mRNA_P-wetherbeei_contig55418.3.2 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig55418.3.2
Unique NamemRNA_P-wetherbeei_contig55418.3.2
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig55418.3.2 vs. uniprot
Match: A0A4P7F6Y9_9HYPH (Uncharacterized protein n=1 Tax=Beijerinckiaceae bacterium TaxID=1978229 RepID=A0A4P7F6Y9_9HYPH)

HSP 1 Score: 59.3 bits (142), Expect = 4.620e-10
Identity = 38/56 (67.86%), Postives = 41/56 (73.21%), Query Frame = 1 
Query:    4 KARSVVALSRVPQRRSGFSS-------LAAV-RPLVRIPTDRHTTTGTCEIGQGRK 147
            KARSVVALSRVP R +GF+         AAV RPLVRIP +RHTTTGTCEIGQ  K
Sbjct:   48 KARSVVALSRVP-RLAGFAGSPPAAGPFAAVNRPLVRIPANRHTTTGTCEIGQHGK 102
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BLAST of mRNA_P-wetherbeei_contig55418.3.2 vs. uniprot
Match: UPI0011C0499F (hypothetical protein n=1 Tax=Afipia felis TaxID=1035 RepID=UPI0011C0499F)

HSP 1 Score: 57.4 bits (137), Expect = 9.830e-10
Identity = 25/28 (89.29%), Postives = 26/28 (92.86%), Query Frame = -1 
Query:   55 LPNFARACGRVSIGRYPDKRPDSRQGRE 138
            LPNFARACGRVS+G YPDKRPDSRQG E
Sbjct:   39 LPNFARACGRVSVGGYPDKRPDSRQGDE 66
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BLAST of mRNA_P-wetherbeei_contig55418.3.2 vs. uniprot
Match: A0A431PNF1_9HYPH (Uncharacterized protein n=1 Tax=Hyphomicrobiales bacterium TaxID=1909294 RepID=A0A431PNF1_9HYPH)

HSP 1 Score: 58.2 bits (139), Expect = 4.950e-9
Identity = 33/54 (61.11%), Postives = 38/54 (70.37%), Query Frame = 1 
Query:    1 KKARSVVALSRVPQRRSGFS--------SLAAVRPLVRIPTDRHTTTGTCEIGQ 138
            KKARSVVALSR P  R+ F+        S A  RPLVRIP DRHTTTGTC++G+
Sbjct:   62 KKARSVVALSRDPPLRAEFAGSPPAAGFSRAVDRPLVRIPADRHTTTGTCDLGK 115
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig55418.3.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A4P7F6Y9_9HYPH4.620e-1067.86Uncharacterized protein n=1 Tax=Beijerinckiaceae b... [more]
UPI0011C0499F9.830e-1089.29hypothetical protein n=1 Tax=Afipia felis TaxID=10... [more]
A0A431PNF1_9HYPH4.950e-961.11Uncharacterized protein n=1 Tax=Hyphomicrobiales b... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig55418contigP-wetherbeei_contig55418:252..488 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size150
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size150
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186825.6909368-CDS-P-wetherbeei_contig55418:251..2911683186825.6909368-CDS-P-wetherbeei_contig55418:251..291Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig55418 252..291 +
1683186825.7045755-CDS-P-wetherbeei_contig55418:378..4881683186825.7045755-CDS-P-wetherbeei_contig55418:378..488Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig55418 379..488 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig55418.3.2prot_P-wetherbeei_contig55418.3.2Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig55418 252..488 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig55418.3.2

>prot_P-wetherbeei_contig55418.3.2 ID=prot_P-wetherbeei_contig55418.3.2|Name=mRNA_P-wetherbeei_contig55418.3.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=50bp
KKARSVVALSRVPQRRSGFSSLAAVRPLVRIPTDRHTTTGTCEIGQGRK*
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mRNA from alignment at P-wetherbeei_contig55418:252..488+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig55418.3.2 ID=mRNA_P-wetherbeei_contig55418.3.2|Name=mRNA_P-wetherbeei_contig55418.3.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=237bp|location=Sequence derived from alignment at P-wetherbeei_contig55418:252..488+ (Phaeothamnion wetherbeei SAG_119_79)
AAAAAAGCCCGCTCCGTCGTTGCTTTAAGTCGCGTCCCCCGTTGAGAGCG
GAGTACGCCGGTTTCGCCTCCGGCTGCCGATCACGGTTGCAAGGAGCGAG
GAGCCTTCAAGTGGCGCGTCTCTTGAGAGAGACGCTCGGGCTTCTCTTCC
TTGGCGGCTGTCCGGCCTCTTGTCCGGATACCTACCGATCGACACACGAC
CACAGGCACGTGCGAAATTGGGCAAGGCAGGAAATAA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig55418:252..488+

>mRNA_P-wetherbeei_contig55418.3.2 ID=mRNA_P-wetherbeei_contig55418.3.2|Name=mRNA_P-wetherbeei_contig55418.3.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=150bp|location=Sequence derived from alignment at P-wetherbeei_contig55418:252..488+ (Phaeothamnion wetherbeei SAG_119_79)
AAAAAAGCCCGCTCCGTCGTTGCTTTAAGTCGCGTCCCCCAGAGACGCTC
GGGCTTCTCTTCCTTGGCGGCTGTCCGGCCTCTTGTCCGGATACCTACCG
ATCGACACACGACCACAGGCACGTGCGAAATTGGGCAAGGCAGGAAATAA
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