mRNA_P-wetherbeei_contig55409.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig55409.1.1
Unique NamemRNA_P-wetherbeei_contig55409.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig55409.1.1 vs. uniprot
Match: UPI001A8F218A (terpene cyclase/mutase family protein n=1 Tax=Nocardioides sp. S5 TaxID=2017486 RepID=UPI001A8F218A)

HSP 1 Score: 321 bits (823), Expect = 1.820e-106
Identity = 174/174 (100.00%), Postives = 174/174 (100.00%), Query Frame = 1
Query:    1 HRIRPIRSAAVVLSTVALGAGVLAAPPASADPSPALRAAKAATSTDSTPSTIAAEWLAGELTNGLMVGDGGPDFGLTIDTGMALSTVRGQGDVNVAITTALEARIGEYVGDGTKESYAGPLAKAAAYAKVAKQNPTNYGGVNLITRLEERTANVPADPAAEPQAAAIAGRISDK 522
            HRIRPIRSAAVVLSTVALGAGVLAAPPASADPSPALRAAKAATSTDSTPSTIAAEWLAGELTNGLMVGDGGPDFGLTIDTGMALSTVRGQGDVNVAITTALEARIGEYVGDGTKESYAGPLAKAAAYAKVAKQNPTNYGGVNLITRLEERTANVPADPAAEPQAAAIAGRISDK
Sbjct:    3 HRIRPIRSAAVVLSTVALGAGVLAAPPASADPSPALRAAKAATSTDSTPSTIAAEWLAGELTNGLMVGDGGPDFGLTIDTGMALSTVRGQGDVNVAITTALEARIGEYVGDGTKESYAGPLAKAAAYAKVAKQNPTNYGGVNLITRLEERTANVPADPAAEPQAAAIAGRISDK 176          
BLAST of mRNA_P-wetherbeei_contig55409.1.1 vs. uniprot
Match: A0A6L6ANL7_9ACTN (Uncharacterized protein n=4 Tax=root TaxID=1 RepID=A0A6L6ANL7_9ACTN)

HSP 1 Score: 281 bits (719), Expect = 9.130e-91
Identity = 152/174 (87.36%), Postives = 162/174 (93.10%), Query Frame = 1
Query:    1 HRIRPIRSAAVVLSTVALGAGVLAAPPASADPSPALRAAKAATSTDSTPSTIAAEWLAGELTNGLMVGDGGPDFGLTIDTGMALSTVRGQGDVNVAITTALEARIGEYVGDGTKESYAGPLAKAAAYAKVAKQNPTNYGGVNLITRLEERTANVPADPAAEPQAAAIAGRISDK 522
            HRIRPIRSAAV LSTVALGAG+LAAPPASA+PSPALRAAKA+ STDSTPSTIAA+WLA ELTNGL+VG+ GPDFGLTIDTGMALSTV  QG VN AITTA+EARIGEY+GDGTKESYAGPLAKAA YAKVAKQNP +YGGVNLI RLEERTA+VPADPAAEPQAAAIAGRI DK
Sbjct:    3 HRIRPIRSAAVALSTVALGAGLLAAPPASAEPSPALRAAKASASTDSTPSTIAAQWLADELTNGLIVGENGPDFGLTIDTGMALSTVVDQGAVNAAITTAVEARIGEYIGDGTKESYAGPLAKAAVYAKVAKQNPASYGGVNLIARLEERTADVPADPAAEPQAAAIAGRIFDK 176          
BLAST of mRNA_P-wetherbeei_contig55409.1.1 vs. uniprot
Match: UPI001B3191D8 (terpene cyclase/mutase family protein n=1 Tax=Nocardioides sp. SYSU D00065 TaxID=2817378 RepID=UPI001B3191D8)

