mRNA_P-wetherbeei_contig5556.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig5556.2.1
Unique NamemRNA_P-wetherbeei_contig5556.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig5556.2.1 vs. uniprot
Match: A0A5D6XTB3_9STRA (ELMO domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XTB3_9STRA)

HSP 1 Score: 97.8 bits (242), Expect = 4.840e-22
Identity = 46/76 (60.53%), Postives = 56/76 (73.68%), Query Frame = 1 
Query:    1 CLGPINVVNRLILRTSAMKAEAYRSDDDAHEALLERLWSDLLPGRRRSA-RITREWGDVGFQGQDPATDFRGMGLL 225
            CL   N VNR+  RT  ++ EAY S DD HEALLE+LW +L P  RRS  RIT+EWG++GFQG DP +DFRGMG+L
Sbjct:  589 CLHRCNFVNRVYARTHQLRDEAYSSVDDRHEALLEQLWDNLKPNVRRSGGRITKEWGEIGFQGTDPKSDFRGMGIL 664
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BLAST of mRNA_P-wetherbeei_contig5556.2.1 vs. uniprot
Match: D3BK56_POLPP (Engulfment and cell motility ELM family protein n=1 Tax=Polysphondylium pallidum (strain ATCC 26659 / Pp 5 / PN500) TaxID=670386 RepID=D3BK56_POLPP)

HSP 1 Score: 92.4 bits (228), Expect = 6.490e-21
Identity = 39/75 (52.00%), Postives = 57/75 (76.00%), Query Frame = 1 
Query:    4 LGPINVVNRLILRTSAMKAEAYRSDDDAHEALLERLWSDLLPGRRRSARITREWGDVGFQGQDPATDFRGMGLLG 228
            L P++ +  L  + + ++ +AY S+++ HE  L++LW+ + P +RRSARIT EWG +GFQG+DPATDFRGMGLLG
Sbjct:   97 LEPLSALQSLKAQITLLRDQAYDSENEIHEEKLDQLWNSIFPNKRRSARITSEWGHMGFQGKDPATDFRGMGLLG 171
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BLAST of mRNA_P-wetherbeei_contig5556.2.1 vs. uniprot
Match: A0A024UI78_9STRA (ELMO domain-containing protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UI78_9STRA)

HSP 1 Score: 89.4 bits (220), Expect = 2.850e-20
Identity = 43/76 (56.58%), Postives = 52/76 (68.42%), Query Frame = 1 
Query:    1 CLGPINVVNRLILRTSAMKAEAYRSDDDAHEALLERLWSDLLPG-RRRSARITREWGDVGFQGQDPATDFRGMGLL 225
            C      VN +  +  A+K EAY S +D HEALLE+LWS+L P  RR   R T+EWG++GFQGQDP TDFR MGLL
Sbjct:  122 CFIRFRQVNEVYSQALALKDEAYDSKNDEHEALLEQLWSNLKPDVRRTGGRYTKEWGEIGFQGQDPMTDFRSMGLL 197
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BLAST of mRNA_P-wetherbeei_contig5556.2.1 vs. uniprot
Match: W4FGS1_9STRA (ELMO domain-containing protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=W4FGS1_9STRA)

HSP 1 Score: 89.0 bits (219), Expect = 5.760e-20
Identity = 43/76 (56.58%), Postives = 53/76 (69.74%), Query Frame = 1 
Query:    1 CLGPINVVNRLILRTSAMKAEAYRSDDDAHEALLERLWSDLLPGRRRSA-RITREWGDVGFQGQDPATDFRGMGLL 225
            C      VN +  +  A+K EAY S +D HEALLE+LW++L P  RRS  R T+EWG++GFQGQDP TDFR MGLL
Sbjct:  124 CFIRFREVNEVYSQALALKDEAYDSTNDQHEALLEQLWTNLKPDVRRSGGRYTKEWGEIGFQGQDPMTDFRSMGLL 199
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BLAST of mRNA_P-wetherbeei_contig5556.2.1 vs. uniprot
Match: A0A0P1ACK8_PLAHL (Uncharacterized protein n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1ACK8_PLAHL)

