mRNA_P-wetherbeei_contig55423.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig55423.1.1
Unique NamemRNA_P-wetherbeei_contig55423.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig55423.1.1 vs. uniprot
Match: A0A349MRH4_9PROT (30S ribosomal protein S21 n=12 Tax=root TaxID=1 RepID=A0A349MRH4_9PROT)

HSP 1 Score: 90.1 bits (222), Expect = 1.000e-22
Identity = 45/49 (91.84%), Postives = 47/49 (95.92%), Query Frame = 1 
Query:    1 MPSVRVKENEPFEAAMRRFKRTIEKTGLLTELRAREFYEKPTSERKRKH 147
            MP VR+KENEPFE AMRRFKRT+EKTGLLTELRAREFYEKPTSERKRKH
Sbjct:    1 MPIVRLKENEPFEVAMRRFKRTVEKTGLLTELRAREFYEKPTSERKRKH 49
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BLAST of mRNA_P-wetherbeei_contig55423.1.1 vs. uniprot
Match: RS21_BORBR (30S ribosomal protein S21 n=61 Tax=Alcaligenaceae TaxID=506 RepID=RS21_BORBR)

HSP 1 Score: 88.6 bits (218), Expect = 4.090e-22
Identity = 44/49 (89.80%), Postives = 48/49 (97.96%), Query Frame = 1 
Query:    1 MPSVRVKENEPFEAAMRRFKRTIEKTGLLTELRAREFYEKPTSERKRKH 147
            MP VR+KENEPFEAA+RRFKRTIEKTGLLTELR+REFYEKPT+ERKRKH
Sbjct:    1 MPIVRLKENEPFEAALRRFKRTIEKTGLLTELRSREFYEKPTAERKRKH 49
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BLAST of mRNA_P-wetherbeei_contig55423.1.1 vs. uniprot
Match: RS21_BORA1 (30S ribosomal protein S21 n=112 Tax=root TaxID=1 RepID=RS21_BORA1)

HSP 1 Score: 88.6 bits (218), Expect = 4.090e-22
Identity = 44/49 (89.80%), Postives = 48/49 (97.96%), Query Frame = 1 
Query:    1 MPSVRVKENEPFEAAMRRFKRTIEKTGLLTELRAREFYEKPTSERKRKH 147
            MP VR+KENEPFEAA+RRFKRTIEKTGLLTELR+REFYEKPT+ERKRKH
Sbjct:    1 MPIVRLKENEPFEAALRRFKRTIEKTGLLTELRSREFYEKPTAERKRKH 49
[Close]
BLAST of mRNA_P-wetherbeei_contig55423.1.1 vs. uniprot
Match: UPI0009710129 (30S ribosomal protein S21 n=1 Tax=Alcaligenes xylosoxydans xylosoxydans TaxID=85698 RepID=UPI0009710129)

HSP 1 Score: 88.6 bits (218), Expect = 5.070e-22
Identity = 44/49 (89.80%), Postives = 48/49 (97.96%), Query Frame = 1 
Query:    1 MPSVRVKENEPFEAAMRRFKRTIEKTGLLTELRAREFYEKPTSERKRKH 147
            MP VR+KENEPFEAA+RRFKRTIEKTGLLTELR+REFYEKPT+ERKRKH
Sbjct:    1 MPIVRLKENEPFEAALRRFKRTIEKTGLLTELRSREFYEKPTAERKRKH 49
[Close]
BLAST of mRNA_P-wetherbeei_contig55423.1.1 vs. uniprot
Match: RS21_LARHH (30S ribosomal protein S21 n=22 Tax=Betaproteobacteria TaxID=28216 RepID=RS21_LARHH)

HSP 1 Score: 88.2 bits (217), Expect = 5.820e-22
Identity = 45/48 (93.75%), Postives = 47/48 (97.92%), Query Frame = 1 
Query:    1 MPSVRVKENEPFEAAMRRFKRTIEKTGLLTELRAREFYEKPTSERKRK 144
            MPSVRVKENEPFE AMRRFKR+IEKTGLLTELRAREFYEKPT+ERKRK
Sbjct:    1 MPSVRVKENEPFEVAMRRFKRSIEKTGLLTELRAREFYEKPTTERKRK 48
[Close]
BLAST of mRNA_P-wetherbeei_contig55423.1.1 vs. uniprot
Match: RS21_CHRVO (30S ribosomal protein S21 n=42 Tax=Proteobacteria TaxID=1224 RepID=RS21_CHRVO)

