   F
Sbjct:    1 MTLRADHVAGAAFILFGALIIALSGELPFGQLSMPGSGFLPYIVAVLTMLFGLALIVRAGESPPFAEIAWSDGKHALLLTTVTAIAIALYTQLGFVVTMSAMMLILLIGVERRPAPRAAAYTFGVVLVIYLAFEYLLKTPLPSGPLTF 148          
BLAST of mRNA_P-wetherbeei_contig55563.1.1 vs. uniprot
Match: UPI00180ACB07 (Tripartite tricarboxylate transporter TctB family protein n=1 Tax=Rhodoplanes sp. TaxID=1968906 RepID=UPI00180ACB07)

HSP 1 Score: 114 bits (286), Expect = 8.020e-30
Identity = 64/142 (45.07%), Postives = 85/142 (59.86%), Query Frame = 1
Query:    1 MTLRRDHIAGIGLIGLAVAVLALGQELPFGTSASPGPGMLPVLCAGLMLALAIVVLLRAGESPPFSEIAWDDIPHALLVIVAASGAAALYTTLGFPITFGLLLFGLTYGVERMPLATTAAVTAVMTGGAYWLLGTLLKTPMP 426
            M L+RD +AG   +GL  A+ A   +LP G+ A PG GM+P++  GL++ L  V+L+R    P  S   W D  HA+ V+VA + A ALYT LGF IT  LLLFGL   VER  +   AA +  +T  A+ L   LLKTP+P
Sbjct:    1 MRLKRDTVAGGAFVGLGAALWASSGDLPVGSLAMPGAGMVPMIAIGLVMVLGGVLLVRGTAGPSLSADHWSDADHAIRVVVATAIATALYTRLGFLITVPLLLFGLVGLVERRNIVAAAAFSIGVTAVAWLLFAMLLKTPLP 142          
BLAST of mRNA_P-wetherbeei_contig55563.1.1 vs. uniprot
Match: A0A327K7Y9_9HYPH (Uncharacterized protein n=1 Tax=Rhodoplanes elegans TaxID=29408 RepID=A0A327K7Y9_9HYPH)

HSP 1 Score: 111 bits (277), Expect = 1.890e-28
Identity = 62/144 (43.06%), Postives = 82/144 (56.94%), Query Frame = 1
Query:    1 MTLRRDHIAGIGLIGLAVAVLALGQELPFGTSASPGPGMLPVLCAGLMLALAIVVLLRAGESPPFSEIAWDDIPHALLVIVAASGAAALYTTLGFPITFGLLLFGLTYGVERMPLATTAAVTAVMTGGAYWLLGTLLKTPMPLG 432
            MTLRRD +AG   + LA  +  L  +LP G+ A PG GM+P++  GL+     V+L+R   +PP +   W D  HA+ VIV A  A ALYT LG  IT  LLLFGL   VER  +   A     +T   + + G LLK+P+P G
Sbjct:    1 MTLRRDTVAGAAFVVLAGLLWWLSDDLPVGSLAMPGAGMMPMIAIGLVALFGAVLLVRGASTPPITAAHWSDADHAVRVIVFAELATALYTRLGVLITMSLLLFGLVALVERRGILRAAVFAVGVTVTLWAVFGMLLKSPLPTG 144          
BLAST of mRNA_P-wetherbeei_contig55563.1.1 vs. uniprot
Match: A0A327KY39_9HYPH (Uncharacterized protein n=1 Tax=Rhodoplanes roseus TaxID=29409 RepID=A0A327KY39_9HYPH)

HSP 1 Score: 98.6 bits (244), Expect = 1.780e-23
Identity = 55/142 (38.73%), Postives = 78/142 (54.93%), Query Frame = 1
Query:    1 MTLRRDHIAGIGLIGLAVAVLALGQELPFGTSASPGPGMLPVLCAGLMLALAIVVLLRAGESPPFSEIAWDDIPHALLVIVAASGAAALYTTLGFPITFGLLLFGLTYGVERMPLATTAAVTAVMTGGAYWLLGTLLKTPMP 426
            M +RRD +AG+ ++    A+ A   +LP G+ A PG GM+P++   L++    V++ R    P  +   W D  HAL VIVA + A  LYT LGF IT  LLLFGL   VER  +   A  +  +    + L G +LK P+P
Sbjct:    1 MKVRRDVVAGLAVLAGGAALWASSGDLPVGSLAMPGAGMMPMIAIALVMVFGAVLVFRGTAGPRLAADHWSDADHALRVIVATAVATFLYTRLGFLITMSLLLFGLVGLVERRRVLPAALFSLGVALATWLLFGMVLKAPLP 142          
BLAST of mRNA_P-wetherbeei_contig55563.1.1 vs. uniprot
Match: A0A1F7PUL1_9BACT (Uncharacterized protein n=1 Tax=Candidatus Rokubacteria bacterium RIFCSPLOWO2_12_FULL_69_21 TaxID=1802108 RepID=A0A1F7PUL1_9BACT)

