mRNA_P-wetherbeei_contig55439.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig55439.2.1
Unique NamemRNA_P-wetherbeei_contig55439.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig55439.2.1 vs. uniprot
Match: A0A3N5XHE6_9PROT (Uncharacterized protein n=1 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A3N5XHE6_9PROT)

HSP 1 Score: 71.6 bits (174), Expect = 5.410e-15
Identity = 37/55 (67.27%), Postives = 45/55 (81.82%), Query Frame = 1 
Query:    1 LLCAACLSMSAIPAHSSGDAARGARLHDSCLGCHGSELYVPGRAKVKSLAALRKE 165
            LLC A L  +A+ AH++GDA RG RLH  CLGCHG+ELYVP RAKVK+LAAL++E
Sbjct:    9 LLCGA-LCGTAVAAHAAGDAVRGERLHVDCLGCHGTELYVPPRAKVKTLAALKQE 62
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BLAST of mRNA_P-wetherbeei_contig55439.2.1 vs. uniprot
Match: A0A7C2YEA2_9PROT (Uncharacterized protein n=1 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A7C2YEA2_9PROT)

HSP 1 Score: 70.9 bits (172), Expect = 1.120e-14
Identity = 32/46 (69.57%), Postives = 42/46 (91.30%), Query Frame = 1 
Query:   31 AIPAHSSGDAARGARLHDSCLGCHGSELYVPGRAKVKSLAALRKEI 168
            A+P  ++GDAARGA LH++CLGCHG+ELYVP +AKVKSL+AL+KE+
Sbjct:   19 AMPLAAAGDAARGAALHEACLGCHGTELYVPPKAKVKSLSALKKEV 64
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BLAST of mRNA_P-wetherbeei_contig55439.2.1 vs. uniprot
Match: A0A1F4ADK8_9PROT (Uncharacterized protein n=1 Tax=Betaproteobacteria bacterium RIFCSPLOWO2_02_64_14 TaxID=1797482 RepID=A0A1F4ADK8_9PROT)

HSP 1 Score: 68.9 bits (167), Expect = 5.800e-14
Identity = 30/39 (76.92%), Postives = 36/39 (92.31%), Query Frame = 1 
Query:   52 GDAARGARLHDSCLGCHGSELYVPGRAKVKSLAALRKEI 168
            GDAARG +LHD CLGCHG+ELYVP +AK+K+LAAL+KEI
Sbjct:   22 GDAARGVKLHDDCLGCHGTELYVPEKAKIKTLAALKKEI 60
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BLAST of mRNA_P-wetherbeei_contig55439.2.1 vs. uniprot
Match: A0A1F4D8U0_9PROT (Uncharacterized protein n=1 Tax=Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_62_58 TaxID=1797497 RepID=A0A1F4D8U0_9PROT)

HSP 1 Score: 66.6 bits (161), Expect = 4.980e-13
Identity = 34/56 (60.71%), Postives = 42/56 (75.00%), Query Frame = 1 
Query:    1 LLCAACLSMSAIPAHSSGDAARGARLHDSCLGCHGSELYVPGRAKVKSLAALRKEI 168
            LL A C    A P   SGD+A+GARLHDSCLGCHG+E+Y+P  AKVK+L  L+KE+
Sbjct:   11 LLGAFCAGCEAPP---SGDSAKGARLHDSCLGCHGTEIYLPPNAKVKTLTELKKEV 63
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BLAST of mRNA_P-wetherbeei_contig55439.2.1 vs. uniprot
Match: A0A1F4EIA1_9PROT (Uncharacterized protein n=1 Tax=Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_65_14 TaxID=1797501 RepID=A0A1F4EIA1_9PROT)

HSP 1 Score: 56.6 bits (135), Expect = 3.910e-9
Identity = 25/39 (64.10%), Postives = 31/39 (79.49%), Query Frame = 1 
Query:   52 GDAARGARLHDSCLGCHGSELYVPGRAKVKSLAALRKEI 168
            GD A+G RLH SCL CHG+E+YVP   K+ SLAALR+E+
Sbjct:   20 GDPAKGERLHQSCLQCHGTEVYVPPARKLSSLAALRREV 58
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BLAST of mRNA_P-wetherbeei_contig55439.2.1 vs. uniprot
Match: A0A6L4YLP8_9RHOO (Uncharacterized protein n=1 Tax=Rhodocyclaceae bacterium TaxID=1898103 RepID=A0A6L4YLP8_9RHOO)

