mRNA_P-wetherbeei_contig55561.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig55561.1.1
Unique NamemRNA_P-wetherbeei_contig55561.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig55561.1.1 vs. uniprot
Match: A0A6A7KNI3_9PROT (Zinc-binding dehydrogenase n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A6A7KNI3_9PROT)

HSP 1 Score: 188 bits (478), Expect = 7.280e-53
Identity = 91/173 (52.60%), Postives = 119/173 (68.79%), Query Frame = 1
Query:    1 HASLVAAALRAGKAVFVEKPLAISVKGLGEIIKAAEESGNDRLMAGFNRRFAPLLVQLRAAFGESNAPQFFQYRVNAGPSPQDSWYGDRARQGGRIVGEGCHFIDTASFWCGARPLAVMARHTGSDPDDMALMIDYDNGALASINYMTQGDPRYPKELIETSANGLSARLDNF 519
            H+ +V  ALRAGKAVFVEKPLA++ + L ++    E++GNDRLM GFNRRFA +L +LR  +G +  PQ   Y VNAGP    SWYG  A QG R VGEG HFIDT S+W GA P+   A  T  DPD++   + Y +G++A + Y+T GDP+YPKE++E  A+G  AR+DNF
Sbjct:  481 HSFMVCEALRAGKAVFVEKPLAVTPEQLAQVRDTIEQTGNDRLMVGFNRRFAAVLNELRGRWGVAGGPQVVHYTVNAGPLNAGSWYGQTALQGTRFVGEGGHFIDTVSWWLGADPVEAHAIATPDDPDNLIATLTYADGSIAKLAYVTHGDPKYPKEMLEVFADGKVARMDNF 653          
BLAST of mRNA_P-wetherbeei_contig55561.1.1 vs. uniprot
Match: A0A2G6HC06_9ACTO (Oxidoreductase n=1 Tax=Actinomycetales bacterium TaxID=1911520 RepID=A0A2G6HC06_9ACTO)

HSP 1 Score: 183 bits (464), Expect = 5.810e-51
Identity = 94/173 (54.34%), Postives = 116/173 (67.05%), Query Frame = 1
Query:    1 HASLVAAALRAGKAVFVEKPLAISVKGLGEIIKAAEESGNDRLMAGFNRRFAPLLVQLRAAFGESNAPQFFQYRVNAGPSPQDSWYGDRARQGGRIVGEGCHFIDTASFWCGARPLAVMARHTGSDPDDMALMIDYDNGALASINYMTQGDPRYPKELIETSANGLSARLDNF 519
            HA  VA ALRAGKAVFVEKPLA+S + L  ++ A  E+GNDR+M GFNRRF+PLL  +R  FG  ++P   +Y VNAG     SWY D A QG R VGEG HFIDT SFW G  PL V A  TG D   M + + Y +G+LA+I Y T GD R+PKE ++ +  G +AR+DNF
Sbjct:  487 HAQFVADALRAGKAVFVEKPLAVSEEQLQLVLDAIAETGNDRVMVGFNRRFSPLLSGMRRRFGSVDSPLTLRYLVNAGRLDSTSWYLDTAEQGSRFVGEGGHFIDTLSFWVGRDPLRVFAEGTGDD-STMNVSLHYPDGSLATITYATAGDSRFPKETLDVTGGGRNARMDNF 658          
BLAST of mRNA_P-wetherbeei_contig55561.1.1 vs. uniprot
Match: A0A0D1NKR7_BRAEL (Oxidoreductase n=2 Tax=Bradyrhizobium TaxID=374 RepID=A0A0D1NKR7_BRAEL)

HSP 1 Score: 180 bits (457), Expect = 5.750e-50
Identity = 90/173 (52.02%), Postives = 117/173 (67.63%), Query Frame = 1
Query:    1 HASLVAAALRAGKAVFVEKPLAISVKGLGEIIKAAEESGNDRLMAGFNRRFAPLLVQLRAAFGESNAPQFFQYRVNAGPSPQDSWYGDRARQGGRIVGEGCHFIDTASFWCGARPLAVMARHTGSDPDDMALMIDYDNGALASINYMTQGDPRYPKELIETSANGLSARLDNF 519
            HA L A ALR+GKAVFVEKPLAI    L ++++   ++GN+RLM GFNRRF+PLL  +RAAF  +  PQ  QYRV AGP  + SWY     +G R VGEG HFID  S+W G  P+ V A   G D D++   +D+ +G++AS++Y+T GDPR PKE +E SA+   AR DNF
Sbjct:  472 HADLAARALRSGKAVFVEKPLAIDTDSLDQLVQTIHDTGNNRLMVGFNRRFSPLLQDMRAAFAPAG-PQTLQYRVIAGPLEKSSWYLQAEIEGSRFVGEGGHFIDLLSWWLGVEPVRVSASAAGKDVDNLLATLDFADGSVASLSYLTGGDPRVPKEALEVSASTGFARFDNF 643          
BLAST of mRNA_P-wetherbeei_contig55561.1.1 vs. uniprot
Match: UPI0010098730 (Gfo/Idh/MocA family oxidoreductase n=1 Tax=Bradyrhizobium guangzhouense TaxID=1325095 RepID=UPI0010098730)

