mRNA_P-wetherbeei_contig5553.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig5553.3.1
Unique NamemRNA_P-wetherbeei_contig5553.3.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig5553.3.1 vs. uniprot
Match: A0A6H5KR13_9PHAE (Peroxin/Ferlin domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KR13_9PHAE)

HSP 1 Score: 70.9 bits (172), Expect = 1.740e-10
Identity = 42/91 (46.15%), Postives = 51/91 (56.04%), Query Frame = 1 
Query:  823 PARRKFLGAVVEVYENEAWGWGLGALGSMGRPTGGAAAALAGKARPPRWSYRDGSAALAPGEVLCPDDWEWASEWHFDRTGCRDRDGWEYA 1095
            P  +K L   VEVYE E+ G  LG      R TG              W+Y+DGS+AL P +VLCPD+W WASEW  D +G RD  GWEY+
Sbjct:  106 PPPKKLLLHKVEVYEVESGG--LGRRWRQSR-TG--------------WTYKDGSSALPPRQVLCPDEWTWASEWKIDGSGGRDEAGWEYS 179
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5553.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KR13_9PHAE1.740e-1046.15Peroxin/Ferlin domain-containing protein n=2 Tax=E... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig5553contigP-wetherbeei_contig5553:1350..2999 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size1651
Hectar predicted targeting categorysignal anchor
Exons1
Cds size1458
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186826.980527-CDS-P-wetherbeei_contig5553:1349..28071683186826.980527-CDS-P-wetherbeei_contig5553:1349..2807Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5553 1350..2807 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186826.9912622-UTR-P-wetherbeei_contig5553:2807..29991683186826.9912622-UTR-P-wetherbeei_contig5553:2807..2999Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig5553 2808..2999 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig5553.3.1prot_P-wetherbeei_contig5553.3.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig5553 1350..2807 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig5553.3.1

>prot_P-wetherbeei_contig5553.3.1 ID=prot_P-wetherbeei_contig5553.3.1|Name=mRNA_P-wetherbeei_contig5553.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=486bp
MEGLFSREKKGMSVRAAPGGRAVTEMRRRRRRSSLNLCAGTTAVVCACVA
VRQHLAASGEEGRPSSGNGGSANGQCGKGIGGATRWLAAAQDLSRGNERS
PGLAYTQRLGAGSAAHGHRHSLSPRTRGADFVEDGAPMPTFADIWLEDDI
DDGRGDVSEAGAASTDPATSSLAEDAILPIAGAANGTTQISAALAPAAAD
PPVPLPAPAPPARRKFLGAVVEVYENEAWGWGLGALGSMGRPTGGAAAAL
AGKARPPRWSYRDGSAALAPGEVLCPDDWEWASEWHFDRTGCRDRDGWEY
ASGPGEFGGGGGGDGSDSRWNQRGRKGRAWADGWRRRRWVRAMRPIAGSL
TAAAAAVATNAAAEAIAEEEDAAMATAAAAAAAAAAKVVVRPEPLAEAVT
AAAAGAAVMTVTGAPALHAHAYVLDPDEGFALGLGLGLSSTSGSVTPAAG
AATANTGWRDDYPSYMGRDLLPVPPAAIAVAKATAP
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mRNA from alignment at P-wetherbeei_contig5553:1350..2999-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig5553.3.1 ID=mRNA_P-wetherbeei_contig5553.3.1|Name=mRNA_P-wetherbeei_contig5553.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1650bp|location=Sequence derived from alignment at P-wetherbeei_contig5553:1350..2999- (Phaeothamnion wetherbeei SAG_119_79)
CGACCATCCGTCGCTGGGACGCATACTCCGTTCTCCGTCGCAATGCCCTT
TTTCGCTCCCATTGAGCCGCATTCTTGTTGCACGAAGGATTGCACGGTCA
TTGACGGACGGGTCGTTTCAGTTTTCTCTCGGGAGCACGTGTAGTGTGAT
GATTCGCATCGGGAGGGGAAGTTTCAGGAGAAGAAGAGGCACATGGAAGG
GCTGTTTTCGAGAGAAAAGAAAGGTATGAGCGTCAGGGCCGCACCTGGTG
GAAGAGCGGTTACGGAGATGCGACGAAGGAGGCGACGCAGCTCCCTGAAC
CTGTGTGCCGGCACTACAGCAGTGGTTTGCGCCTGTGTCGCGGTGCGCCA
ACATCTCGCTGCCAGCGGGGAAGAAGGCAGGCCCAGCAGTGGAAATGGTG
GCAGCGCGAATGGTCAGTGCGGCAAAGGCATTGGCGGGGCAACGCGATGG
CTCGCAGCAGCTCAGGATCTCTCGCGCGGCAACGAGCGCAGCCCGGGCCT
CGCATACACGCAGCGGCTCGGCGCAGGCAGCGCCGCTCATGGCCACCGTC
ATTCTTTGTCTCCGCGAACCAGAGGAGCCGACTTTGTGGAAGACGGCGCT
CCAATGCCCACCTTTGCAGATATCTGGCTCGAAGACGACATCGACGACGG
CAGAGGCGATGTTTCCGAGGCCGGAGCGGCGTCGACAGACCCGGCGACTT
CTTCGCTTGCGGAAGACGCCATTTTACCTATTGCCGGAGCTGCAAATGGA
ACGACTCAAATCTCTGCAGCTCTGGCGCCAGCTGCTGCTGACCCTCCGGT
GCCGCTGCCAGCGCCTGCTCCGCCGGCACGGCGGAAGTTTCTCGGCGCCG
TCGTCGAAGTTTACGAGAACGAGGCGTGGGGTTGGGGCCTTGGCGCCCTC
GGCTCGATGGGACGGCCAACAGGAGGAGCGGCGGCAGCGTTAGCCGGAAA
GGCCCGCCCGCCGCGGTGGTCTTACCGGGATGGCTCGGCGGCGCTGGCAC
CCGGAGAAGTCCTCTGCCCCGACGACTGGGAGTGGGCGTCCGAGTGGCAC
TTTGACCGCACTGGGTGCCGCGACCGAGATGGCTGGGAGTACGCTTCTGG
CCCCGGCGAATTCGGCGGCGGCGGCGGCGGCGACGGCAGCGATTCTCGAT
GGAACCAACGCGGCCGCAAGGGCCGAGCTTGGGCGGACGGGTGGCGGCGG
CGCCGATGGGTGCGCGCCATGCGGCCGATTGCGGGTTCGCTGACGGCAGC
AGCGGCCGCGGTGGCCACAAACGCCGCCGCTGAAGCCATCGCGGAGGAGG
AGGACGCCGCAATGGCGACGGCAGCCGCCGCGGCGGCGGCAGCGGCGGCA
AAAGTGGTGGTTCGTCCCGAGCCGCTGGCCGAGGCGGTCACGGCGGCCGC
GGCGGGCGCGGCGGTTATGACGGTTACGGGCGCCCCGGCACTGCATGCGC
ACGCATATGTGCTGGATCCAGACGAGGGATTTGCCTTGGGGCTTGGACTT
GGCCTCAGTTCCACATCCGGCAGCGTTACTCCTGCTGCCGGCGCCGCTAC
TGCCAACACCGGCTGGCGGGACGATTATCCTTCTTACATGGGGCGCGATC
TGCTGCCGGTGCCGCCGGCAGCCATCGCCGTGGCGAAAGCGACAGCGCCG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig5553:1350..2999-

