mRNA_P-wetherbeei_contig55416.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig55416.1.1
Unique NamemRNA_P-wetherbeei_contig55416.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig55416.1.1 vs. uniprot
Match: W3RJT5_9BRAD (Uncharacterized protein n=1 Tax=Afipia sp. P52-10 TaxID=1429916 RepID=W3RJT5_9BRAD)

HSP 1 Score: 60.5 bits (145), Expect = 6.370e-11
Identity = 33/47 (70.21%), Postives = 37/47 (78.72%), Query Frame = 1 
Query:    1 RGKRRP-DSDKAENAQKMTKERERAYKNALKSIPDGKTDNDPWKGAR 138
            RG+RR  ++DK EN QK +KERE AYKNALKSIPD K D DPWK AR
Sbjct:   33 RGQRRAANADKTENTQKASKEREDAYKNALKSIPDAKQDKDPWKDAR 79
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig55416.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
W3RJT5_9BRAD6.370e-1170.21Uncharacterized protein n=1 Tax=Afipia sp. P52-10 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig55416contigP-wetherbeei_contig55416:1..141 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog443598.AUFA01000010_gene254
Model size141
Max annot lvl28211|Alphaproteobacteria
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Evalue4.65e-05
EggNOG OGs2CEKV@1|root,2ZYZ5@2|Bacteria,1N94E@1224|Proteobacteria,2UGY7@28211|Alphaproteobacteria,3K0VK@41294|Bradyrhizobiaceae
Cds size141
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186825.6663878-CDS-P-wetherbeei_contig55416:0..1411683186825.6663878-CDS-P-wetherbeei_contig55416:0..141Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig55416 1..141 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig55416.1.1prot_P-wetherbeei_contig55416.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig55416 1..141 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig55416.1.1

>prot_P-wetherbeei_contig55416.1.1 ID=prot_P-wetherbeei_contig55416.1.1|Name=mRNA_P-wetherbeei_contig55416.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=47bp
RGKRRPDSDKAENAQKMTKERERAYKNALKSIPDGKTDNDPWKGAR*
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mRNA from alignment at P-wetherbeei_contig55416:1..141+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig55416.1.1 ID=mRNA_P-wetherbeei_contig55416.1.1|Name=mRNA_P-wetherbeei_contig55416.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=141bp|location=Sequence derived from alignment at P-wetherbeei_contig55416:1..141+ (Phaeothamnion wetherbeei SAG_119_79)
CGGGGCAAGCGGCGACCTGACTCGGACAAAGCGGAAAACGCCCAGAAAAT
GACGAAAGAGCGCGAACGCGCCTACAAAAACGCGCTCAAGAGCATCCCGG
ACGGCAAGACGGACAACGATCCCTGGAAGGGTGCGCGTTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig55416:1..141+

>mRNA_P-wetherbeei_contig55416.1.1 ID=mRNA_P-wetherbeei_contig55416.1.1|Name=mRNA_P-wetherbeei_contig55416.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=141bp|location=Sequence derived from alignment at P-wetherbeei_contig55416:1..141+ (Phaeothamnion wetherbeei SAG_119_79)
CGGGGCAAGCGGCGACCTGACTCGGACAAAGCGGAAAACGCCCAGAAAAT
GACGAAAGAGCGCGAACGCGCCTACAAAAACGCGCTCAAGAGCATCCCGG
ACGGCAAGACGGACAACGATCCCTGGAAGGGTGCGCGTTGA
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