HSP 1 Score: 179 bits (455), Expect = 1.120e-49
Identity = 94/174 (54.02%), Postives = 116/174 (66.67%), Query Frame = 1
Query:    1 HASLVAAALRAGKAVFVEKPLAISVKGLGEIIKAAEESGNDRLMAGFNRRFAPLLVQLRAAFGESNAPQFFQYRVNAGPSPQDSWYGDRARQGGRIVGEGCHFIDTASFWCGARPLAVMARHTGSDPDDMALMIDYDNGALASINYMTQGDPRYPKELIETS-ANGLSARLDNF 519
            HA LV  ALRAGKAVFVEKPLA+ V  L  + +A  ESGNDRLM GFNRRF+PLL  L+ +F  +  PQ  QYRV AGP  + SWYG    +G R  GEG HFID  S+W  A P+ V A  TG D D++     + +G++A+++Y+T GDPR PKE IE S ANG +A  DNF
Sbjct:  473 HADLVVEALRAGKAVFVEKPLALDVSSLERVQQAIRESGNDRLMVGFNRRFSPLLQALKTSFAPAG-PQMLQYRVVAGPLEKTSWYGQSETEGSRFAGEGGHFIDVVSWWLAADPVRVSAAATGKDVDNLVATFSFADGSVATLSYLTGGDPRVPKEAIEISGANGFAA-FDNF 644          
BLAST of mRNA_P-wetherbeei_contig55561.1.1 vs. uniprot
Match: A0A0B2B615_9ACTN (Putative dehydrogenase n=1 Tax=Mumia flava TaxID=1348852 RepID=A0A0B2B615_9ACTN)

HSP 1 Score: 176 bits (446), Expect = 2.010e-48
Identity = 90/173 (52.02%), Postives = 113/173 (65.32%), Query Frame = 1
Query:    1 HASLVAAALRAGKAVFVEKPLAISVKGLGEIIKAAEESGNDRLMAGFNRRFAPLLVQLRAAFGESNAPQFFQYRVNAGPSPQDSWYGDRARQGGRIVGEGCHFIDTASFWCGARPLAVMARHTGSDPDDMALMIDYDNGALASINYMTQGDPRYPKELIETSANGLSARLDNF 519
            HA LV  AL AGKAVFVEKPLAI+   L  ++ A E +GNDRLM GFNRRFAP+L  LR  FG+   P   +Y VNAG     SWY +   +G R VGEG HF+DT S W G+ P+ V+AR T     D+ +M+ Y +G+L +I Y T GD R+PKE ++ S  G +ARLDNF
Sbjct:  484 HADLVCRALEAGKAVFVEKPLAITGDQLDRVVDAVERTGNDRLMVGFNRRFAPMLTDLRERFGDPGGPVSARYLVNAGALEAGSWYLNDDLEGSRFVGEGGHFVDTLSAWIGSAPVEVVARQTPGG-GDLHVMLTYADGSLGTITYATGGDSRFPKETLDVSGGGRNARLDNF 655          
BLAST of mRNA_P-wetherbeei_contig55561.1.1 vs. uniprot
Match: A4Z3A2_BRASO (Putative bi-domain oxidoreductase (N-ter: Zinc-binding dehydrogenase/C-ter:NAD-binding oxydoreductase) n=1 Tax=Bradyrhizobium sp. (strain ORS 278) TaxID=114615 RepID=A4Z3A2_BRASO)

