mRNA_P-wetherbeei_contig5542.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig5542.1.1
Unique NamemRNA_P-wetherbeei_contig5542.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5542.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig5542contigP-wetherbeei_contig5542:160..3019 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size2620
Hectar predicted targeting categoryother localisation
Exons3
Cds size1563
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186825.7381291-UTR-P-wetherbeei_contig5542:159..9481683186825.7381291-UTR-P-wetherbeei_contig5542:159..948Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig5542 160..948 -
1683186825.780537-UTR-P-wetherbeei_contig5542:2751..30191683186825.780537-UTR-P-wetherbeei_contig5542:2751..3019Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig5542 2752..3019 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186825.751611-CDS-P-wetherbeei_contig5542:948..15211683186825.751611-CDS-P-wetherbeei_contig5542:948..1521Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5542 949..1521 -
1683186825.7611208-CDS-P-wetherbeei_contig5542:1737..23561683186825.7611208-CDS-P-wetherbeei_contig5542:1737..2356Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5542 1738..2356 -
1683186825.7705374-CDS-P-wetherbeei_contig5542:2380..27511683186825.7705374-CDS-P-wetherbeei_contig5542:2380..2751Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5542 2381..2751 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig5542.1.1prot_P-wetherbeei_contig5542.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig5542 949..2751 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig5542.1.1

>prot_P-wetherbeei_contig5542.1.1 ID=prot_P-wetherbeei_contig5542.1.1|Name=mRNA_P-wetherbeei_contig5542.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=521bp
MKEQGEGEKRTCTRCRGAKVRCERVLQGATCGRCVRLGLECEPQTRKRGR
PKTRPGGTNEDPERLSSRRTQHPELGGGRVSLRVKRRRDVSSSPSTPLSL
SEDSDGNNSEDSESVSPPPPPPPPCAKRPITAAPPKRRQNHKEEEREEHD
RAPAMKEDRPVDGFVPASPCPPARVVPATSAALNYPPPSPVDFTYYDAIF
FPCNVKGAAAAGAAVPIPYQQHQHHQDGGGRRSVPATRHLGQGGGGVMAT
AAVPPPPRATTVNALAAERLRHAGRDQLKHANGRFAAGAAADGHGNGSVG
GGSGGRTWPIGIEWHEDERHGARPVPALLQEVNWRGDGIGGVNAGITIGR
YSNAPSRPSFPQSSAYVQTGASGLVVASRAACLPPQGHSVQPPPPTYLRE
KSFASELLNAGYVPPLAQHMHAYSRGDQLGVTGGNNGYSRDGGYGNATGG
GYGCGGGHSGGCGPQRQLHQQQPHRHRQASPAMALVDANGAVMPADALTA
WNLLDSLGHLDFAGLAASTG*
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mRNA from alignment at P-wetherbeei_contig5542:160..3019-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig5542.1.1 ID=mRNA_P-wetherbeei_contig5542.1.1|Name=mRNA_P-wetherbeei_contig5542.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2860bp|location=Sequence derived from alignment at P-wetherbeei_contig5542:160..3019- (Phaeothamnion wetherbeei SAG_119_79)
