mRNA_P-wetherbeei_contig55500.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig55500.1.1
Unique NamemRNA_P-wetherbeei_contig55500.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig55500.1.1 vs. uniprot
Match: A0A6L6AL49_9ACTN (Phosphotransferase n=3 Tax=root TaxID=1 RepID=A0A6L6AL49_9ACTN)

HSP 1 Score: 317 bits (811), Expect = 2.070e-107
Identity = 155/174 (89.08%), Postives = 163/174 (93.68%), Query Frame = 1
Query:    1 LTLLAEHAPGLAPRPLRREDGERPVIVMERISGDPLAPRPLTAGQTEALGAALRRLYDVPVQAVTDAGIGPRRYGAAEHARVMVEWLADDHDLRECRDPGLVGEALDAARAFVADPPVPEPRFTALGIADLNPANVLWDGRDVRLVDFEDGGLSDPAYELADHVEHLGSRLPGV 522
            LTLLAEHAPGLAPRPLRREDG  PVIVMER+ GDPLAPRPLTA QTEALGAALRRLYDVPV+AV +AGIGPRRYGAAEHA+VMVEWLA+D DLRECR+PGLV EAL+ ARAFVADPP  +PR TALGIADLNPANVLWDGRDVRLVDFEDGGLSDPAYELADHVEHLGSRLPGV
Sbjct:   34 LTLLAEHAPGLAPRPLRREDGGTPVIVMERVPGDPLAPRPLTAAQTEALGAALRRLYDVPVEAVREAGIGPRRYGAAEHAQVMVEWLANDCDLRECREPGLVAEALEVARAFVADPPGAKPRLTALGIADLNPANVLWDGRDVRLVDFEDGGLSDPAYELADHVEHLGSRLPGV 207          
BLAST of mRNA_P-wetherbeei_contig55500.1.1 vs. uniprot
Match: A0A4Q2T6R1_9ACTN (Aminoglycoside phosphotransferase family protein n=1 Tax=Nocardioides zhouii TaxID=1168729 RepID=A0A4Q2T6R1_9ACTN)

HSP 1 Score: 286 bits (733), Expect = 1.510e-95
Identity = 139/174 (79.89%), Postives = 151/174 (86.78%), Query Frame = 1
Query:    1 LTLLAEHAPGLAPRPLRREDGERPVIVMERISGDPLAPRPLTAGQTEALGAALRRLYDVPVQAVTDAGIGPRRYGAAEHARVMVEWLADDHDLRECRDPGLVGEALDAARAFVADPPVPEPRFTALGIADLNPANVLWDGRDVRLVDFEDGGLSDPAYELADHVEHLGSRLPGV 522
            LTLLAEHAPGLAPRPLRREDG  PVIVMER+ G+PLAPRPLT  QT ALG+ALRRLY VPV+ V +AGIGPRRYG  EHA ++VEWLA+DHDL ECRDP LV EA++ ARA+ A PP+PEPR TALGIADLNP NVLWDGR  RLVDFEDGGLSDPAYELADHVEHLGSRLP V
Sbjct:   34 LTLLAEHAPGLAPRPLRREDGATPVIVMERLPGEPLAPRPLTIFQTAALGSALRRLYAVPVETVREAGIGPRRYGVREHAPLLVEWLAEDHDLTECRDPQLVAEAVEVARAYAAAPPLPEPRVTALGIADLNPPNVLWDGRVARLVDFEDGGLSDPAYELADHVEHLGSRLPRV 207          
BLAST of mRNA_P-wetherbeei_contig55500.1.1 vs. uniprot
Match: UPI001552DEC1 (aminoglycoside phosphotransferase family protein n=1 Tax=Nocardioides sp. zg-1308 TaxID=2736253 RepID=UPI001552DEC1)