HSP 1 Score: 91.3 bits (225), Expect = 9.600e-20
Identity = 43/76 (56.58%), Postives = 54/76 (71.05%), Query Frame = 1 
Query:    1 CLGPINVVNRLILRTSAMKAEAYRSDDDAHEALLERLWSDLLPG-RRRSARITREWGDVGFQGQDPATDFRGMGLL 225
            CL   N VNR+  +  A+K EAY S +  HE LLE+LWS+L P  RR   RIT+EWG++GFQG DP +DFRGMG+L
Sbjct:  111 CLQRCNFVNRIYDQVYALKNEAYSSSNSEHEELLEQLWSNLKPDVRRLGGRITKEWGEIGFQGTDPMSDFRGMGIL 186
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BLAST of mRNA_P-wetherbeei_contig5556.2.1 vs. uniprot
Match: A0A0S7LUQ1_9TELE (ELMD2 n=2 Tax=Poeciliopsis prolifica TaxID=188132 RepID=A0A0S7LUQ1_9TELE)

HSP 1 Score: 89.4 bits (220), Expect = 9.960e-20
Identity = 41/76 (53.95%), Postives = 52/76 (68.42%), Query Frame = 1 
Query:    1 CLGPINVVNRLILRTSAMKAEAYRSDDDAHEALLERLWSDLLPGRRRSARITREWGDVGFQGQDPATDFRGMGLLG 228
            CL  I   NRL      ++ EA+ SD+  HEA+L +LW  L+P  +  +RITR+WGD+GFQG DP TDFRGMGLLG
Sbjct:   99 CLLQITGYNRLYFCVEHLRKEAFDSDNPKHEAMLLKLWDLLMPTVKLESRITRQWGDIGFQGDDPKTDFRGMGLLG 174
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BLAST of mRNA_P-wetherbeei_contig5556.2.1 vs. uniprot
Match: A0A024UK55_9STRA (ELMO domain-containing protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UK55_9STRA)

HSP 1 Score: 89.4 bits (220), Expect = 1.190e-19
Identity = 43/76 (56.58%), Postives = 52/76 (68.42%), Query Frame = 1 
Query:    1 CLGPINVVNRLILRTSAMKAEAYRSDDDAHEALLERLWSDLLPG-RRRSARITREWGDVGFQGQDPATDFRGMGLL 225
            C      VN +  +  A+K EAY S +D HEALLE+LWS+L P  RR   R T+EWG++GFQGQDP TDFR MGLL
Sbjct:  122 CFIRFRQVNEVYSQALALKDEAYDSKNDEHEALLEQLWSNLKPDVRRTGGRYTKEWGEIGFQGQDPMTDFRSMGLL 197
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BLAST of mRNA_P-wetherbeei_contig5556.2.1 vs. uniprot
Match: A0A151ZHW9_9MYCE (ELMO domain-containing protein n=1 Tax=Tieghemostelium lacteum TaxID=361077 RepID=A0A151ZHW9_9MYCE)

HSP 1 Score: 89.0 bits (219), Expect = 1.260e-19
Identity = 39/75 (52.00%), Postives = 53/75 (70.67%), Query Frame = 1 
Query:    4 LGPINVVNRLILRTSAMKAEAYRSDDDAHEALLERLWSDLLPGRRRSARITREWGDVGFQGQDPATDFRGMGLLG 228
            L P++ +  L  +   +  +AY +D+  HE  LE +WS L PG RR AR+T EWGD+GFQG+DP+TDFRGMG+LG
Sbjct:   98 LEPLSKIQILKNQLKTLYNQAYCNDNATHEEKLEEIWSSLRPGIRRKARLTSEWGDIGFQGKDPSTDFRGMGILG 172
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BLAST of mRNA_P-wetherbeei_contig5556.2.1 vs. uniprot
Match: A0A8J5J2E0_9STRA (Uncharacterized protein n=1 Tax=Phytophthora aleatoria TaxID=2496075 RepID=A0A8J5J2E0_9STRA)

