mRNA_P-wetherbeei_contig55456.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig55456.2.1
Unique NamemRNA_P-wetherbeei_contig55456.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig55456.2.1 vs. uniprot
Match: A0A523P5Z4_9PROT (Uncharacterized protein n=1 Tax=Proteobacteria bacterium TaxID=1977087 RepID=A0A523P5Z4_9PROT)

HSP 1 Score: 84.0 bits (206), Expect = 2.040e-17
Identity = 37/67 (55.22%), Postives = 54/67 (80.60%), Query Frame = 1
Query:    1 DLDANAVSDFLPDSDRFEGDTGVHGHEFEIQYEIIKHIVLSLDYYRVQQTATNVDENRLQADISVKF 201
            D++AN+V DFLPDS+RF+G TG+ GHE E+ Y ++K++ L LD+Y V+  AT+VD+  LQAD++VKF
Sbjct:  358 DVEANSVPDFLPDSNRFDGLTGIRGHELEVTYALMKNVKLGLDFYIVEDIATDVDQEVLQADLTVKF 424          
BLAST of mRNA_P-wetherbeei_contig55456.2.1 vs. uniprot
Match: A0A2D7KNX9_9GAMM (Uncharacterized protein n=3 Tax=Gammaproteobacteria TaxID=1236 RepID=A0A2D7KNX9_9GAMM)

HSP 1 Score: 83.2 bits (204), Expect = 3.820e-17
Identity = 38/67 (56.72%), Postives = 48/67 (71.64%), Query Frame = 1
Query:    1 DLDANAVSDFLPDSDRFEGDTGVHGHEFEIQYEIIKHIVLSLDYYRVQQTATNVDENRLQADISVKF 201
            D+D NAV DFLPDSDRF GDTG+ GHE  + Y+I K + + LDYY  +   TNVD++ LQ D+ VKF
Sbjct:  355 DVDHNAVPDFLPDSDRFGGDTGIKGHEIAVGYKINKRVSVGLDYYATEDPVTNVDQDILQLDLKVKF 421          
BLAST of mRNA_P-wetherbeei_contig55456.2.1 vs. uniprot
Match: A0A1Z8WXQ0_9GAMM (Uncharacterized protein n=1 Tax=Methylococcaceae bacterium TMED69 TaxID=1986766 RepID=A0A1Z8WXQ0_9GAMM)

HSP 1 Score: 81.6 bits (200), Expect = 1.300e-16
Identity = 37/67 (55.22%), Postives = 48/67 (71.64%), Query Frame = 1
Query:    1 DLDANAVSDFLPDSDRFEGDTGVHGHEFEIQYEIIKHIVLSLDYYRVQQTATNVDENRLQADISVKF 201
            DL+ NAV DFLPDSDRF GDTG+ GHEF I Y++ K + L LD+Y  +   TNV++  LQ D+ +KF
Sbjct:  341 DLEHNAVPDFLPDSDRFNGDTGIKGHEFAIGYKLNKRVSLGLDFYATEDDVTNVNQEILQLDLKMKF 407          
BLAST of mRNA_P-wetherbeei_contig55456.2.1 vs. uniprot
Match: A0A1G0JZH3_9GAMM (Uncharacterized protein n=1 Tax=Gammaproteobacteria bacterium RIFCSPLOWO2_02_FULL_52_10 TaxID=1798297 RepID=A0A1G0JZH3_9GAMM)

HSP 1 Score: 78.2 bits (191), Expect = 2.320e-15
Identity = 37/67 (55.22%), Postives = 51/67 (76.12%), Query Frame = 1
Query:    1 DLDANAVSDFLPDSDRFEGDTGVHGHEFEIQYEIIKHIVLSLDYYRVQQTATNVDENRLQADISVKF 201
            DL+ NA  D LPDSDRF+G TGVHGHEF + Y++ K++ L LDYY ++ TA ++ +N LQ D++VKF
Sbjct:  346 DLEENAWPDILPDSDRFDGLTGVHGHEFILNYQVWKNVTLGLDYYIMENTA-DLGQNLLQMDVNVKF 411          
BLAST of mRNA_P-wetherbeei_contig55456.2.1 vs. uniprot
Match: A0A2D4S956_9GAMM (Uncharacterized protein n=1 Tax=Salinisphaeraceae bacterium TaxID=2026789 RepID=A0A2D4S956_9GAMM)

HSP 1 Score: 76.6 bits (187), Expect = 8.100e-15
Identity = 37/67 (55.22%), Postives = 45/67 (67.16%), Query Frame = 1
Query:    1 DLDANAVSDFLPDSDRFEGDTGVHGHEFEIQYEIIKHIVLSLDYYRVQQTATNVDENRLQADISVKF 201
            DLDANAV D  PDSDRF G T + GHE   +Y +  ++ L LD+Y V+  AT VDEN LQADI + F
Sbjct:  336 DLDANAVPDIFPDSDRFGGGTDIKGHEIAGEYALTDNVELGLDFYAVESKATGVDENLLQADIVIAF 402          
BLAST of mRNA_P-wetherbeei_contig55456.2.1 vs. uniprot
Match: A0A2E6E571_9ACTN (Uncharacterized protein n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A2E6E571_9ACTN)