HSP 1 Score: 286 bits (731), Expect = 3.050e-95
Identity = 141/174 (81.03%), Postives = 150/174 (86.21%), Query Frame = 1
Query:    1 LTLLAEHAPGLAPRPLRREDGERPVIVMERISGDPLAPRPLTAGQTEALGAALRRLYDVPVQAVTDAGIGPRRYGAAEHARVMVEWLADDHDLRECRDPGLVGEALDAARAFVADPPVPEPRFTALGIADLNPANVLWDGRDVRLVDFEDGGLSDPAYELADHVEHLGSRLPGV 522
            LTLLAEHAPGLAPRPLRREDGE PVIVMER+ G PLA RPL   QT ALGA LRRLYDVP++AV  AGIG RRYGA +HAR++VEWL DD DL EC DP LV +AL  ARA+VADPP+PEPR TALGIADLNP NVLWDGR VRLVDFEDGGLSDPAYELADHVEHLGSRLPGV
Sbjct:   34 LTLLAEHAPGLAPRPLRREDGETPVIVMERVPGSPLAARPLDHAQTAALGATLRRLYDVPIEAVRAAGIGERRYGARQHARLLVEWLTDDVDLGECLDPPLVSKALQLARAYVADPPLPEPRDTALGIADLNPPNVLWDGRVVRLVDFEDGGLSDPAYELADHVEHLGSRLPGV 207          
BLAST of mRNA_P-wetherbeei_contig55500.1.1 vs. uniprot
Match: UPI001CD139D1 (aminoglycoside phosphotransferase family protein n=2 Tax=Nocardioides cavernae TaxID=1921566 RepID=UPI001CD139D1)

HSP 1 Score: 283 bits (725), Expect = 2.750e-94
Identity = 137/174 (78.74%), Postives = 154/174 (88.51%), Query Frame = 1
Query:    1 LTLLAEHAPGLAPRPLRREDGERPVIVMERISGDPLAPRPLTAGQTEALGAALRRLYDVPVQAVTDAGIGPRRYGAAEHARVMVEWLADDHDLRECRDPGLVGEALDAARAFVADPPVPEPRFTALGIADLNPANVLWDGRDVRLVDFEDGGLSDPAYELADHVEHLGSRLPGV 522
            LT+LAEHAPGLAPRPLRREDG+RPV+VM R+ G+P+APRPLT+G+T ALGAALRRLYDVPV+AVT AGIGPRRYGA     ++VEWLAD+HDL +CRDP LV +AL  ARA+VA PP+PEPR TALGIADLNPANVL    +VRLVDFEDGGLSDPAYELADHVEHLGSRLPGV
Sbjct:   37 LTVLAEHAPGLAPRPLRREDGDRPVVVMSRVPGEPVAPRPLTSGETAALGAALRRLYDVPVEAVTAAGIGPRRYGADTLPGMLVEWLADEHDLEQCRDPALVADALALARAYVAAPPLPEPRLTALGIADLNPANVLLHDGEVRLVDFEDGGLSDPAYELADHVEHLGSRLPGV 210          
BLAST of mRNA_P-wetherbeei_contig55500.1.1 vs. uniprot
Match: A0A0Q6VFY4_9ACTN (APH domain-containing protein n=2 Tax=root TaxID=1 RepID=A0A0Q6VFY4_9ACTN)

HSP 1 Score: 281 bits (719), Expect = 2.030e-93
Identity = 140/174 (80.46%), Postives = 150/174 (86.21%), Query Frame = 1
Query:    1 LTLLAEHAPGLAPRPLRREDGERPVIVMERISGDPLAPRPLTAGQTEALGAALRRLYDVPVQAVTDAGIGPRRYGAAEHARVMVEWLADDHDLRECRDPGLVGEALDAARAFVADPPVPEPRFTALGIADLNPANVLWDGRDVRLVDFEDGGLSDPAYELADHVEHLGSRLPGV 522
            L LLAEHAPGLAPRPLRREDG  PVIVMER+ G  LAP+PL A +T ALG ALRRLYDVPV AV DAGIGPRRYGA EH +VM +WLADD DL ECRDP LV EAL+AAR F+ADPP+PEP  TALGIADLNPANV+WDGR VRL+DFEDGGLSDPAYELADHVEHLGSRLP V
Sbjct:   34 LALLAEHAPGLAPRPLRREDGATPVIVMERLPGRSLAPQPLDARRTAALGTALRRLYDVPVAAVRDAGIGPRRYGAREHVQVMQDWLADDVDLGECRDPLLVREALEAARTFLADPPLPEPCETALGIADLNPANVMWDGRVVRLLDFEDGGLSDPAYELADHVEHLGSRLPAV 207          
BLAST of mRNA_P-wetherbeei_contig55500.1.1 vs. uniprot
Match: UPI00191F540B (Aminoglycoside phosphotransferase family protein n=2 Tax=Nocardioides baculatus TaxID=2801337 RepID=UPI00191F540B)