HSP 1 Score: 269 bits (688), Expect = 4.260e-86
Identity = 143/174 (82.18%), Postives = 158/174 (90.80%), Query Frame = 1
Query:    1 HRIRPIRSAAVVLSTVALGAGVLAAPPASADPSPALRAAKAATSTDSTPSTIAAEWLAGELTNGLMVGDGGPDFGLTIDTGMALSTVRGQGDVNVAITTALEARIGEYVGDGTKESYAGPLAKAAAYAKVAKQNPTNYGGVNLITRLEERTANVPADPAAEPQAAAIAGRISDK 522
            HRIRPIR+AAV LSTVALGAGVLAAPPASA+P+PALRAAKAAT+TDSTPSTIAAEW+AGEL+NGLM+G  GPDFGLTIDTG+AL+TV GQG    AI  +LE RI EYVGDGTKESYAGPLAKAAA+A+ AK+NPT+YGG+NLI RLEERTANVPADPAAEPQAAA AGRI DK
Sbjct:    3 HRIRPIRTAAVALSTVALGAGVLAAPPASAEPTPALRAAKAATTTDSTPSTIAAEWIAGELSNGLMLGTSGPDFGLTIDTGLALATVAGQGGTVTAINNSLEPRIAEYVGDGTKESYAGPLAKAAAFARTAKKNPTSYGGINLIARLEERTANVPADPAAEPQAAAFAGRIFDK 176          
BLAST of mRNA_P-wetherbeei_contig55409.1.1 vs. uniprot
Match: A0A4Q2S7W5_9ACTN (Uncharacterized protein n=2 Tax=Nocardioides TaxID=1839 RepID=A0A4Q2S7W5_9ACTN)

HSP 1 Score: 262 bits (669), Expect = 3.070e-83
Identity = 141/174 (81.03%), Postives = 155/174 (89.08%), Query Frame = 1
Query:    1 HRIRPIRSAAVVLSTVALGAGVLAAPPASADPSPALRAAKAATSTDSTPSTIAAEWLAGELTNGLMVGDGGPDFGLTIDTGMALSTVRGQGDVNVAITTALEARIGEYVGDGTKESYAGPLAKAAAYAKVAKQNPTNYGGVNLITRLEERTANVPADPAAEPQAAAIAGRISDK 522
            HRIRPIR+AAV LST ALG GVLAAPPASA+PSPALRAAKAA +TDSTPSTIAAEW+A ELTNGL++G  GPDFGLTIDTGMA+STV  QG    AI  ALE RI EYVGDGTKESYAGPLAKAAA+A+ AK+NPT+YGG+NLITRLEERTA+VPADPAA+PQAAAIAGRI DK
Sbjct:    3 HRIRPIRTAAVALSTAALGVGVLAAPPASAEPSPALRAAKAAATTDSTPSTIAAEWIADELTNGLIMGTSGPDFGLTIDTGMAVSTVARQGATVTAINNALEPRIAEYVGDGTKESYAGPLAKAAAFARTAKKNPTSYGGINLITRLEERTADVPADPAAQPQAAAIAGRIFDK 176          
BLAST of mRNA_P-wetherbeei_contig55409.1.1 vs. uniprot
Match: UPI001CCCF517 (hypothetical protein n=1 Tax=Nocardioides lacusdianchii TaxID=2783664 RepID=UPI001CCCF517)

HSP 1 Score: 259 bits (661), Expect = 4.900e-82
Identity = 140/174 (80.46%), Postives = 154/174 (88.51%), Query Frame = 1
Query:    1 HRIRPIRSAAVVLSTVALGAGVLAAPPASADPSPALRAAKAATSTDSTPSTIAAEWLAGELTNGLMVGDGGPDFGLTIDTGMALSTVRGQGDVNVAITTALEARIGEYVGDGTKESYAGPLAKAAAYAKVAKQNPTNYGGVNLITRLEERTANVPADPAAEPQAAAIAGRISDK 522
            HRIRPIRSAAV LSTVALGAG+LAAPPASA+PSPALR+AKAA +TDSTPSTIAAEW+AGEL NGL+    GPDFGLTIDTGMAL+TV  Q     AI  +LE RI EYVGDGTKESYAGPLAKAAA+A+VAK+NPT+YGG+NLITRLEERTA+VPADPAAEPQAAA AGRI DK
Sbjct:    3 HRIRPIRSAAVALSTVALGAGLLAAPPASAEPSPALRSAKAAVNTDSTPSTIAAEWMAGELQNGLVETGSGPDFGLTIDTGMALATVAAQSGTVTAINNSLEPRIAEYVGDGTKESYAGPLAKAAAFARVAKKNPTSYGGINLITRLEERTADVPADPAAEPQAAAFAGRIFDK 176          
BLAST of mRNA_P-wetherbeei_contig55409.1.1 vs. uniprot
Match: A0A2P2C1P8_9ZZZZ (Uncharacterized protein n=1 Tax=metagenome TaxID=256318 RepID=A0A2P2C1P8_9ZZZZ)