CGATTTGCCATTCAATTGCGGTTGTCATTTTGTGTCACTACAGATGGTTG
GAGTGATTGGCCTACCACCCAGTGTACACATCACTTGCTGATAACGTAAA
AAAAGGCCGATCTGTGTGTAGTGTCGAAGCGGCGTTATTCAAAATCGGAA
CCAAATGAGGAATGAGCCTTTTCCTCATTCTTTTCCCCTTCACACACCTG
GATCATTAGCTTTGGCTGGTCATCACGTTCTCAAACTTTTGCCTGTCCCG
GTTGTTTGTGGTTGATCGATGAAGGAGCAGGGAGAGGGCGAAAAGAGGAC
CTGCACGCGTTGCCGCGGTGCGAAAGTGCGCTGCGAGAGAGTCCTTCAGG
GAGCAACTTGCGGGAGGTGCGTGCGGCTCGGCCTGGAGTGTGAGCCTCAA
ACGAGAAAGAGAGGGAGGCCCAAGACTCGCCCCGGCGGCACCAACGAGGA
TCCAGAGCGCCTCAGCTCTCGACGCACGCAGCATCCGGAGCTCGGTGGCG
GCCGCGTGTCACTGCGCGTCAAGCGGCGACGCGACGTGTCCAGTTCGCCA
TCGACGCCCCTGTCCCTTTCAGAAGACTCTGACGGCAACAACAGCGAGGA
CTCCGAGAGCGTCTCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGC
CGCCGCCGTCGAGGTGTGCGAAACGGCCCATCACAGCGGCTCCGCCGAAG
CGACGGCAGAACCACAAAGAGGAGGAGAGAGAAGAGCATGACAGAGCCCC
GGCAATGAAGGAGGACCGTCCTGTGGATGGTTTTGTTCCCGCGTCTCCGT
GTCCGCCGGCCAGGGTCGTCCCCGCCACGTCTGCTGCGCTGAACTACCCG
CCGCCGTCGCCGGTCGACTTTACATATTACGACGCGATTTTCTTCCCCTG
CAACGTCAAGGGGGCAGCGGCGGCGGGCGCCGCCGTGCCTATTCCGTACC
AGCAGCACCAGCACCATCAAGACGGCGGCGGACGGAGGTCTGTCCCCGCC
ACCCGGCACCTTGGCCAGGGCGGTGGCGGCGTCATGGCGACCGCAGCCGT
GCCGCCGCCGCCGCGCGCCACTACCGTCAACGCACTGGCGGCGGAACGGC
TTCGACACGCCGGGCGGGACCAGCTGAAGCATGCAAACGGACGCTTCGCC
GCAGGCGCCGCCGCCGACGGCCACGGAAACGGCAGTGTTGGCGGTGGCAG
TGGTGGCCGGACGTGGCCCATAGGCATCGAATGGCACGAAGACGAGCGAC
ACGGCGCGCGCCCCGTTCCGGCACTGCTGCAGGTAACGTTTGTACGCCGG
TCCGATGCAATCCCGGTTCTTTTCTAGCTGGCCGTTTGTGCCGTTTTGTG
GGCTCGTAGCTGCTGTCCGCCCCACAAACAGAATTTACAGCTCTCGAGCG
ACACATCGTGGCCAGGAACCGCAACAAGTTCGACCATCTAAGCATACCGC
TTTTCTACCGCTCCCGTGTCCTGCACGCGACCGAATTCCCTGCCGCAGGA
GGTGAATTGGAGGGGAGACGGCATCGGCGGTGTCAACGCCGGCATAACGA
TCGGTCGCTACAGTAACGCTCCCTCTCGCCCTTCCTTCCCGCAGTCATCC
GCCTACGTGCAGACGGGCGCGTCGGGTCTCGTCGTGGCCTCCCGCGCCGC
CTGCCTGCCGCCGCAAGGCCATTCTGTGCAGCCGCCGCCGCCGACCTACC
TTCGAGAGAAGAGCTTTGCGTCGGAGCTCTTGAACGCCGGCTACGTGCCG
CCGCTGGCGCAGCACATGCATGCCTACAGCCGAGGGGACCAGCTCGGCGT
CACCGGTGGCAACAATGGCTACAGCAGGGACGGTGGCTACGGCAATGCTA
CCGGCGGCGGTTACGGCTGCGGCGGCGGTCACAGCGGCGGTTGCGGGCCG
CAGCGGCAGTTGCACCAGCAGCAGCCACATCGCCACCGTCAGGCGTCGCC
GGCGATGGCGCTGGTGGACGCCAATGGCGCGGTGATGCCTGCCGATGCGC
TGACAGCGTGGAACCTGCTTGACTCGCTGGGCCACCTCGATTTTGCCGGG
CTGGCTGCCTCCACCGGCTGAAGCAAGCGGCACGGAGGAGGAATAAAGAA
GCAAGCAGCTCGTCCCGCTTGGGTGAAAAGCCGCTTAGGTTTGCCTTTGT
CCGGCTCCAGCCGGGTTTTTCCCCTCTCCGGCAGCGGCGGCGACGGCGGC
GGGGCAGCGGCGGCGGCGGTCGCGGCCTGCTGTTTTAGCCCGCCGCTCCC
GTGTCTGGCACGCGTGCCACCGCTCGGCCAGCGGCGACAAGGCGGCTGCT