HSP 1 Score: 280 bits (715), Expect = 8.250e-93
Identity = 139/174 (79.89%), Postives = 148/174 (85.06%), Query Frame = 1
Query:    1 LTLLAEHAPGLAPRPLRREDGERPVIVMERISGDPLAPRPLTAGQTEALGAALRRLYDVPVQAVTDAGIGPRRYGAAEHARVMVEWLADDHDLRECRDPGLVGEALDAARAFVADPPVPEPRFTALGIADLNPANVLWDGRDVRLVDFEDGGLSDPAYELADHVEHLGSRLPGV 522
            LTLLAEHAPGLAPRPLRREDG  PVIVMERI G  L PRPLT  QTEALG +LRRLYDVPV+A  DAG+G RRY A   A  MV WLADD+DL ECRDP LV +ALDAARA+VA PP+PEPR +ALGIADLNPANV+WDGR  RLVDFEDGGLSDPAYELADHVEHLGSRLPGV
Sbjct:   34 LTLLAEHAPGLAPRPLRREDGATPVIVMERIPGAHLEPRPLTPTQTEALGTSLRRLYDVPVEAARDAGVGERRYPAGRLASEMVGWLADDYDLDECRDPALVADALDAARAWVAAPPLPEPRLSALGIADLNPANVMWDGRVARLVDFEDGGLSDPAYELADHVEHLGSRLPGV 207          
BLAST of mRNA_P-wetherbeei_contig55500.1.1 vs. uniprot
Match: UPI001F15A2CB (aminoglycoside phosphotransferase family protein n=1 Tax=Nocardioides sp. KLBMP 9356 TaxID=2911371 RepID=UPI001F15A2CB)

HSP 1 Score: 278 bits (710), Expect = 4.750e-92
Identity = 135/174 (77.59%), Postives = 149/174 (85.63%), Query Frame = 1
Query:    1 LTLLAEHAPGLAPRPLRREDGERPVIVMERISGDPLAPRPLTAGQTEALGAALRRLYDVPVQAVTDAGIGPRRYGAAEHARVMVEWLADDHDLRECRDPGLVGEALDAARAFVADPPVPEPRFTALGIADLNPANVLWDGRDVRLVDFEDGGLSDPAYELADHVEHLGSRLPGV 522
            L LLAEHAPGLAPRPLRRED E PVIVMER+ G+PLAPRPL A QT+ALGA+LRRLYDVP +AV+ +G+G RR+GA EH  ++VEWL   HDL +C DP LV EAL AARAFVA P +PEPR TALGIADLNPANV+WDGR  RLVDFEDGGLSDPAYELADHVEHLGSRLPGV
Sbjct:   34 LGLLAEHAPGLAPRPLRREDAETPVIVMERLRGEPLAPRPLDATQTQALGASLRRLYDVPFEAVSASGVGARRHGAREHVAILVEWLGRAHDLSDCADPALVAEALAAARAFVAAPALPEPRLTALGIADLNPANVVWDGRVARLVDFEDGGLSDPAYELADHVEHLGSRLPGV 207          
BLAST of mRNA_P-wetherbeei_contig55500.1.1 vs. uniprot
Match: UPI0015553D09 (aminoglycoside phosphotransferase family protein n=1 Tax=Nocardioides sp. zg-1230 TaxID=2736601 RepID=UPI0015553D09)

HSP 1 Score: 275 bits (704), Expect = 3.870e-91
Identity = 140/174 (80.46%), Postives = 149/174 (85.63%), Query Frame = 1
Query:    1 LTLLAEHAPGLAPRPLRREDGERPVIVMERISGDPLAPRPLTAGQTEALGAALRRLYDVPVQAVTDAGIGPRRYGAAEHARVMVEWLADDHDLRECRDPGLVGEALDAARAFVADPPVPEPRFTALGIADLNPANVLWDGRDVRLVDFEDGGLSDPAYELADHVEHLGSRLPGV 522
            LTLLAEHAPGLAPRPLRREDGERPVIVMER+ G  L PRPLT  +T ALGAALRRLYDVPV+AV DAGIGPRRY A   A V+VEWLADD+DL ECRDP LV +AL  ARA+VA PP+PEPR TALGIADLNPANVL     VR+VDFEDGGLSDPAYELADHVEHLGSRLPGV
Sbjct:   34 LTLLAEHAPGLAPRPLRREDGERPVIVMERLPGAHLEPRPLTPDRTRALGAALRRLYDVPVEAVRDAGIGPRRYDAEALAAVLVEWLADDYDLGECRDPDLVADALAHARAYVAAPPLPEPRATALGIADLNPANVLVHEGTVRVVDFEDGGLSDPAYELADHVEHLGSRLPGV 207          
BLAST of mRNA_P-wetherbeei_contig55500.1.1 vs. uniprot
Match: UPI001E43970A (aminoglycoside phosphotransferase family protein n=1 Tax=Nocardioides okcheonensis TaxID=2894081 RepID=UPI001E43970A)