HSP 1 Score: 90.1 bits (222), Expect = 1.630e-19
Identity = 42/76 (55.26%), Postives = 52/76 (68.42%), Query Frame = 1 
Query:    1 CLGPINVVNRLILRTSAMKAEAYRSDDDAHEALLERLWSDLLPG-RRRSARITREWGDVGFQGQDPATDFRGMGLL 225
            CL   N VN++  R  A+K EAY S    HE LLE+LW++L P  RR   RIT+EWG++GFQG DP +DFRGMGL 
Sbjct:  111 CLQRCNFVNKVYARVYALKNEAYSSSKPEHEELLEQLWTNLKPDVRREGGRITKEWGEIGFQGTDPMSDFRGMGLF 186
[Close]
BLAST of mRNA_P-wetherbeei_contig5556.2.1 vs. uniprot
Match: W4FEZ0_9STRA (ELMO domain-containing protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4FEZ0_9STRA)

HSP 1 Score: 89.0 bits (219), Expect = 1.700e-19
Identity = 43/76 (56.58%), Postives = 53/76 (69.74%), Query Frame = 1 
Query:    1 CLGPINVVNRLILRTSAMKAEAYRSDDDAHEALLERLWSDLLPGRRRSA-RITREWGDVGFQGQDPATDFRGMGLL 225
            C      VN +  +  A+K EAY S +D HEALLE+LW++L P  RRS  R T+EWG++GFQGQDP TDFR MGLL
Sbjct:  124 CFIRFREVNEVYSQALALKDEAYDSTNDQHEALLEQLWTNLKPDVRRSGGRYTKEWGEIGFQGQDPMTDFRSMGLL 199
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5556.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A5D6XTB3_9STRA4.840e-2260.53ELMO domain-containing protein n=1 Tax=Pythium bra... [more]
D3BK56_POLPP6.490e-2152.00Engulfment and cell motility ELM family protein n=... [more]
A0A024UI78_9STRA2.850e-2056.58ELMO domain-containing protein n=1 Tax=Aphanomyces... [more]
W4FGS1_9STRA5.760e-2056.58ELMO domain-containing protein n=2 Tax=Aphanomyces... [more]
A0A0P1ACK8_PLAHL9.600e-2056.58Uncharacterized protein n=1 Tax=Plasmopara halsted... [more]
A0A0S7LUQ1_9TELE9.960e-2053.95ELMD2 n=2 Tax=Poeciliopsis prolifica TaxID=188132 ... [more]
A0A024UK55_9STRA1.190e-1956.58ELMO domain-containing protein n=1 Tax=Aphanomyces... [more]
A0A151ZHW9_9MYCE1.260e-1952.00ELMO domain-containing protein n=1 Tax=Tieghemoste... [more]
A0A8J5J2E0_9STRA1.630e-1955.26Uncharacterized protein n=1 Tax=Phytophthora aleat... [more]
W4FEZ0_9STRA1.700e-1956.58ELMO domain-containing protein n=1 Tax=Aphanomyces... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig5556contigP-wetherbeei_contig5556:1748..2465 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog42099.EPrPV00000013964
PFAMsELMO_CED12,zf-C2H2_jaz
Model size230
Max annot lvl121069|Pythiales
Hectar predicted targeting categoryother localisation
Exons2
Evalue4.44e-21
EggNOG OGsCOG5112@1|root,KOG2998@1|root,KOG2998@2759|Eukaryota,KOG3408@2759|Eukaryota,1MDMB@121069|Pythiales
DescriptionSource PGD
Cds size228
COG categoryA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186827.3251455-CDS-P-wetherbeei_contig5556:1749..19141683186827.3251455-CDS-P-wetherbeei_contig5556:1749..1914Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5556 1750..1914 -
1683186827.3343308-CDS-P-wetherbeei_contig5556:2402..24651683186827.3343308-CDS-P-wetherbeei_contig5556:2402..2465Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5556 2403..2465 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig5556.2.1prot_P-wetherbeei_contig5556.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig5556 1750..2465 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig5556.2.1

