mRNA_P-wetherbeei_contig55439.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig55439.1.1
Unique NamemRNA_P-wetherbeei_contig55439.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig55439.1.1 vs. uniprot
Match: A0A7C2YD93_9PROT (Uncharacterized protein n=1 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A7C2YD93_9PROT)

HSP 1 Score: 84.7 bits (208), Expect = 1.270e-19
Identity = 46/64 (71.88%), Postives = 57/64 (89.06%), Query Frame = 1
Query:   49 AADTGA-VTREVIPGSELMTHQERERYRRRLRGAKSPADAQQIQGEHVRQMRERARLRGLRLPE 237
            AADT A V RE+IPGSELMT QERERYR+R+RGAKS A+ ++I+ +HV+QM+ERARLRGLRLP+
Sbjct:   21 AADTTAPVKREIIPGSELMTTQERERYRQRMRGAKSAAEQKRIRDDHVKQMQERARLRGLRLPD 84          
BLAST of mRNA_P-wetherbeei_contig55439.1.1 vs. uniprot
Match: A0A1F4ADL5_9PROT (Uncharacterized protein n=1 Tax=Betaproteobacteria bacterium RIFCSPLOWO2_02_64_14 TaxID=1797482 RepID=A0A1F4ADL5_9PROT)

HSP 1 Score: 72.8 bits (177), Expect = 5.240e-15
Identity = 41/73 (56.16%), Postives = 52/73 (71.23%), Query Frame = 1
Query:   19 GISLPARAEQAADTGAVTREVIPGSELMTHQERERYRRRLRGAKSPADAQQIQGEHVRQMRERARLRGLRLPE 237
            GI+L A  +       + RE+IPGSELMT QERERYR+R+R AKS  +  + + EH +QM+ERARLRGLRL E
Sbjct:    6 GIALAAE-QSGTSRPQMKREIIPGSELMTPQERERYRQRMRSAKSDDERNRYRAEHTKQMQERARLRGLRLAE 77          
BLAST of mRNA_P-wetherbeei_contig55439.1.1 vs. uniprot
Match: A0A3N5WPQ2_9PROT (Uncharacterized protein n=1 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A3N5WPQ2_9PROT)

HSP 1 Score: 70.9 bits (172), Expect = 4.780e-14
Identity = 37/78 (47.44%), Postives = 55/78 (70.51%), Query Frame = 1
Query:    1 IFVMIFGISLPARAEQAADTGA-VTREVIPGSELMTHQERERYRRRLRGAKSPADAQQIQGEHVRQMRERARLRGLRL 231
            I   + G +LPA     A+    V RE+IPGSELMT +ERE YR+R+RGA++P + ++++ EHV+ M ER R+RGL++
Sbjct:   13 ITATVIGGALPAAVAAPAEPAPPVQREIIPGSELMTSREREAYRQRMRGARTPEERERLRAEHVKAMEERGRMRGLQV 90          
BLAST of mRNA_P-wetherbeei_contig55439.1.1 vs. uniprot
Match: UPI000A32465B (hypothetical protein n=2 Tax=Methylocaldum TaxID=73778 RepID=UPI000A32465B)

HSP 1 Score: 65.1 bits (157), Expect = 1.400e-11
Identity = 34/73 (46.58%), Postives = 51/73 (69.86%), Query Frame = 1
Query:   40 AEQAADTGAVTREVIPGSELMTHQERERYRRRLRGAKSPADAQQIQGEHVRQMRERARLRGLRLPEEKPAGEG 258
            A++ +   + T+E I G +LMT QER  YR R+RGAK+  + +QI+ EH  +M+ERA+ RG+ +P+E PAG G
Sbjct:   24 AQERSQQRSQTQEQIYGKQLMTEQERAEYRDRMRGAKTAEEREQIRKEHHERMKERAKERGVTIPDEPPAGRG 96          
BLAST of mRNA_P-wetherbeei_contig55439.1.1 vs. uniprot
Match: UPI000F5BD1E7 (hypothetical protein n=1 Tax=Sulfuriferula multivorans TaxID=1559896 RepID=UPI000F5BD1E7)

HSP 1 Score: 60.1 bits (144), Expect = 1.100e-9
Identity = 34/80 (42.50%), Postives = 53/80 (66.25%), Query Frame = 1
Query:   22 ISLPARAEQAADTG-AVTREVIPGSELMTHQERERYRRRLRGAKSPADAQQIQGEHVRQMRERARLRGLRLPEEKPAGEG 258
            ++  A+A++    G A  +E + GS+LMT QER  YR R+R AK+  + +QI+ EH ++M+ERA+ RG+ LP+  PA  G
Sbjct:   24 VTKQAQAQEPMQQGQARNQEQVYGSQLMTRQERAEYRNRMRNAKTEQEREQIRSEHHKRMQERAKQRGVTLPDSPPARGG 103          
BLAST of mRNA_P-wetherbeei_contig55439.1.1 vs. uniprot
Match: UPI001BB419BA (hypothetical protein n=1 Tax=Ferrigenium kumadai TaxID=1682490 RepID=UPI001BB419BA)