HSP 1 Score: 274 bits (701), Expect = 1.260e-90
Identity = 135/174 (77.59%), Postives = 146/174 (83.91%), Query Frame = 1
Query:    1 LTLLAEHAPGLAPRPLRREDGERPVIVMERISGDPLAPRPLTAGQTEALGAALRRLYDVPVQAVTDAGIGPRRYGAAEHARVMVEWLADDHDLRECRDPGLVGEALDAARAFVADPPVPEPRFTALGIADLNPANVLWDGRDVRLVDFEDGGLSDPAYELADHVEHLGSRLPGV 522
            L LLAEHAPGLAPRPLRREDG  PV+VMER+ G+PLAPRPL+A QT ALGAALRR+YDV   A+ DAGIG R +G  EHA +MVEWL  + DL  CRDPGLV EAL AARA+VADP +PEP  T LGIADLNPANVLWDGR VRLVDFED GLSDPAYELADHVEHLGSRLPGV
Sbjct:   38 LALLAEHAPGLAPRPLRREDGATPVVVMERVPGEPLAPRPLSAAQTAALGAALRRMYDVAPTALADAGIGGRSHGPREHADLMVEWLGREVDLAPCRDPGLVAEALAAARAYVADPRLPEPHLTCLGIADLNPANVLWDGRAVRLVDFEDAGLSDPAYELADHVEHLGSRLPGV 211          
BLAST of mRNA_P-wetherbeei_contig55500.1.1 vs. uniprot
Match: A0A1I0ZTI9_9ACTN (Predicted kinase, aminoglycoside phosphotransferase (APT) family n=1 Tax=Nocardioides alpinus TaxID=748909 RepID=A0A1I0ZTI9_9ACTN)

HSP 1 Score: 263 bits (671), Expect = 4.000e-86
Identity = 134/174 (77.01%), Postives = 142/174 (81.61%), Query Frame = 1
Query:    1 LTLLAEHAPGLAPRPLRREDGERPVIVMERISGDPLAPRPLTAGQTEALGAALRRLYDVPVQAVTDAGIGPRRYGAAEHARVMVEWLADDHDLRECRDPGLVGEALDAARAFVADPPVPEPRFTALGIADLNPANVLWDGRDVRLVDFEDGGLSDPAYELADHVEHLGSRLPGV 522
            L LLAEHAPGLAPRPLRREDGE PVIVMERI G PLAPRPL+A QT ALGA+LRRLYDVPVQAVTDAGIGPR  GAA+    +   LAD HDL  CRDP LV  A   AR ++ DPP+PEPR + LGIADLNPANVLWDG   RLVDFEDGGLSDPAYELADHVEHLGSRL GV
Sbjct:   34 LVLLAEHAPGLAPRPLRREDGETPVIVMERIPGGPLAPRPLSARQTVALGASLRRLYDVPVQAVTDAGIGPRNGGAADPPSAIHPRLADHHDLSACRDPELVRTARAVAREWLRDPPLPEPRRSVLGIADLNPANVLWDGEQCRLVDFEDGGLSDPAYELADHVEHLGSRLHGV 207          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig55500.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6L6AL49_9ACTN2.070e-10789.08Phosphotransferase n=3 Tax=root TaxID=1 RepID=A0A6... [more]
A0A4Q2T6R1_9ACTN1.510e-9579.89Aminoglycoside phosphotransferase family protein n... [more]
UPI001552DEC13.050e-9581.03aminoglycoside phosphotransferase family protein n... [more]
UPI001CD139D12.750e-9478.74aminoglycoside phosphotransferase family protein n... [more]
A0A0Q6VFY4_9ACTN2.030e-9380.46APH domain-containing protein n=2 Tax=root TaxID=1... [more]
UPI00191F540B8.250e-9379.89Aminoglycoside phosphotransferase family protein n... [more]
UPI001F15A2CB4.750e-9277.59aminoglycoside phosphotransferase family protein n... [more]
UPI0015553D093.870e-9180.46aminoglycoside phosphotransferase family protein n... [more]
UPI001E43970A1.260e-9077.59aminoglycoside phosphotransferase family protein n... [more]
A0A1I0ZTI9_9ACTN4.000e-8677.01Predicted kinase, aminoglycoside phosphotransferas... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig55500contigP-wetherbeei_contig55500:2..523 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog110319.CF8_1104
PFAMsAPH
Model size522
Max annot lvl201174|Actinobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue3.69e-31
EggNOG OGsCOG0510@1|root,COG0510@2|Bacteria,2I576@201174|Actinobacteria,4DWXS@85009|Propionibacteriales
DescriptionPhosphotransferase enzyme family
Cds size522
COG categoryM
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186826.609336-CDS-P-wetherbeei_contig55500:1..5231683186826.609336-CDS-P-wetherbeei_contig55500:1..523Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig55500 2..523 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig55500.1.1prot_P-wetherbeei_contig55500.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig55500 2..523 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig55500.1.1

