mRNA_P-wetherbeei_contig5556.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig5556.1.1
Unique NamemRNA_P-wetherbeei_contig5556.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig5556.1.1 vs. uniprot
Match: K3X4G9_GLOUD (ELMO domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X4G9_GLOUD)

HSP 1 Score: 72.0 bits (175), Expect = 2.330e-13
Identity = 32/56 (57.14%), Postives = 41/56 (73.21%), Query Frame = 1
Query:    1 LVQLAYFAERRPEEARAALAESGHPVRFYPFAVAGINLTQFVCELLGDRALDFYLY 168
            L QL +F    P EA+AALAES HP R+YPF+V GIN+T F+ EL+ +R +DF LY
Sbjct:  188 LYQLLHFTGNYPVEAQAALAESNHPTRWYPFSVTGINITSFIIELINERLVDFKLY 243          
BLAST of mRNA_P-wetherbeei_contig5556.1.1 vs. uniprot
Match: A0A2D4BM04_PYTIN (Cysteine-rich PDZ-binding protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BM04_PYTIN)

HSP 1 Score: 70.5 bits (171), Expect = 8.340e-13
Identity = 31/56 (55.36%), Postives = 41/56 (73.21%), Query Frame = 1
Query:    1 LVQLAYFAERRPEEARAALAESGHPVRFYPFAVAGINLTQFVCELLGDRALDFYLY 168
            LVQL YF  + P EA+AAL ES HP R+YPF+V GIN+T F+ +L+ +R LD  +Y
Sbjct:  177 LVQLLYFTSKYPVEAQAALVESNHPTRWYPFSVTGINVTGFIVDLIRERLLDVKIY 232          
BLAST of mRNA_P-wetherbeei_contig5556.1.1 vs. uniprot
Match: A0A5D6XTB3_9STRA (ELMO domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XTB3_9STRA)

HSP 1 Score: 68.6 bits (166), Expect = 4.020e-12
Identity = 31/56 (55.36%), Postives = 41/56 (73.21%), Query Frame = 1
Query:    1 LVQLAYFAERRPEEARAALAESGHPVRFYPFAVAGINLTQFVCELLGDRALDFYLY 168
            L QL +F+ + P EA AALAES HP R+YPF+V GIN+T F+ EL+ +R +D  LY
Sbjct:  666 LQQLVHFSVKYPVEAHAALAESNHPTRWYPFSVTGINITGFMIELINERLVDVKLY 721          
BLAST of mRNA_P-wetherbeei_contig5556.1.1 vs. uniprot
Match: T0QIL4_SAPDV (ELMO domain-containing protein n=3 Tax=Saprolegnia TaxID=4769 RepID=T0QIL4_SAPDV)

HSP 1 Score: 64.7 bits (156), Expect = 6.720e-11
Identity = 30/58 (51.72%), Postives = 39/58 (67.24%), Query Frame = 1
Query:    1 LVQLAYFAERRPEEARA--ALAESGHPVRFYPFAVAGINLTQFVCELLGDRALDFYLY 168
            L QL Y+  + PEEAR+  AL  S HP ++YPFA+ GIN+T F+ EL+ DR LD   Y
Sbjct:  187 LHQLLYYTSKYPEEARSLSALVHSNHPTQWYPFAITGINITNFLVELINDRLLDARFY 244          
BLAST of mRNA_P-wetherbeei_contig5556.1.1 vs. uniprot
Match: A0A1W0A2I8_9STRA (ELMO domain-containing protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A2I8_9STRA)

HSP 1 Score: 64.3 bits (155), Expect = 9.530e-11
Identity = 30/56 (53.57%), Postives = 37/56 (66.07%), Query Frame = 1
Query:    1 LVQLAYFAERRPEEARAALAESGHPVRFYPFAVAGINLTQFVCELLGDRALDFYLY 168
            L QL YF +   EEA+ AL  S HP  +YPFAV GIN+T F+ EL+ DR LD  +Y
Sbjct:  194 LHQLNYFTKNYGEEAKRALVHSCHPTSWYPFAVTGINITNFIAELIKDRLLDSRMY 249          
BLAST of mRNA_P-wetherbeei_contig5556.1.1 vs. uniprot
Match: A0A1V9Y6B6_9STRA (ELMO domain-containing protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9Y6B6_9STRA)