GCTGCGTCGTTTGCGGCAGAAGTTTTCAAAGACAACACATGTGCACGCAG
AGTTTCAGACACGAGTGCTATGCCTCTTTCTGCCTGTTCCTTTCCTTTCT
ACTTAAGAAATCATCCGGGGTGCACGACTCCACAGAGTGCACAAACACGA
GGCGAGGCGGGCGGCGGCGGCCGGGAAAAATGCAGCGGTACGGCGGCAGG
CAGCTGCAGGAGGACAAGAGGAGGGGACGGGCCCGGGCGGCGGTGGCATT
ACTGGGACGGTCGAATATTTGGGTGGTCAGAGGCGAGCGAGGCGATAATC
CCGCCGGGAGTTAGACTCCCGGCGCTCTTCCCCATAGAGCTTCATTCTCA
TAACGCTGTCGCCTCTGCCGCTGGGACTGCGTGCATCCGTAGCTGCAGCG
GCACGTGAATTGGTCGCAAGAAGCGGAATAAGCGGTGAGGGCCATCCGAC
CGCTATGGTCCGAGCTTGCTGTCGCTTTGCGGCAGCATCATTGTAAGGGC
TAAACAGAAGACTCATAATACAACTTCGTCGAATAATTTTTAAGTATAGC
AATAACCGTA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig5542:160..3019-

>mRNA_P-wetherbeei_contig5542.1.1 ID=mRNA_P-wetherbeei_contig5542.1.1|Name=mRNA_P-wetherbeei_contig5542.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1563bp|location=Sequence derived from alignment at P-wetherbeei_contig5542:160..3019- (Phaeothamnion wetherbeei SAG_119_79)
ATGAAGGAGCAGGGAGAGGGCGAAAAGAGGACCTGCACGCGTTGCCGCGG
TGCGAAAGTGCGCTGCGAGAGAGTCCTTCAGGGAGCAACTTGCGGGAGGT
GCGTGCGGCTCGGCCTGGAGTGTGAGCCTCAAACGAGAAAGAGAGGGAGG
CCCAAGACTCGCCCCGGCGGCACCAACGAGGATCCAGAGCGCCTCAGCTC
TCGACGCACGCAGCATCCGGAGCTCGGTGGCGGCCGCGTGTCACTGCGCG
TCAAGCGGCGACGCGACGTGTCCAGTTCGCCATCGACGCCCCTGTCCCTT
TCAGAAGACTCTGACGGCAACAACAGCGAGGACTCCGAGAGCGTCTCGCC
GCCGCCGCCGCCGCCGCCGCCGTGTGCGAAACGGCCCATCACAGCGGCTC
CGCCGAAGCGACGGCAGAACCACAAAGAGGAGGAGAGAGAAGAGCATGAC
AGAGCCCCGGCAATGAAGGAGGACCGTCCTGTGGATGGTTTTGTTCCCGC
GTCTCCGTGTCCGCCGGCCAGGGTCGTCCCCGCCACGTCTGCTGCGCTGA
ACTACCCGCCGCCGTCGCCGGTCGACTTTACATATTACGACGCGATTTTC
TTCCCCTGCAACGTCAAGGGGGCAGCGGCGGCGGGCGCCGCCGTGCCTAT
TCCGTACCAGCAGCACCAGCACCATCAAGACGGCGGCGGACGGAGGTCTG
TCCCCGCCACCCGGCACCTTGGCCAGGGCGGTGGCGGCGTCATGGCGACC
GCAGCCGTGCCGCCGCCGCCGCGCGCCACTACCGTCAACGCACTGGCGGC
GGAACGGCTTCGACACGCCGGGCGGGACCAGCTGAAGCATGCAAACGGAC
GCTTCGCCGCAGGCGCCGCCGCCGACGGCCACGGAAACGGCAGTGTTGGC
GGTGGCAGTGGTGGCCGGACGTGGCCCATAGGCATCGAATGGCACGAAGA
CGAGCGACACGGCGCGCGCCCCGTTCCGGCACTGCTGCAGGAGGTGAATT
GGAGGGGAGACGGCATCGGCGGTGTCAACGCCGGCATAACGATCGGTCGC
TACAGTAACGCTCCCTCTCGCCCTTCCTTCCCGCAGTCATCCGCCTACGT
GCAGACGGGCGCGTCGGGTCTCGTCGTGGCCTCCCGCGCCGCCTGCCTGC
CGCCGCAAGGCCATTCTGTGCAGCCGCCGCCGCCGACCTACCTTCGAGAG
AAGAGCTTTGCGTCGGAGCTCTTGAACGCCGGCTACGTGCCGCCGCTGGC
GCAGCACATGCATGCCTACAGCCGAGGGGACCAGCTCGGCGTCACCGGTG
GCAACAATGGCTACAGCAGGGACGGTGGCTACGGCAATGCTACCGGCGGC
GGTTACGGCTGCGGCGGCGGTCACAGCGGCGGTTGCGGGCCGCAGCGGCA
GTTGCACCAGCAGCAGCCACATCGCCACCGTCAGGCGTCGCCGGCGATGG
CGCTGGTGGACGCCAATGGCGCGGTGATGCCTGCCGATGCGCTGACAGCG
TGGAACCTGCTTGACTCGCTGGGCCACCTCGATTTTGCCGGGCTGGCTGC
CTCCACCGGCTGA
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