>prot_P-wetherbeei_contig55500.1.1 ID=prot_P-wetherbeei_contig55500.1.1|Name=mRNA_P-wetherbeei_contig55500.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=174bp
LTLLAEHAPGLAPRPLRREDGERPVIVMERISGDPLAPRPLTAGQTEALG
AALRRLYDVPVQAVTDAGIGPRRYGAAEHARVMVEWLADDHDLRECRDPG
LVGEALDAARAFVADPPVPEPRFTALGIADLNPANVLWDGRDVRLVDFED
GGLSDPAYELADHVEHLGSRLPGV
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mRNA from alignment at P-wetherbeei_contig55500:2..523-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig55500.1.1 ID=mRNA_P-wetherbeei_contig55500.1.1|Name=mRNA_P-wetherbeei_contig55500.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=522bp|location=Sequence derived from alignment at P-wetherbeei_contig55500:2..523- (Phaeothamnion wetherbeei SAG_119_79)
CTGACGCTGCTCGCGGAGCACGCGCCCGGCCTCGCGCCGCGGCCGTTGCG CCGCGAGGACGGGGAGAGGCCGGTGATCGTGATGGAGCGGATCTCCGGCG ACCCGCTCGCACCGCGGCCGCTGACGGCCGGCCAGACGGAGGCGCTCGGT GCCGCGCTGCGCCGGTTGTACGACGTACCGGTGCAGGCAGTGACGGACGC GGGCATCGGCCCGCGGAGGTACGGCGCCGCCGAGCACGCACGGGTGATGG TCGAGTGGCTGGCGGACGACCACGACCTCCGGGAGTGCCGCGACCCGGGG CTGGTCGGCGAGGCGCTCGACGCCGCGCGTGCCTTCGTCGCCGACCCGCC GGTGCCCGAACCCCGGTTCACCGCACTCGGCATCGCCGACCTCAACCCGG CCAACGTGCTCTGGGACGGCCGCGACGTGCGGCTCGTCGACTTCGAGGAC GGCGGCCTCAGCGACCCGGCGTACGAGCTCGCCGACCACGTCGAGCACCT CGGCAGCCGCCTCCCGGGGGTG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig55500:2..523-

>mRNA_P-wetherbeei_contig55500.1.1 ID=mRNA_P-wetherbeei_contig55500.1.1|Name=mRNA_P-wetherbeei_contig55500.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=522bp|location=Sequence derived from alignment at P-wetherbeei_contig55500:2..523- (Phaeothamnion wetherbeei SAG_119_79)
CTGACGCTGCTCGCGGAGCACGCGCCCGGCCTCGCGCCGCGGCCGTTGCG
CCGCGAGGACGGGGAGAGGCCGGTGATCGTGATGGAGCGGATCTCCGGCG
ACCCGCTCGCACCGCGGCCGCTGACGGCCGGCCAGACGGAGGCGCTCGGT
GCCGCGCTGCGCCGGTTGTACGACGTACCGGTGCAGGCAGTGACGGACGC
GGGCATCGGCCCGCGGAGGTACGGCGCCGCCGAGCACGCACGGGTGATGG
TCGAGTGGCTGGCGGACGACCACGACCTCCGGGAGTGCCGCGACCCGGGG
CTGGTCGGCGAGGCGCTCGACGCCGCGCGTGCCTTCGTCGCCGACCCGCC
GGTGCCCGAACCCCGGTTCACCGCACTCGGCATCGCCGACCTCAACCCGG
CCAACGTGCTCTGGGACGGCCGCGACGTGCGGCTCGTCGACTTCGAGGAC
GGCGGCCTCAGCGACCCGGCGTACGAGCTCGCCGACCACGTCGAGCACCT
CGGCAGCCGCCTCCCGGGGGTG
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