HSP 1 Score: 87.8 bits (216), Expect = 8.270e-22
Identity = 42/49 (85.71%), Postives = 47/49 (95.92%), Query Frame = 1 
Query:    1 MPSVRVKENEPFEAAMRRFKRTIEKTGLLTELRAREFYEKPTSERKRKH 147
            MP++RVKENEPFE A+RRFKR +EKTGLLTELRAREFYEKPT+ERKRKH
Sbjct:    1 MPTIRVKENEPFEVALRRFKRAVEKTGLLTELRAREFYEKPTTERKRKH 49
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BLAST of mRNA_P-wetherbeei_contig55423.1.1 vs. uniprot
Match: A0A7C6PDM0_9RHOO (30S ribosomal protein S21 n=1 Tax=Rhodocyclaceae bacterium TaxID=1898103 RepID=A0A7C6PDM0_9RHOO)

HSP 1 Score: 87.8 bits (216), Expect = 8.270e-22
Identity = 43/48 (89.58%), Postives = 48/48 (100.00%), Query Frame = 1 
Query:    1 MPSVRVKENEPFEAAMRRFKRTIEKTGLLTELRAREFYEKPTSERKRK 144
            MP++RVKENEPFEAA+RRFKRT+EKTGLLTELRAREFYEKPT+ERKRK
Sbjct:    1 MPNIRVKENEPFEAAIRRFKRTVEKTGLLTELRAREFYEKPTAERKRK 48
[Close]
BLAST of mRNA_P-wetherbeei_contig55423.1.1 vs. uniprot
Match: A0A0S8BS34_9PROT (30S ribosomal protein S21 n=3 Tax=unclassified Betaproteobacteria TaxID=33809 RepID=A0A0S8BS34_9PROT)

HSP 1 Score: 87.4 bits (215), Expect = 1.170e-21
Identity = 43/48 (89.58%), Postives = 48/48 (100.00%), Query Frame = 1 
Query:    1 MPSVRVKENEPFEAAMRRFKRTIEKTGLLTELRAREFYEKPTSERKRK 144
            MP+VRVKENEPFEAA+RRFKRT+EKTGLLTELRARE+YEKPT+ERKRK
Sbjct:    1 MPTVRVKENEPFEAALRRFKRTVEKTGLLTELRAREYYEKPTTERKRK 48
[Close]
BLAST of mRNA_P-wetherbeei_contig55423.1.1 vs. uniprot
Match: A0A345D9L2_9BURK (30S ribosomal protein S21 n=2 Tax=Burkholderiaceae TaxID=119060 RepID=A0A345D9L2_9BURK)

HSP 1 Score: 87.0 bits (214), Expect = 1.670e-21
Identity = 43/49 (87.76%), Postives = 46/49 (93.88%), Query Frame = 1 
Query:    1 MPSVRVKENEPFEAAMRRFKRTIEKTGLLTELRAREFYEKPTSERKRKH 147
            MP +RVKENEPFE AMRRFKR IEKTGLLT+LRAREFYEKPT+ERKRKH
Sbjct:    1 MPLIRVKENEPFEVAMRRFKRAIEKTGLLTDLRAREFYEKPTTERKRKH 49
[Close]
BLAST of mRNA_P-wetherbeei_contig55423.1.1 vs. uniprot
Match: A0A1F3ZSQ5_9PROT (30S ribosomal protein S21 n=10 Tax=unclassified Betaproteobacteria TaxID=33809 RepID=A0A1F3ZSQ5_9PROT)