HSP 1 Score: 176 bits (445), Expect = 2.900e-48
Identity = 86/173 (49.71%), Postives = 113/173 (65.32%), Query Frame = 1
Query:    1 HASLVAAALRAGKAVFVEKPLAISVKGLGEIIKAAEESGNDRLMAGFNRRFAPLLVQLRAAFGESNAPQFFQYRVNAGPSPQDSWYGDRARQGGRIVGEGCHFIDTASFWCGARPLAVMARHTGSDPDDMALMIDYDNGALASINYMTQGDPRYPKELIETSANGLSARLDNF 519
            HA L A ALRAGKAVFVEKPLA+    L  +I+   ++GNDRLM GFNRRF+PLL   R +F  S+ PQ   YRV AGP  + SWY     +G R  GEG HFID  S+W G+ P+ V A   GSD D++   + +D+G++A+++Y+T GD R PKEL+E S +    + DNF
Sbjct:  473 HADLAARALRAGKAVFVEKPLALDRTSLARVIETVHQTGNDRLMVGFNRRFSPLLSSARDSFS-SSGPQILHYRVVAGPLEKTSWYSQAETEGSRFAGEGGHFIDALSWWVGSEPVRVTASAAGSDIDNLVATLTFDDGSVATLSYLTGGDSRVPKELLEASGSAGFVKFDNF 644          
BLAST of mRNA_P-wetherbeei_contig55561.1.1 vs. uniprot
Match: A0A0Q9L1Q5_9MICO (Oxidoreductase n=1 Tax=Knoellia sp. Soil729 TaxID=1736394 RepID=A0A0Q9L1Q5_9MICO)

HSP 1 Score: 172 bits (436), Expect = 5.190e-47
Identity = 88/173 (50.87%), Postives = 115/173 (66.47%), Query Frame = 1
Query:    1 HASLVAAALRAGKAVFVEKPLAISVKGLGEIIKAAEESGNDRLMAGFNRRFAPLLVQLRAAFGESNAPQFFQYRVNAGPSPQDSWYGDRARQGGRIVGEGCHFIDTASFWCGARPLAVMARHTGSDPDDMALMIDYDNGALASINYMTQGDPRYPKELIETSANGLSARLDNF 519
            HA+ V  AL  GKAVFVEKPLA++   +  I++  E +GNDR+M GFNRRFAPLLV +R  FG S+AP   +Y VNAG     SWY D   +G R +GEG HFIDT S+W G  P+ V A  T SD  ++   + ++ G+LA+I Y T GDPR PKE+++ +  G +ARLDNF
Sbjct:  485 HAAFVCRALEHGKAVFVEKPLALTRAEVDGILEVVERTGNDRIMVGFNRRFAPLLVGMRHRFGSSSAPVSLRYLVNAGRMAAGSWYLDEQLEGSRWLGEGGHFIDTVSWWVGHHPVEVRAVQT-SDGANLQATLLFEEGSLATITYSTNGDPRVPKEVVDVAGGGRNARLDNF 656          
BLAST of mRNA_P-wetherbeei_contig55561.1.1 vs. uniprot
Match: A0A1E3EVS1_BRAEL (Oxidoreductase n=56 Tax=Bradyrhizobium TaxID=374 RepID=A0A1E3EVS1_BRAEL)

HSP 1 Score: 171 bits (434), Expect = 1.010e-46
Identity = 88/173 (50.87%), Postives = 110/173 (63.58%), Query Frame = 1
Query:    1 HASLVAAALRAGKAVFVEKPLAISVKGLGEIIKAAEESGNDRLMAGFNRRFAPLLVQLRAAFGESNAPQFFQYRVNAGPSPQDSWYGDRARQGGRIVGEGCHFIDTASFWCGARPLAVMARHTGSDPDDMALMIDYDNGALASINYMTQGDPRYPKELIETSANGLSARLDNF 519
            H  L   ALRAGKAVFVEKPLAI    L  + +   E+GN+RLM GFNRRF+PLL  +RA F  +  PQ  QYRV AGP  + SWY     +G R VGEG HFID   +W GA P+ V A   G D D++    D+ +G++AS++Y+T GDPR PKE +E SA+   A  DNF
Sbjct:  472 HTDLATQALRAGKAVFVEKPLAIDTNSLDRLEQVIRETGNNRLMVGFNRRFSPLLQGMRATFAPAG-PQTLQYRVMAGPLEKSSWYLQAESEGTRFVGEGGHFIDVLCWWLGAGPVRVFASTAGKDVDNLVATFDFADGSVASLSYLTGGDPRVPKEALEISASTGFAAFDNF 643          
BLAST of mRNA_P-wetherbeei_contig55561.1.1 vs. uniprot
Match: A0A7H1B3X4_9ACTN (Bi-domain-containing oxidoreductase n=1 Tax=Streptomyces xanthii TaxID=2768069 RepID=A0A7H1B3X4_9ACTN)