HSP 1 Score: 60.5 bits (145), Expect = 1.100e-9
Identity = 31/62 (50.00%), Postives = 45/62 (72.58%), Query Frame = 1
Query:   73 REVIPGSELMTHQERERYRRRLRGAKSPADAQQIQGEHVRQMRERARLRGLRLPEEKPAGEG 258
            +E I GS++MT QER  Y  R+R AK+  + +QI+ EH  +M+ERA+ RG+ LP+E PAG+G
Sbjct:   43 KERIYGSQMMTRQERAEYHARMRAAKTAEEREQIRKEHHERMKERAKQRGVTLPDEPPAGDG 104          
BLAST of mRNA_P-wetherbeei_contig55439.1.1 vs. uniprot
Match: A0A6F8VB22_9PROT (Uncharacterized protein n=1 Tax=Sulfurimicrobium lacus TaxID=2715678 RepID=A0A6F8VB22_9PROT)

HSP 1 Score: 58.9 bits (141), Expect = 4.550e-9
Identity = 34/76 (44.74%), Postives = 48/76 (63.16%), Query Frame = 1
Query:   31 PARAEQAADTGAVTREVIPGSELMTHQERERYRRRLRGAKSPADAQQIQGEHVRQMRERARLRGLRLPEEKPAGEG 258
            PA A   A      R+ I GS+LMT QER  YR ++R AK+  + +QI+ EH  +M+ERA+ +G+ LP+  PAG G
Sbjct:   26 PAAAPAPAQQQMQPRDQIYGSQLMTTQERMEYRTKMRAAKTQQEREQIRAEHHARMQERAKEKGMTLPDMPPAGMG 101          
BLAST of mRNA_P-wetherbeei_contig55439.1.1 vs. uniprot
Match: Q1K235_DESA6 (Uncharacterized protein n=1 Tax=Desulfuromonas acetoxidans (strain DSM 684 / 11070) TaxID=281689 RepID=Q1K235_DESA6)

HSP 1 Score: 58.5 bits (140), Expect = 5.440e-9
Identity = 34/70 (48.57%), Postives = 46/70 (65.71%), Query Frame = 1
Query:   40 AEQAADTGAVTREVIPGSELMTHQERERYRRRLRGAKSPADAQQIQGEHVRQMRERARLRGLRLPEEKPA 249
            A+ AA T    ++ I GS+LMT QER  +R R+R AK+    Q+I+ EH   M+ERA+ RG+ LPEE PA
Sbjct:   29 AQDAAQTQMQQQQKIYGSQLMTQQERMEFRARMRNAKTAEQRQKIRQEHHATMQERAKQRGVSLPEEPPA 98          
BLAST of mRNA_P-wetherbeei_contig55439.1.1 vs. uniprot
Match: A0A1G3TGB2_9PROT (Uncharacterized protein n=1 Tax=Sulfurimonas sp. RIFCSPLOWO2_12_36_12 TaxID=1802253 RepID=A0A1G3TGB2_9PROT)

HSP 1 Score: 58.2 bits (139), Expect = 7.200e-9
Identity = 32/84 (38.10%), Postives = 51/84 (60.71%), Query Frame = 1
Query:    1 IFVMIFGISLPARAEQAADTGAVTREVIPGSELMTHQERERYRRRLRGAKSPADAQQIQGEHVRQMRERARLRGLRLPEEKPAG 252
            +F+    +S   + +    T    +E + GS+LMT QER  +R +LR AK+  + +QI+ EH   M+ERA+ +G+ LP+E PAG
Sbjct:   15 LFLSTGSLSAADQDKSQKTTQTQEQEQVYGSQLMTQQERTEHRNKLRAAKTAQEREQIRNEHHALMKERAKAKGITLPDEPPAG 98          
BLAST of mRNA_P-wetherbeei_contig55439.1.1 vs. uniprot
Match: UPI0004DF0B8D (hypothetical protein n=1 Tax=Thiomonas sp. FB-Cd TaxID=1158292 RepID=UPI0004DF0B8D)