>prot_P-wetherbeei_contig5556.2.1 ID=prot_P-wetherbeei_contig5556.2.1|Name=mRNA_P-wetherbeei_contig5556.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=76bp
CLGPINVVNRLILRTSAMKAEAYRSDDDAHEALLERLWSDLLPGRRRSAR
ITREWGDVGFQGQDPATDFRGMGLLG
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mRNA from alignment at P-wetherbeei_contig5556:1748..2465-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig5556.2.1 ID=mRNA_P-wetherbeei_contig5556.2.1|Name=mRNA_P-wetherbeei_contig5556.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=718bp|location=Sequence derived from alignment at P-wetherbeei_contig5556:1748..2465- (Phaeothamnion wetherbeei SAG_119_79)
TGCCTCGGACCAATTAACGTCGTCAATCGTCTCATCTTAAGAACGTCAGC
AATGAAAGCCGAGGTAAGCAAACCGCCTTTCCCAACGGTTGCAATGGATG
TGTCGCGCTCGGGCTGCAGGTGATTACAAAGCTTGCATTCTCCCTTACTT
CCAAAATTGTCCAGTCGGGAAGTTCTACATCCCATTCAAGAAATCTCGAT
CTCTTTGGTGACGTGTTGGTGACGTGCAGCCTAGACTTTTTATAGAAACG
ATGTGGTCGACCAGGTATTTGCACATGAATATCTGCACAACTTAAATTCC
GAACCATGTGTCGGCAATGAAACGCTTTCGTAGGCGCAATTCTGAAAAGT
TCCGAAAGGGCTGACAAGCTCGCATCGAGAGCTTTCGAAAAAGCCCACAA
ACTATGGCAGATGTCAATTGTGGAATTACGGAAACTCTAACAGAACTTTT
CGATCATCTCTCTTCCCTCGGCTCGGTGTCCTTTCTACTTTCTGCGCCTT
GTCGGACGATTGCAAGCTACTATGGCGGTCGCTGACGGCGGCGTGCGGCA
GGCGTACCGGAGCGACGACGATGCCCACGAAGCGCTGCTGGAACGGCTGT
GGTCCGACCTGCTGCCCGGGCGGCGGCGCAGCGCGAGGATCACCCGGGAG
TGGGGCGACGTCGGCTTCCAGGGGCAGGATCCGGCGACGGACTTCCGGGG
AATGGGCTTGCTCGGCGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig5556:1748..2465-

>mRNA_P-wetherbeei_contig5556.2.1 ID=mRNA_P-wetherbeei_contig5556.2.1|Name=mRNA_P-wetherbeei_contig5556.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=228bp|location=Sequence derived from alignment at P-wetherbeei_contig5556:1748..2465- (Phaeothamnion wetherbeei SAG_119_79)
TGCCTCGGACCAATTAACGTCGTCAATCGTCTCATCTTAAGAACGTCAGC
AATGAAAGCCGAGGCGTACCGGAGCGACGACGATGCCCACGAAGCGCTGC
TGGAACGGCTGTGGTCCGACCTGCTGCCCGGGCGGCGGCGCAGCGCGAGG
ATCACCCGGGAGTGGGGCGACGTCGGCTTCCAGGGGCAGGATCCGGCGAC
GGACTTCCGGGGAATGGGCTTGCTCGGC
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