HSP 1 Score: 169 bits (429), Expect = 5.110e-46
Identity = 87/173 (50.29%), Postives = 115/173 (66.47%), Query Frame = 1
Query:    1 HASLVAAALRAGKAVFVEKPLAISVKGLGEIIKAAEESGNDRLMAGFNRRFAPLLVQLRAAFGESNAPQFFQYRVNAGPSPQDSWYGDRARQGGRIVGEGCHFIDTASFWCGARPLAVMARHTGSDPDDMALMIDYDNGALASINYMTQGDPRYPKELIETSANGLSARLDNF 519
            HA L   AL AGKAVFVEKPLA+S + L +++KA EESGNDRL  GFNRRFAPLL + R  FGE   P   +Y VNAG     SWY  +  +G R  GEG HF+DTAS+  GA P++V A    S  +D+ +++ Y +G+ A+I+Y+T G P +PKE ++  A+G   RLD+F
Sbjct:  478 HAELTRRALLAGKAVFVEKPLALSEEELADVLKAVEESGNDRLQVGFNRRFAPLLQEARQRFGERTGPASLRYLVNAGRLDHGSWYLRQGTEGSRFAGEGGHFVDTASWLLGADPVSVYAT-ASSGEEDLQVLLRYPDGSTATISYVTTGAPGFPKETLDLVADGKVLRLDDF 649          
BLAST of mRNA_P-wetherbeei_contig55561.1.1 vs. uniprot
Match: UPI001FF01984 (bi-domain-containing oxidoreductase n=1 Tax=Tardiphaga sp. vice154 TaxID=2592814 RepID=UPI001FF01984)

HSP 1 Score: 167 bits (424), Expect = 1.000e-45
Identity = 93/173 (53.76%), Postives = 110/173 (63.58%), Query Frame = 1
Query:    1 HASLVAAALRAGKAVFVEKPLAISVKGLGEIIKAAEESGNDRLMAGFNRRFAPLLVQLRAAFGESNAPQFFQYRVNAGPSPQDSWYGDRARQGGRIVGEGCHFIDTASFWCGARPLAVMARHTGSDPDDMALMIDYDNGALASINYMTQGDPRYPKELIETSANGLSARLDNF 519
            HA L A ALRAGKAVFVEKPLA+    L  I KA  ESGNDRLM GFNRRFAPLL +LR A+      Q  QYRV AG   + SWY     +G R  GEG HFIDT S+W GA P+ V+A    +D D++A    + +G+LA++NY+T GDPR  KE IE S     A  DNF
Sbjct:  372 HAVLAAQALRAGKAVFVEKPLALDPPSLQLIEKAVSESGNDRLMVGFNRRFAPLLQKLRLAW-TGRGLQTLQYRVLAGQLDKSSWYLQSETEGTRFAGEGGHFIDTLSWWIGADPVRVVAMADRNDADNLAATFSFADGSLATLNYLTGGDPRVAKEAIEISTASGFAAFDNF 543          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig55561.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6A7KNI3_9PROT7.280e-5352.60Zinc-binding dehydrogenase n=1 Tax=Alphaproteobact... [more]
A0A2G6HC06_9ACTO5.810e-5154.34Oxidoreductase n=1 Tax=Actinomycetales bacterium T... [more]
A0A0D1NKR7_BRAEL5.750e-5052.02Oxidoreductase n=2 Tax=Bradyrhizobium TaxID=374 Re... [more]
UPI00100987301.120e-4954.02Gfo/Idh/MocA family oxidoreductase n=1 Tax=Bradyrh... [more]
A0A0B2B615_9ACTN2.010e-4852.02Putative dehydrogenase n=1 Tax=Mumia flava TaxID=1... [more]
A4Z3A2_BRASO2.900e-4849.71Putative bi-domain oxidoreductase (N-ter: Zinc-bin... [more]
A0A0Q9L1Q5_9MICO5.190e-4750.87Oxidoreductase n=1 Tax=Knoellia sp. Soil729 TaxID=... [more]
A0A1E3EVS1_BRAEL1.010e-4650.87Oxidoreductase n=56 Tax=Bradyrhizobium TaxID=374 R... [more]
A0A7H1B3X4_9ACTN5.110e-4650.29Bi-domain-containing oxidoreductase n=1 Tax=Strept... [more]
UPI001FF019841.000e-4553.76bi-domain-containing oxidoreductase n=1 Tax=Tardip... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig55561contigP-wetherbeei_contig55561:3..521 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog1297865.APJD01000005_gene3779
PFAMsADH_zinc_N,GFO_IDH_MocA
Model size519
Max annot lvl28211|Alphaproteobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue9.43e-51
EggNOG OGsCOG0673@1|root,COG1063@1|root,COG0673@2|Bacteria,COG1063@2|Bacteria,1PS9M@1224|Proteobacteria,2V4GN@28211|Alphaproteobacteria,3JWNE@41294|Bradyrhizobiaceae
Descriptioninositol 2-dehydrogenase activity
Cds size519
COG categoryE
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186827.3996756-CDS-P-wetherbeei_contig55561:2..5211683186827.3996756-CDS-P-wetherbeei_contig55561:2..521Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig55561 3..521 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig55561.1.1prot_P-wetherbeei_contig55561.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig55561 3..521 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig55561.1.1