HSP 1 Score: 57.8 bits (138), Expect = 9.330e-9
Identity = 31/58 (53.45%), Postives = 41/58 (70.69%), Query Frame = 1
Query:   76 EVIPGSELMTHQERERYRRRLRGAKSPADAQQIQGEHVRQMRERARLRGLRLPEEKPA 249
            E I GS+LMT QER  YR RLR AK+  + + ++ EH +QM+ERAR RG+ LP+  PA
Sbjct:   35 ETIYGSQLMTRQERNEYRARLREAKTVREREHLRAEHHKQMQERARERGVTLPDNPPA 92          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig55439.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7C2YD93_9PROT1.270e-1971.88Uncharacterized protein n=1 Tax=Betaproteobacteria... [more]
A0A1F4ADL5_9PROT5.240e-1556.16Uncharacterized protein n=1 Tax=Betaproteobacteria... [more]
A0A3N5WPQ2_9PROT4.780e-1447.44Uncharacterized protein n=1 Tax=Betaproteobacteria... [more]
UPI000A32465B1.400e-1146.58hypothetical protein n=2 Tax=Methylocaldum TaxID=7... [more]
UPI000F5BD1E71.100e-942.50hypothetical protein n=1 Tax=Sulfuriferula multivo... [more]
UPI001BB419BA1.100e-950.00hypothetical protein n=1 Tax=Ferrigenium kumadai T... [more]
A0A6F8VB22_9PROT4.550e-944.74Uncharacterized protein n=1 Tax=Sulfurimicrobium l... [more]
Q1K235_DESA65.440e-948.57Uncharacterized protein n=1 Tax=Desulfuromonas ace... [more]
A0A1G3TGB2_9PROT7.200e-938.10Uncharacterized protein n=1 Tax=Sulfurimonas sp. R... [more]
UPI0004DF0B8D9.330e-953.45hypothetical protein n=1 Tax=Thiomonas sp. FB-Cd T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig55439contigP-wetherbeei_contig55439:64..330 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog1454004.AW11_02883
Model size267
Max annot lvl28216|Betaproteobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue5.5e-08
EggNOG OGs2BW01@1|root,32RUH@2|Bacteria,1N665@1224|Proteobacteria,2VVCA@28216|Betaproteobacteria
Cds size258
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186825.9637985-UTR-P-wetherbeei_contig55439:63..721683186825.9637985-UTR-P-wetherbeei_contig55439:63..72Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig55439 64..72 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186825.9760017-CDS-P-wetherbeei_contig55439:72..3301683186825.9760017-CDS-P-wetherbeei_contig55439:72..330Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig55439 73..330 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig55439.1.1prot_P-wetherbeei_contig55439.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig55439 73..330 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig55439.1.1

>prot_P-wetherbeei_contig55439.1.1 ID=prot_P-wetherbeei_contig55439.1.1|Name=mRNA_P-wetherbeei_contig55439.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=86bp
MIFGISLPARAEQAADTGAVTREVIPGSELMTHQERERYRRRLRGAKSPA
DAQQIQGEHVRQMRERARLRGLRLPEEKPAGEGAR*
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mRNA from alignment at P-wetherbeei_contig55439:64..330+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig55439.1.1 ID=mRNA_P-wetherbeei_contig55439.1.1|Name=mRNA_P-wetherbeei_contig55439.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=267bp|location=Sequence derived from alignment at P-wetherbeei_contig55439:64..330+ (Phaeothamnion wetherbeei SAG_119_79)
ATTTTTGTGATGATCTTCGGCATCAGCCTGCCTGCACGGGCTGAACAGGC AGCCGATACCGGTGCGGTCACCCGGGAGGTCATTCCCGGTTCTGAATTGA TGACGCATCAGGAACGCGAACGCTATCGCCGGCGTCTCCGCGGCGCCAAA TCACCTGCGGACGCACAGCAGATCCAGGGCGAACACGTCCGGCAAATGCG GGAGCGAGCCCGTTTGCGAGGCTTGCGCTTGCCCGAGGAAAAACCGGCCG GGGAAGGTGCCAGGTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig55439:64..330+

>mRNA_P-wetherbeei_contig55439.1.1 ID=mRNA_P-wetherbeei_contig55439.1.1|Name=mRNA_P-wetherbeei_contig55439.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=258bp|location=Sequence derived from alignment at P-wetherbeei_contig55439:64..330+ (Phaeothamnion wetherbeei SAG_119_79)
ATGATCTTCGGCATCAGCCTGCCTGCACGGGCTGAACAGGCAGCCGATAC
CGGTGCGGTCACCCGGGAGGTCATTCCCGGTTCTGAATTGATGACGCATC
AGGAACGCGAACGCTATCGCCGGCGTCTCCGCGGCGCCAAATCACCTGCG
GACGCACAGCAGATCCAGGGCGAACACGTCCGGCAAATGCGGGAGCGAGC
CCGTTTGCGAGGCTTGCGCTTGCCCGAGGAAAAACCGGCCGGGGAAGGTG
CCAGGTGA
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