HSP 1 Score: 87.0 bits (214), Expect = 1.670e-21
Identity = 43/48 (89.58%), Postives = 47/48 (97.92%), Query Frame = 1 
Query:    1 MPSVRVKENEPFEAAMRRFKRTIEKTGLLTELRAREFYEKPTSERKRK 144
            MP+VRVKENEPFE A+RRFKRT+EKTGLLTELRARE+YEKPTSERKRK
Sbjct:    1 MPTVRVKENEPFEVALRRFKRTVEKTGLLTELRAREYYEKPTSERKRK 48
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig55423.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A349MRH4_9PROT1.000e-2291.8430S ribosomal protein S21 n=12 Tax=root TaxID=1 Re... [more]
RS21_BORBR4.090e-2289.8030S ribosomal protein S21 n=61 Tax=Alcaligenaceae ... [more]
RS21_BORA14.090e-2289.8030S ribosomal protein S21 n=112 Tax=root TaxID=1 R... [more]
UPI00097101295.070e-2289.8030S ribosomal protein S21 n=1 Tax=Alcaligenes xylo... [more]
RS21_LARHH5.820e-2293.7530S ribosomal protein S21 n=22 Tax=Betaproteobacte... [more]
RS21_CHRVO8.270e-2285.7130S ribosomal protein S21 n=42 Tax=Proteobacteria ... [more]
A0A7C6PDM0_9RHOO8.270e-2289.5830S ribosomal protein S21 n=1 Tax=Rhodocyclaceae b... [more]
A0A0S8BS34_9PROT1.170e-2189.5830S ribosomal protein S21 n=3 Tax=unclassified Bet... [more]
A0A345D9L2_9BURK1.670e-2187.7630S ribosomal protein S21 n=2 Tax=Burkholderiaceae... [more]
A0A1F3ZSQ5_9PROT1.670e-2189.5830S ribosomal protein S21 n=10 Tax=unclassified Be... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig55423contigP-wetherbeei_contig55423:1..147 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog1072685.IX83_04430
Preferred namerpsU
PFAMsRibosomal_S21
Model size147
Max annot lvl28216|Betaproteobacteria
KEGG koko:K02970
KEGG Pathwayko03010,map03010
KEGG ModuleM00178
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Evalue8.15e-24
EggNOG OGsCOG0828@1|root,COG0828@2|Bacteria,1MZCC@1224|Proteobacteria,2VTZ4@28216|Betaproteobacteria,3T4HS@506|Alcaligenaceae
DescriptionBelongs to the bacterial ribosomal protein bS21 family
Cds size147
COG categoryJ
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186825.8552845-CDS-P-wetherbeei_contig55423:0..1471683186825.8552845-CDS-P-wetherbeei_contig55423:0..147Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig55423 1..147 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig55423.1.1prot_P-wetherbeei_contig55423.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig55423 1..147 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig55423.1.1

>prot_P-wetherbeei_contig55423.1.1 ID=prot_P-wetherbeei_contig55423.1.1|Name=mRNA_P-wetherbeei_contig55423.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=49bp
MPSVRVKENEPFEAAMRRFKRTIEKTGLLTELRAREFYEKPTSERKRKH
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mRNA from alignment at P-wetherbeei_contig55423:1..147-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig55423.1.1 ID=mRNA_P-wetherbeei_contig55423.1.1|Name=mRNA_P-wetherbeei_contig55423.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=147bp|location=Sequence derived from alignment at P-wetherbeei_contig55423:1..147- (Phaeothamnion wetherbeei SAG_119_79)
ATGCCCAGCGTTCGCGTCAAGGAAAACGAGCCGTTCGAGGCCGCCATGCG
CCGTTTCAAGCGCACCATCGAAAAGACCGGCCTTTTGACCGAATTGCGGG
CGCGCGAGTTTTATGAGAAGCCCACTTCCGAGCGCAAGCGCAAGCAT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig55423:1..147-

>mRNA_P-wetherbeei_contig55423.1.1 ID=mRNA_P-wetherbeei_contig55423.1.1|Name=mRNA_P-wetherbeei_contig55423.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=147bp|location=Sequence derived from alignment at P-wetherbeei_contig55423:1..147- (Phaeothamnion wetherbeei SAG_119_79)
ATGCCCAGCGTTCGCGTCAAGGAAAACGAGCCGTTCGAGGCCGCCATGCG
CCGTTTCAAGCGCACCATCGAAAAGACCGGCCTTTTGACCGAATTGCGGG
CGCGCGAGTTTTATGAGAAGCCCACTTCCGAGCGCAAGCGCAAGCAT
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