HSP 1 Score: 63.5 bits (153), Expect = 1.760e-10
Identity = 29/56 (51.79%), Postives = 38/56 (67.86%), Query Frame = 1
Query:    1 LVQLAYFAERRPEEARAALAESGHPVRFYPFAVAGINLTQFVCELLGDRALDFYLY 168
            L QL Y+ +   EEAR AL  S HP ++YPFAV GIN+T F+ EL+ DR LD  ++
Sbjct:  188 LHQLNYYTKNYAEEARRALVHSNHPTQWYPFAVTGINITNFLYELIQDRLLDSRMF 243          
BLAST of mRNA_P-wetherbeei_contig5556.1.1 vs. uniprot
Match: A0A8H7PDR2_MORIS (ELMO domain-containing protein n=1 Tax=Mortierella isabellina TaxID=91625 RepID=A0A8H7PDR2_MORIS)

HSP 1 Score: 60.8 bits (146), Expect = 2.020e-9
Identity = 28/56 (50.00%), Postives = 38/56 (67.86%), Query Frame = 1
Query:    1 LVQLAYFAERRPEEARAALAESGHPVRFYPFAVAGINLTQFVCELLGDRALDFYLY 168
            L  L Y+A+  P+ AR AL  S HPV +YPFAV GIN+TQ+  ++L  R L +YL+
Sbjct:  251 LDDLVYYAQVHPKSARRALQCSLHPVSWYPFAVVGINITQYAVQILLTRKLQYYLF 306          
BLAST of mRNA_P-wetherbeei_contig5556.1.1 vs. uniprot
Match: A0A8H7UCZ6_9FUNG (ELMO domain-containing protein n=1 Tax=Umbelopsis vinacea TaxID=44442 RepID=A0A8H7UCZ6_9FUNG)

HSP 1 Score: 60.5 bits (145), Expect = 2.760e-9
Identity = 27/56 (48.21%), Postives = 37/56 (66.07%), Query Frame = 1
Query:    1 LVQLAYFAERRPEEARAALAESGHPVRFYPFAVAGINLTQFVCELLGDRALDFYLY 168
            L  L Y+A+  PE AR  L  S HPV +YPFA+ GIN+TQ+  ++L  R L +YL+
Sbjct:  247 LDDLLYYAKTHPESARRTLQCSLHPVSWYPFAIVGINITQYAVQILLTRKLQYYLF 302          
BLAST of mRNA_P-wetherbeei_contig5556.1.1 vs. uniprot
Match: A0A077WPX2_9FUNG (ELMO domain-containing protein n=2 Tax=Lichtheimia TaxID=688353 RepID=A0A077WPX2_9FUNG)

HSP 1 Score: 60.1 bits (144), Expect = 3.690e-9
Identity = 26/56 (46.43%), Postives = 34/56 (60.71%), Query Frame = 1
Query:    1 LVQLAYFAERRPEEARAALAESGHPVRFYPFAVAGINLTQFVCELLGDRALDFYLY 168
            L  L Y+A   PE A+     S HPV +YPFA+ GIN+TQF  + L  R L +YL+
Sbjct:  225 LDDLVYYASTHPESAQHTFLSSRHPVSWYPFAIVGINITQFAVQTLRTRQLQYYLF 280          
BLAST of mRNA_P-wetherbeei_contig5556.1.1 vs. uniprot
Match: A0A8H7BLU6_9FUNG (ELMO domain-containing protein 2 n=1 Tax=Apophysomyces ossiformis TaxID=679940 RepID=A0A8H7BLU6_9FUNG)