HSP 1 Score: 51.2 bits (121), Expect = 5.780e-7
Identity = 22/39 (56.41%), Postives = 28/39 (71.79%), Query Frame = 1 
Query:   52 GDAARGARLHDSCLGCHGSELYVPGRAKVKSLAALRKEI 168
            GD  RG  +H  CL CHG+ELY   + K+KSLAALRK++
Sbjct:   26 GDPVRGMEVHKVCLDCHGTELYTSPKRKIKSLAALRKDV 64
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BLAST of mRNA_P-wetherbeei_contig55439.2.1 vs. uniprot
Match: A0A2H0JBX7_9BURK (Uncharacterized protein n=1 Tax=Comamonadaceae bacterium CG12_big_fil_rev_8_21_14_0_65_59_15 TaxID=1973952 RepID=A0A2H0JBX7_9BURK)

HSP 1 Score: 48.5 bits (114), Expect = 6.610e-6
Identity = 21/39 (53.85%), Postives = 28/39 (71.79%), Query Frame = 1 
Query:   52 GDAARGARLHDSCLGCHGSELYVPGRAKVKSLAALRKEI 168
            GD ARG ++H+ CL CHG+ELY     KVKSL AL +++
Sbjct:   26 GDPARGMKVHEVCLDCHGTELYTSPTRKVKSLQALHQDV 64
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig55439.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A3N5XHE6_9PROT5.410e-1567.27Uncharacterized protein n=1 Tax=Betaproteobacteria... [more]
A0A7C2YEA2_9PROT1.120e-1469.57Uncharacterized protein n=1 Tax=Betaproteobacteria... [more]
A0A1F4ADK8_9PROT5.800e-1476.92Uncharacterized protein n=1 Tax=Betaproteobacteria... [more]
A0A1F4D8U0_9PROT4.980e-1360.71Uncharacterized protein n=1 Tax=Betaproteobacteria... [more]
A0A1F4EIA1_9PROT3.910e-964.10Uncharacterized protein n=1 Tax=Betaproteobacteria... [more]
A0A6L4YLP8_9RHOO5.780e-756.41Uncharacterized protein n=1 Tax=Rhodocyclaceae bac... [more]
A0A2H0JBX7_9BURK6.610e-653.85Uncharacterized protein n=1 Tax=Comamonadaceae bac... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig55439contigP-wetherbeei_contig55439:357..524 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog1163617.SCD_n02150
PFAMsCytochrom_C
Model size168
Max annot lvl2|Bacteria
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Evalue1.42e-05
EggNOG OGsCOG2863@1|root,COG2863@2|Bacteria
Descriptioncytochrome
Cds size144
COG categoryC
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186826.0055692-UTR-P-wetherbeei_contig55439:356..3801683186826.0055692-UTR-P-wetherbeei_contig55439:356..380Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig55439 357..380 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186826.0169976-CDS-P-wetherbeei_contig55439:380..5241683186826.0169976-CDS-P-wetherbeei_contig55439:380..524Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig55439 381..524 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig55439.2.1prot_P-wetherbeei_contig55439.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig55439 381..524 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig55439.2.1

>prot_P-wetherbeei_contig55439.2.1 ID=prot_P-wetherbeei_contig55439.2.1|Name=mRNA_P-wetherbeei_contig55439.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=48bp
MSAIPAHSSGDAARGARLHDSCLGCHGSELYVPGRAKVKSLAALRKEI
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mRNA from alignment at P-wetherbeei_contig55439:357..524+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig55439.2.1 ID=mRNA_P-wetherbeei_contig55439.2.1|Name=mRNA_P-wetherbeei_contig55439.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=168bp|location=Sequence derived from alignment at P-wetherbeei_contig55439:357..524+ (Phaeothamnion wetherbeei SAG_119_79)
CTGCTGTGTGCAGCTTGCCTGTCAATGAGCGCAATCCCTGCCCACTCCTC
GGGTGATGCCGCGCGCGGCGCTCGCCTGCATGACTCCTGCCTGGGTTGCC
ATGGCAGCGAACTTTACGTGCCGGGGCGCGCCAAGGTGAAGTCGCTTGCG
GCGCTCCGGAAGGAAATC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig55439:357..524+

>mRNA_P-wetherbeei_contig55439.2.1 ID=mRNA_P-wetherbeei_contig55439.2.1|Name=mRNA_P-wetherbeei_contig55439.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=144bp|location=Sequence derived from alignment at P-wetherbeei_contig55439:357..524+ (Phaeothamnion wetherbeei SAG_119_79)
ATGAGCGCAATCCCTGCCCACTCCTCGGGTGATGCCGCGCGCGGCGCTCG
CCTGCATGACTCCTGCCTGGGTTGCCATGGCAGCGAACTTTACGTGCCGG
GGCGCGCCAAGGTGAAGTCGCTTGCGGCGCTCCGGAAGGAAATC
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