>mRNA_P-wetherbeei_contig5553.3.1 ID=mRNA_P-wetherbeei_contig5553.3.1|Name=mRNA_P-wetherbeei_contig5553.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1458bp|location=Sequence derived from alignment at P-wetherbeei_contig5553:1350..2999- (Phaeothamnion wetherbeei SAG_119_79)
ATGGAAGGGCTGTTTTCGAGAGAAAAGAAAGGTATGAGCGTCAGGGCCGC
ACCTGGTGGAAGAGCGGTTACGGAGATGCGACGAAGGAGGCGACGCAGCT
CCCTGAACCTGTGTGCCGGCACTACAGCAGTGGTTTGCGCCTGTGTCGCG
GTGCGCCAACATCTCGCTGCCAGCGGGGAAGAAGGCAGGCCCAGCAGTGG
AAATGGTGGCAGCGCGAATGGTCAGTGCGGCAAAGGCATTGGCGGGGCAA
CGCGATGGCTCGCAGCAGCTCAGGATCTCTCGCGCGGCAACGAGCGCAGC
CCGGGCCTCGCATACACGCAGCGGCTCGGCGCAGGCAGCGCCGCTCATGG
CCACCGTCATTCTTTGTCTCCGCGAACCAGAGGAGCCGACTTTGTGGAAG
ACGGCGCTCCAATGCCCACCTTTGCAGATATCTGGCTCGAAGACGACATC
GACGACGGCAGAGGCGATGTTTCCGAGGCCGGAGCGGCGTCGACAGACCC
GGCGACTTCTTCGCTTGCGGAAGACGCCATTTTACCTATTGCCGGAGCTG
CAAATGGAACGACTCAAATCTCTGCAGCTCTGGCGCCAGCTGCTGCTGAC
CCTCCGGTGCCGCTGCCAGCGCCTGCTCCGCCGGCACGGCGGAAGTTTCT
CGGCGCCGTCGTCGAAGTTTACGAGAACGAGGCGTGGGGTTGGGGCCTTG
GCGCCCTCGGCTCGATGGGACGGCCAACAGGAGGAGCGGCGGCAGCGTTA
GCCGGAAAGGCCCGCCCGCCGCGGTGGTCTTACCGGGATGGCTCGGCGGC
GCTGGCACCCGGAGAAGTCCTCTGCCCCGACGACTGGGAGTGGGCGTCCG
AGTGGCACTTTGACCGCACTGGGTGCCGCGACCGAGATGGCTGGGAGTAC
GCTTCTGGCCCCGGCGAATTCGGCGGCGGCGGCGGCGGCGACGGCAGCGA
TTCTCGATGGAACCAACGCGGCCGCAAGGGCCGAGCTTGGGCGGACGGGT
GGCGGCGGCGCCGATGGGTGCGCGCCATGCGGCCGATTGCGGGTTCGCTG
ACGGCAGCAGCGGCCGCGGTGGCCACAAACGCCGCCGCTGAAGCCATCGC
GGAGGAGGAGGACGCCGCAATGGCGACGGCAGCCGCCGCGGCGGCGGCAG
CGGCGGCAAAAGTGGTGGTTCGTCCCGAGCCGCTGGCCGAGGCGGTCACG
GCGGCCGCGGCGGGCGCGGCGGTTATGACGGTTACGGGCGCCCCGGCACT
GCATGCGCACGCATATGTGCTGGATCCAGACGAGGGATTTGCCTTGGGGC
TTGGACTTGGCCTCAGTTCCACATCCGGCAGCGTTACTCCTGCTGCCGGC
GCCGCTACTGCCAACACCGGCTGGCGGGACGATTATCCTTCTTACATGGG
GCGCGATCTGCTGCCGGTGCCGCCGGCAGCCATCGCCGTGGCGAAAGCGA
CAGCGCCG
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