HSP 1 Score: 54.3 bits (129), Expect = 4.160e-7
Identity = 23/56 (41.07%), Postives = 33/56 (58.93%), Query Frame = 1
Query:    1 LVQLAYFAERRPEEARAALAESGHPVRFYPFAVAGINLTQFVCELLGDRALDFYLY 168
            L  L Y+A+  P  A   L  S HPV +YP+A+ GIN+TQ+  + L  R L  +L+
Sbjct:  212 LDDLLYYAQTHPSSALQTLTSSHHPVSWYPYAIVGINITQYAVQALRTRQLQHFLF 267          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5556.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 12
Match NameE-valueIdentityDescription
K3X4G9_GLOUD2.330e-1357.14ELMO domain-containing protein n=1 Tax=Globisporan... [more]
A0A2D4BM04_PYTIN8.340e-1355.36Cysteine-rich PDZ-binding protein n=1 Tax=Pythium ... [more]
A0A5D6XTB3_9STRA4.020e-1255.36ELMO domain-containing protein n=1 Tax=Pythium bra... [more]
T0QIL4_SAPDV6.720e-1151.72ELMO domain-containing protein n=3 Tax=Saprolegnia... [more]
A0A1W0A2I8_9STRA9.530e-1153.57ELMO domain-containing protein n=1 Tax=Thraustothe... [more]
A0A1V9Y6B6_9STRA1.760e-1051.79ELMO domain-containing protein n=1 Tax=Achlya hypo... [more]
A0A8H7PDR2_MORIS2.020e-950.00ELMO domain-containing protein n=1 Tax=Mortierella... [more]
A0A8H7UCZ6_9FUNG2.760e-948.21ELMO domain-containing protein n=1 Tax=Umbelopsis ... [more]
A0A077WPX2_9FUNG3.690e-946.43ELMO domain-containing protein n=2 Tax=Lichtheimia... [more]
A0A8H7BLU6_9FUNG4.160e-741.07ELMO domain-containing protein 2 n=1 Tax=Apophysom... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig5556contigP-wetherbeei_contig5556:1154..1539 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog42099.EPrPV00000013964
PFAMsELMO_CED12,zf-C2H2_jaz
Model size170
Max annot lvl121069|Pythiales
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Evalue1.49e-14
EggNOG OGsCOG5112@1|root,KOG2998@1|root,KOG2998@2759|Eukaryota,KOG3408@2759|Eukaryota,1MDMB@121069|Pythiales
DescriptionSource PGD
Cds size168
COG categoryA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186827.2931578-CDS-P-wetherbeei_contig5556:1153..12461683186827.2931578-CDS-P-wetherbeei_contig5556:1153..1246Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5556 1154..1246 -
1683186827.3026474-CDS-P-wetherbeei_contig5556:1464..15391683186827.3026474-CDS-P-wetherbeei_contig5556:1464..1539Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5556 1465..1539 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig5556.1.1prot_P-wetherbeei_contig5556.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig5556 1154..1539 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig5556.1.1

>prot_P-wetherbeei_contig5556.1.1 ID=prot_P-wetherbeei_contig5556.1.1|Name=mRNA_P-wetherbeei_contig5556.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=56bp
LVQLAYFAERRPEEARAALAESGHPVRFYPFAVAGINLTQFVCELLGDRA
LDFYLY
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mRNA from alignment at P-wetherbeei_contig5556:1154..1539-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig5556.1.1 ID=mRNA_P-wetherbeei_contig5556.1.1|Name=mRNA_P-wetherbeei_contig5556.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=386bp|location=Sequence derived from alignment at P-wetherbeei_contig5556:1154..1539- (Phaeothamnion wetherbeei SAG_119_79)
TTGGTGCAGCTGGCCTATTTCGCGGAGCGGCGGCCCGAAGAGGCGCGAGC GGCCTTGGCGGAATCAGGCCACCCGGTGAGCCATTAACACGCTGGATGTG TTTCAAATCGCACATCTCGCCATGCTATCTGGACCTGATGCGCCACGATG CCTCAGAGATAGTTTGTTTGGACAGGCACGCCGCAAGACTGCCAATTATG GCTAGATCCTGTCTATCGCGCGACGGCGGTGGCTTCTTTGTCTTGCGTGA CCGCGTCGCGTCGTCCGTTTCGCTGTTTCGTTTCTTGCTGCAGGTGCGCT TCTACCCATTTGCTGTGGCGGGCATCAATCTGACGCAGTTCGTATGCGAG CTTCTCGGCGACCGCGCGCTCGACTTTTACCTTTAC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig5556:1154..1539-

>mRNA_P-wetherbeei_contig5556.1.1 ID=mRNA_P-wetherbeei_contig5556.1.1|Name=mRNA_P-wetherbeei_contig5556.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=168bp|location=Sequence derived from alignment at P-wetherbeei_contig5556:1154..1539- (Phaeothamnion wetherbeei SAG_119_79)
TTGGTGCAGCTGGCCTATTTCGCGGAGCGGCGGCCCGAAGAGGCGCGAGC
GGCCTTGGCGGAATCAGGCCACCCGGTGCGCTTCTACCCATTTGCTGTGG
CGGGCATCAATCTGACGCAGTTCGTATGCGAGCTTCTCGGCGACCGCGCG
CTCGACTTTTACCTTTAC
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