HSP 1 Score: 72.8 bits (177), Expect = 2.400e-13
Identity = 47/146 (32.19%), Postives = 71/146 (48.63%), Query Frame = 1
Query:   16 DHIAGIGLIGLAVAVLALGQELPFGTSASPGPGMLPVLCAGLMLALAIVVLLRAGESPPFSEIAWDDIPHALLVIVAASGAAALYTTLGFPITFGLLLFGLTYGVERMPLATTAAVTAVMTGGAYWL---LGTLLKTPMPLGIFGF 444
            D  +G+ L+   +AVL   +  P GT   PGP  LPV+ AG+++ LA++VL+    SP    + W +  H   ++     AA     LG+ +T  ++L  L   VER   A   ++       +YW+   LG LL    P G FGF
Sbjct:   18 DRASGLILVLFGIAVLWESRAFPLGTLGRPGPAFLPVVLAGVLVGLALLVLVFGRRSPRLRSLEWSEAGHVAAILSGCGFAALALERLGYRLTMIVVLAFLLGVVERSRPAVMVSIAVGFALVSYWVFRRLGVLL----PEGPFGF 159          
BLAST of mRNA_P-wetherbeei_contig55563.1.1 vs. uniprot
Match: A0A7W6H9A2_9HYPH (Putative membrane protein YqjE n=1 Tax=Aureimonas pseudogalii TaxID=1744844 RepID=A0A7W6H9A2_9HYPH)

HSP 1 Score: 63.5 bits (153), Expect = 7.320e-10
Identity = 48/142 (33.80%), Postives = 72/142 (50.70%), Query Frame = 1
Query:   16 DHIAGIGLIGLAVAVLALGQELPFGTSASPGPGMLPVLCAGLMLALAIVVLLRAGESPPFSEIAWDDIPHALLVIVAASGAAALYTTLGFPI-TFGLLLFGLTYGVERMPLATTAAVTAVMTGGAYWLLGTLLKTPMPLGIF 438
            D +AG+ LIG+    L  G+ L FGT A  GPG LP +  GL++A+ I VLL+ G   P   +   ++   ++++VA +G A    TLGF + T  LL+ G +   +       A  TAV+T     +    L   MP+  F
Sbjct:   14 DLLAGVLLIGIGALGLWAGRSLAFGTPAMMGPGFLPRVMCGLLIAIGIFVLLK-GVVKPAERMGLVNVKPLVILVVAIAGFAWASETLGFVVATVWLLVIG-SLADQESRWKEIAISTAVLTAAGALVFIEGLGVQMPIWPF 153          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig55563.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 21
Match NameE-valueIdentityDescription
A0A7C2LU04_9HYPH1.030e-4050.00Uncharacterized protein n=1 Tax=Hyphomicrobiales b... [more]
A0A537RVV8_9PROT2.990e-3948.63Tripartite tricarboxylate transporter TctB family ... [more]
A0A3N5MYD2_9PROT1.410e-3648.92Tripartite tricarboxylate transporter TctB family ... [more]
A0A3N5NBA5_9HYPH7.220e-3450.00Tripartite tricarboxylate transporter TctB family ... [more]
A0A345ZWG3_9HYPH1.940e-3345.27Tripartite tricarboxylate transporter TctB family ... [more]
UPI00180ACB078.020e-3045.07Tripartite tricarboxylate transporter TctB family ... [more]
A0A327K7Y9_9HYPH1.890e-2843.06Uncharacterized protein n=1 Tax=Rhodoplanes elegan... [more]
A0A327KY39_9HYPH1.780e-2338.73Uncharacterized protein n=1 Tax=Rhodoplanes roseus... [more]
A0A1F7PUL1_9BACT2.400e-1332.19Uncharacterized protein n=1 Tax=Candidatus Rokubac... [more]
A0A7W6H9A2_9HYPH7.320e-1033.80Putative membrane protein YqjE n=1 Tax=Aureimonas ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig55563contigP-wetherbeei_contig55563:6..452 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog1125973.JNLC01000001_gene83
PFAMsTctB
Model size447
Max annot lvl28211|Alphaproteobacteria
Hectar predicted targeting categorysignal peptide
Exons1
Evalue1.67e-07
EggNOG OGs2D22U@1|root,3160H@2|Bacteria,1N7N1@1224|Proteobacteria,2UH8D@28211|Alphaproteobacteria
DescriptionTripartite tricarboxylate transporter TctB family
Cds size447
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186827.423812-CDS-P-wetherbeei_contig55563:5..4521683186827.423812-CDS-P-wetherbeei_contig55563:5..452Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig55563 6..452 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig55563.1.1prot_P-wetherbeei_contig55563.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig55563 6..452 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig55563.1.1

