mRNA_P-wetherbeei_contig55508.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig55508.1.1
Unique NamemRNA_P-wetherbeei_contig55508.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig55508.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig55508contigP-wetherbeei_contig55508:26..439 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog1037409.BJ6T_51090
Model size414
Max annot lvl28211|Alphaproteobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue3.38e-06
EggNOG OGs2CETC@1|root,3441A@2|Bacteria,1RAR4@1224|Proteobacteria,2U6C6@28211|Alphaproteobacteria,3JY9G@41294|Bradyrhizobiaceae
Cds size414
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186826.6366048-CDS-P-wetherbeei_contig55508:25..4391683186826.6366048-CDS-P-wetherbeei_contig55508:25..439Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig55508 26..439 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig55508.1.1prot_P-wetherbeei_contig55508.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig55508 26..439 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig55508.1.1

>prot_P-wetherbeei_contig55508.1.1 ID=prot_P-wetherbeei_contig55508.1.1|Name=mRNA_P-wetherbeei_contig55508.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=138bp
AGQPAAAAQLKGYAWICPEKKEMCYWHKAVVAPPKGWTEDEAWTQRYKSL
MMFPNGDRSRSKPVMYVRAHAGDKDLGIDAYIAVAQERWMKKVTDSTIEP
LADFPRAGKPAFKVFLYKNPSQADQAFELTAFLKDTDN
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mRNA from alignment at P-wetherbeei_contig55508:26..439+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig55508.1.1 ID=mRNA_P-wetherbeei_contig55508.1.1|Name=mRNA_P-wetherbeei_contig55508.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=414bp|location=Sequence derived from alignment at P-wetherbeei_contig55508:26..439+ (Phaeothamnion wetherbeei SAG_119_79)
GCAGGCCAGCCTGCCGCGGCAGCCCAGCTCAAAGGCTACGCGTGGATCTG
CCCGGAAAAGAAGGAGATGTGCTATTGGCACAAGGCGGTCGTCGCGCCGC
CGAAGGGCTGGACCGAGGATGAAGCGTGGACGCAGCGCTACAAGTCCCTC
ATGATGTTTCCCAACGGCGACCGGAGCCGGTCGAAGCCGGTGATGTACGT
GCGCGCGCACGCCGGCGACAAGGATCTGGGGATCGACGCCTACATCGCGG
TCGCGCAGGAGCGCTGGATGAAGAAGGTCACCGACAGCACGATCGAGCCG
CTCGCCGACTTCCCCCGCGCGGGCAAGCCGGCATTCAAGGTATTCCTGTA
CAAGAACCCGTCACAGGCCGATCAGGCGTTCGAGTTGACAGCTTTTCTGA
AGGACACCGACAAC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig55508:26..439+

>mRNA_P-wetherbeei_contig55508.1.1 ID=mRNA_P-wetherbeei_contig55508.1.1|Name=mRNA_P-wetherbeei_contig55508.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=414bp|location=Sequence derived from alignment at P-wetherbeei_contig55508:26..439+ (Phaeothamnion wetherbeei SAG_119_79)
GCAGGCCAGCCTGCCGCGGCAGCCCAGCTCAAAGGCTACGCGTGGATCTG
CCCGGAAAAGAAGGAGATGTGCTATTGGCACAAGGCGGTCGTCGCGCCGC
CGAAGGGCTGGACCGAGGATGAAGCGTGGACGCAGCGCTACAAGTCCCTC
ATGATGTTTCCCAACGGCGACCGGAGCCGGTCGAAGCCGGTGATGTACGT
GCGCGCGCACGCCGGCGACAAGGATCTGGGGATCGACGCCTACATCGCGG
TCGCGCAGGAGCGCTGGATGAAGAAGGTCACCGACAGCACGATCGAGCCG
CTCGCCGACTTCCCCCGCGCGGGCAAGCCGGCATTCAAGGTATTCCTGTA
CAAGAACCCGTCACAGGCCGATCAGGCGTTCGAGTTGACAGCTTTTCTGA
AGGACACCGACAAC
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