HSP 1 Score: 72.0 bits (175), Expect = 3.640e-13
Identity = 32/66 (48.48%), Postives = 44/66 (66.67%), Query Frame = 1
Query:    4 LDANAVSDFLPDSDRFEGDTGVHGHEFEIQYEIIKHIVLSLDYYRVQQTATNVDENRLQADISVKF 201
            ++ NAV DFLPDSDRF GDTG+ GHEF + Y++ K   L LD+Y  +   + V++  LQ D+  KF
Sbjct:  338 VEHNAVPDFLPDSDRFNGDTGIKGHEFAVGYKVNKKTSLGLDFYATEDDDSGVEQEVLQLDLKYKF 403          
BLAST of mRNA_P-wetherbeei_contig55456.2.1 vs. uniprot
Match: A0A1G1Q354_9BACT (Uncharacterized protein n=2 Tax=unclassified Candidatus Omnitrophica TaxID=1047005 RepID=A0A1G1Q354_9BACT)

HSP 1 Score: 54.7 bits (130), Expect = 5.020e-7
Identity = 28/67 (41.79%), Postives = 40/67 (59.70%), Query Frame = 1
Query:    4 LDANAVSDFLPDSDRFEGDTGVHGHEFEIQYEIIKHIVLSLDYYRVQQT-ATNVDENRLQADISVKF 201
            L  +A  D  PDSDR++G TGV  HE  ++Y +  ++VL  DYY  +   A+   E+  QADI+ KF
Sbjct:  341 LQKDAWIDAFPDSDRYDGKTGVKSHEAILEYGLFDNVVLGFDYYNSRSLLASKAPESIFQADINFKF 407          
BLAST of mRNA_P-wetherbeei_contig55456.2.1 vs. uniprot
Match: A0A7C4X5P6_9BACT (Uncharacterized protein n=1 Tax=Candidatus Omnitrophica bacterium TaxID=2035772 RepID=A0A7C4X5P6_9BACT)

HSP 1 Score: 53.1 bits (126), Expect = 1.760e-6
Identity = 29/73 (39.73%), Postives = 39/73 (53.42%), Query Frame = 1
Query:    4 LDANAVSDFLPDSDRFEGDTGVHGHEFEIQYEIIKHIVLSLDYYRVQQTATNVD-------ENRLQADISVKF 201
            L  NA  DFLPDSDR+ G TGV  HE    Y + K++   +DYY    ++   D       EN +Q D++ KF
Sbjct:  358 LGTNAWPDFLPDSDRYGGRTGVRSHEVTFTYGLNKNVSFDVDYYLSDLSSGRSDVAGSGKRENLVQIDLNFKF 430          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig55456.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
A0A523P5Z4_9PROT2.040e-1755.22Uncharacterized protein n=1 Tax=Proteobacteria bac... [more]
A0A2D7KNX9_9GAMM3.820e-1756.72Uncharacterized protein n=3 Tax=Gammaproteobacteri... [more]
A0A1Z8WXQ0_9GAMM1.300e-1655.22Uncharacterized protein n=1 Tax=Methylococcaceae b... [more]
A0A1G0JZH3_9GAMM2.320e-1555.22Uncharacterized protein n=1 Tax=Gammaproteobacteri... [more]
A0A2D4S956_9GAMM8.100e-1555.22Uncharacterized protein n=1 Tax=Salinisphaeraceae ... [more]
A0A2E6E571_9ACTN3.640e-1348.48Uncharacterized protein n=1 Tax=Acidimicrobiaceae ... [more]
A0A1G1Q354_9BACT5.020e-741.79Uncharacterized protein n=2 Tax=unclassified Candi... [more]
A0A7C4X5P6_9BACT1.760e-639.73Uncharacterized protein n=1 Tax=Candidatus Omnitro... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig55456contigP-wetherbeei_contig55456:320..523 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size204
Hectar predicted targeting categoryother localisation
Exons1
Cds size204
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186826.228534-CDS-P-wetherbeei_contig55456:319..5231683186826.228534-CDS-P-wetherbeei_contig55456:319..523Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig55456 320..523 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig55456.2.1prot_P-wetherbeei_contig55456.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig55456 320..523 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig55456.2.1

>prot_P-wetherbeei_contig55456.2.1 ID=prot_P-wetherbeei_contig55456.2.1|Name=mRNA_P-wetherbeei_contig55456.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=68bp
DLDANAVSDFLPDSDRFEGDTGVHGHEFEIQYEIIKHIVLSLDYYRVQQT
ATNVDENRLQADISVKF*
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mRNA from alignment at P-wetherbeei_contig55456:320..523-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig55456.2.1 ID=mRNA_P-wetherbeei_contig55456.2.1|Name=mRNA_P-wetherbeei_contig55456.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=204bp|location=Sequence derived from alignment at P-wetherbeei_contig55456:320..523- (Phaeothamnion wetherbeei SAG_119_79)
GATCTTGACGCCAATGCGGTGTCGGATTTCCTGCCGGACTCCGATCGCTT TGAGGGTGATACCGGCGTGCACGGCCACGAGTTCGAGATTCAGTACGAGA TAATCAAACACATCGTACTCAGTCTCGACTACTACCGTGTTCAGCAGACT GCGACCAATGTCGACGAGAACCGTTTGCAGGCCGACATCAGCGTCAAGTT CTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig55456:320..523-

>mRNA_P-wetherbeei_contig55456.2.1 ID=mRNA_P-wetherbeei_contig55456.2.1|Name=mRNA_P-wetherbeei_contig55456.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=204bp|location=Sequence derived from alignment at P-wetherbeei_contig55456:320..523- (Phaeothamnion wetherbeei SAG_119_79)
GATCTTGACGCCAATGCGGTGTCGGATTTCCTGCCGGACTCCGATCGCTT
TGAGGGTGATACCGGCGTGCACGGCCACGAGTTCGAGATTCAGTACGAGA
TAATCAAACACATCGTACTCAGTCTCGACTACTACCGTGTTCAGCAGACT
GCGACCAATGTCGACGAGAACCGTTTGCAGGCCGACATCAGCGTCAAGTT
CTGA
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