>prot_P-wetherbeei_contig55563.1.1 ID=prot_P-wetherbeei_contig55563.1.1|Name=mRNA_P-wetherbeei_contig55563.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=149bp
MTLRRDHIAGIGLIGLAVAVLALGQELPFGTSASPGPGMLPVLCAGLMLA
LAIVVLLRAGESPPFSEIAWDDIPHALLVIVAASGAAALYTTLGFPITFG
LLLFGLTYGVERMPLATTAAVTAVMTGGAYWLLGTLLKTPMPLGIFGF*
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mRNA from alignment at P-wetherbeei_contig55563:6..452+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig55563.1.1 ID=mRNA_P-wetherbeei_contig55563.1.1|Name=mRNA_P-wetherbeei_contig55563.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=447bp|location=Sequence derived from alignment at P-wetherbeei_contig55563:6..452+ (Phaeothamnion wetherbeei SAG_119_79)
ATGACGTTGCGCCGTGATCATATTGCAGGCATCGGCTTGATCGGGCTCGC GGTGGCCGTTCTCGCGTTGGGGCAGGAACTGCCGTTCGGCACGTCCGCCT CTCCCGGACCGGGTATGTTGCCGGTGCTGTGCGCAGGCTTGATGCTGGCG CTCGCCATCGTCGTTTTGCTTCGGGCCGGCGAGAGCCCGCCGTTCTCCGA AATCGCCTGGGACGACATTCCCCATGCGCTGCTTGTGATCGTCGCAGCAT CCGGCGCTGCTGCGCTCTATACGACGCTGGGCTTTCCGATCACGTTCGGC CTCCTGCTGTTCGGCCTCACCTACGGCGTGGAACGGATGCCGCTCGCAAC CACTGCTGCCGTCACGGCAGTCATGACGGGCGGCGCCTATTGGCTGCTCG GCACGCTGCTCAAGACGCCGATGCCGCTGGGCATCTTCGGTTTCTAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig55563:6..452+

>mRNA_P-wetherbeei_contig55563.1.1 ID=mRNA_P-wetherbeei_contig55563.1.1|Name=mRNA_P-wetherbeei_contig55563.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=447bp|location=Sequence derived from alignment at P-wetherbeei_contig55563:6..452+ (Phaeothamnion wetherbeei SAG_119_79)
ATGACGTTGCGCCGTGATCATATTGCAGGCATCGGCTTGATCGGGCTCGC
GGTGGCCGTTCTCGCGTTGGGGCAGGAACTGCCGTTCGGCACGTCCGCCT
CTCCCGGACCGGGTATGTTGCCGGTGCTGTGCGCAGGCTTGATGCTGGCG
CTCGCCATCGTCGTTTTGCTTCGGGCCGGCGAGAGCCCGCCGTTCTCCGA
AATCGCCTGGGACGACATTCCCCATGCGCTGCTTGTGATCGTCGCAGCAT
CCGGCGCTGCTGCGCTCTATACGACGCTGGGCTTTCCGATCACGTTCGGC
CTCCTGCTGTTCGGCCTCACCTACGGCGTGGAACGGATGCCGCTCGCAAC
CACTGCTGCCGTCACGGCAGTCATGACGGGCGGCGCCTATTGGCTGCTCG
GCACGCTGCTCAAGACGCCGATGCCGCTGGGCATCTTCGGTTTCTAG
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