>prot_P-wetherbeei_contig55561.1.1 ID=prot_P-wetherbeei_contig55561.1.1|Name=mRNA_P-wetherbeei_contig55561.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=173bp
HASLVAAALRAGKAVFVEKPLAISVKGLGEIIKAAEESGNDRLMAGFNRR
FAPLLVQLRAAFGESNAPQFFQYRVNAGPSPQDSWYGDRARQGGRIVGEG
CHFIDTASFWCGARPLAVMARHTGSDPDDMALMIDYDNGALASINYMTQG
DPRYPKELIETSANGLSARLDNF
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mRNA from alignment at P-wetherbeei_contig55561:3..521+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig55561.1.1 ID=mRNA_P-wetherbeei_contig55561.1.1|Name=mRNA_P-wetherbeei_contig55561.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=519bp|location=Sequence derived from alignment at P-wetherbeei_contig55561:3..521+ (Phaeothamnion wetherbeei SAG_119_79)
CATGCATCGCTCGTGGCGGCGGCTTTACGCGCGGGCAAAGCGGTGTTCGT GGAAAAGCCGCTGGCGATCTCTGTAAAAGGGTTGGGCGAGATCATCAAAG CCGCAGAGGAAAGCGGCAATGACCGACTGATGGCCGGCTTCAATCGCCGC TTCGCGCCGCTGCTGGTGCAGTTGCGTGCGGCCTTCGGCGAAAGCAACGC GCCGCAATTTTTTCAATACCGCGTCAATGCTGGGCCGTCGCCGCAAGATA GCTGGTATGGTGATCGAGCGCGCCAGGGCGGGCGCATCGTTGGCGAGGGT TGTCATTTCATCGACACCGCATCTTTCTGGTGCGGCGCCCGTCCGCTTGC GGTCATGGCGCGCCACACCGGAAGCGATCCCGACGACATGGCGTTGATGA TTGACTACGATAATGGCGCGCTCGCCTCGATCAACTATATGACGCAAGGC GATCCGCGCTATCCAAAGGAATTGATAGAAACATCCGCCAACGGGCTGTC AGCGCGCCTCGATAATTTT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig55561:3..521+

>mRNA_P-wetherbeei_contig55561.1.1 ID=mRNA_P-wetherbeei_contig55561.1.1|Name=mRNA_P-wetherbeei_contig55561.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=519bp|location=Sequence derived from alignment at P-wetherbeei_contig55561:3..521+ (Phaeothamnion wetherbeei SAG_119_79)
CATGCATCGCTCGTGGCGGCGGCTTTACGCGCGGGCAAAGCGGTGTTCGT
GGAAAAGCCGCTGGCGATCTCTGTAAAAGGGTTGGGCGAGATCATCAAAG
CCGCAGAGGAAAGCGGCAATGACCGACTGATGGCCGGCTTCAATCGCCGC
TTCGCGCCGCTGCTGGTGCAGTTGCGTGCGGCCTTCGGCGAAAGCAACGC
GCCGCAATTTTTTCAATACCGCGTCAATGCTGGGCCGTCGCCGCAAGATA
GCTGGTATGGTGATCGAGCGCGCCAGGGCGGGCGCATCGTTGGCGAGGGT
TGTCATTTCATCGACACCGCATCTTTCTGGTGCGGCGCCCGTCCGCTTGC
GGTCATGGCGCGCCACACCGGAAGCGATCCCGACGACATGGCGTTGATGA
TTGACTACGATAATGGCGCGCTCGCCTCGATCAACTATATGACGCAAGGC
GATCCGCGCTATCCAAAGGAATTGATAGAAACATCCGCCAACGGGCTGTC
AGCGCGCCTCGATAATTTT
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