HSP 1 Score: 254 bits (648), Expect = 4.400e-80
Identity = 136/174 (78.16%), Postives = 153/174 (87.93%), Query Frame = 1
Query:    1 HRIRPIRSAAVVLSTVALGAGVLAAPPASADPSPALRAAKAATSTDSTPSTIAAEWLAGELTNGLMVGDGGPDFGLTIDTGMALSTVRGQGDVNVAITTALEARIGEYVGDGTKESYAGPLAKAAAYAKVAKQNPTNYGGVNLITRLEERTANVPADPAAEPQAAAIAGRISDK 522
            HRIRPIRSAAV LSTVALGAGVLAAPPASA+P+PALRAAKAA +TDSTPSTIAAEW+AGEL+NGLM+G  GPDFGLTIDTGMALSTV  Q     AI  +LE RI EYVGDGTKESYAGPLAKAAA+A+VA++ PT+YGG+NL+ RLEERTA+ PADP A+PQ AAIAGR+ DK
Sbjct:    3 HRIRPIRSAAVALSTVALGAGVLAAPPASAEPTPALRAAKAAGATDSTPSTIAAEWIAGELSNGLMMGTSGPDFGLTIDTGMALSTVASQAGTVTAINNSLEPRIAEYVGDGTKESYAGPLAKAAAFARVAQKVPTSYGGINLVKRLEERTADAPADPVAKPQEAAIAGRVFDK 176          
BLAST of mRNA_P-wetherbeei_contig55409.1.1 vs. uniprot
Match: A0A4Q2S6D8_9ACTN (Uncharacterized protein n=2 Tax=Nocardioides TaxID=1839 RepID=A0A4Q2S6D8_9ACTN)

HSP 1 Score: 253 bits (645), Expect = 1.240e-79
Identity = 136/174 (78.16%), Postives = 151/174 (86.78%), Query Frame = 1
Query:    1 HRIRPIRSAAVVLSTVALGAGVLAAPPASADPSPALRAAKAATSTDSTPSTIAAEWLAGELTNGLMVGDGGPDFGLTIDTGMALSTVRGQGDVNVAITTALEARIGEYVGDGTKESYAGPLAKAAAYAKVAKQNPTNYGGVNLITRLEERTANVPADPAAEPQAAAIAGRISDK 522
            HR+RPIR+AAV LSTVALGAGVLAAPPA+AD + ALR+AKAA +TDSTPSTIAAEW+AGELTNGL+VGD GPDFGLTIDTGMAL+TV  QG    AI  ALE RI EYVGDGTKESYAGPLAKAA +A+ AK+NP +YGG+NLI RLEERTA+VPADP  EPQAAA AGRI DK
Sbjct:    3 HRLRPIRTAAVALSTVALGAGVLAAPPATADSTSALRSAKAAVNTDSTPSTIAAEWMAGELTNGLVVGDFGPDFGLTIDTGMALATVTSQGATVTAINNALEPRIAEYVGDGTKESYAGPLAKAATFARTAKKNPISYGGINLIARLEERTADVPADPTKEPQAAAFAGRIFDK 176          
BLAST of mRNA_P-wetherbeei_contig55409.1.1 vs. uniprot
Match: UPI001552635C (terpene cyclase/mutase family protein n=1 Tax=Nocardioides sp. zg-1308 TaxID=2736253 RepID=UPI001552635C)

HSP 1 Score: 251 bits (640), Expect = 7.000e-79
Identity = 136/174 (78.16%), Postives = 149/174 (85.63%), Query Frame = 1
Query:    1 HRIRPIRSAAVVLSTVALGAGVLAAPPASADPSPALRAAKAATSTDSTPSTIAAEWLAGELTNGLMVGDGGPDFGLTIDTGMALSTVRGQGDVNVAITTALEARIGEYVGDGTKESYAGPLAKAAAYAKVAKQNPTNYGGVNLITRLEERTANVPADPAAEPQAAAIAGRISDK 522
            HR RPIR+AA+ LST ALG GVLAAPPASADPSPALRAA+AA STDSTPSTIAAEW+AGEL+NGL+    GPDFGLTIDTG+AL+TV  QG    AI  +LE RIGEYVGDGTKESYAG L KAA +A+ AK+NPT+YGGVNLI RLEERTANVPADPAAEPQAAA AGRI DK
Sbjct:    3 HRNRPIRTAALALSTAALGIGVLAAPPASADPSPALRAAQAAASTDSTPSTIAAEWIAGELSNGLITTPQGPDFGLTIDTGLALATVASQGGTVTAINNSLEPRIGEYVGDGTKESYAGALGKAATFARTAKKNPTSYGGVNLIARLEERTANVPADPAAEPQAAAFAGRIFDK 176          
BLAST of mRNA_P-wetherbeei_contig55409.1.1 vs. uniprot
Match: UPI0016427EC6 (hypothetical protein n=1 Tax=Nocardioides sp. zg-1228 TaxID=2763008 RepID=UPI0016427EC6)

HSP 1 Score: 248 bits (634), Expect = 5.570e-78
Identity = 132/174 (75.86%), Postives = 149/174 (85.63%), Query Frame = 1
Query:    1 HRIRPIRSAAVVLSTVALGAGVLAAPPASADPSPALRAAKAATSTDSTPSTIAAEWLAGELTNGLMVGDGGPDFGLTIDTGMALSTVRGQGDVNVAITTALEARIGEYVGDGTKESYAGPLAKAAAYAKVAKQNPTNYGGVNLITRLEERTANVPADPAAEPQAAAIAGRISDK 522
            HRIRP+R+A V LST ALG GVLAAPPASA+P+PALRAAKAA +TDSTPSTIAA+WLAGEL+NGL+VG  GPD GLT+DTG+ LSTV  QG    AI  +LE RI +YVGDGT ESYAGPLAKAA +A  AKQNPT+YGGVNLI RL+ERTA+VPADPAA+PQAAAIAGRI DK
Sbjct:    3 HRIRPVRTALVALSTAALGVGVLAAPPASAEPTPALRAAKAAVNTDSTPSTIAAQWLAGELSNGLIVGQSGPDLGLTVDTGLGLSTVANQGGTITAINNSLEPRIADYVGDGTTESYAGPLAKAAVFAWTAKQNPTSYGGVNLIARLQERTADVPADPAAQPQAAAIAGRIFDK 176          
BLAST of mRNA_P-wetherbeei_contig55409.1.1 vs. uniprot
Match: UPI001B313B84 (terpene cyclase/mutase family protein n=2 Tax=unclassified Nocardioides TaxID=2615069 RepID=UPI001B313B84)

HSP 1 Score: 248 bits (632), Expect = 1.110e-77
Identity = 133/174 (76.44%), Postives = 149/174 (85.63%), Query Frame = 1
Query:    1 HRIRPIRSAAVVLSTVALGAGVLAAPPASADPSPALRAAKAATSTDSTPSTIAAEWLAGELTNGLMVGDGGPDFGLTIDTGMALSTVRGQGDVNVAITTALEARIGEYVGDGTKESYAGPLAKAAAYAKVAKQNPTNYGGVNLITRLEERTANVPADPAAEPQAAAIAGRISDK 522
            H  RP+R+A V L++  LGAGVL A PASA+PSPALR+A+A  +TDSTPSTIAA+WLAGELTNGLM G  GPDFGLTIDTGMALSTV GQG    AI  ALE RIGEYVGDGTKESYAG LAKAAA+A+ AK+NPT+YGG+NLITRLEERTA+VPADPAA+PQAAA AGRI DK
Sbjct:    3 HLNRPLRTATVALTSAVLGAGVLTAAPASAEPSPALRSARALANTDSTPSTIAAQWLAGELTNGLMTGPYGPDFGLTIDTGMALSTVAGQGSTVTAINNALEPRIGEYVGDGTKESYAGALAKAAAFARTAKRNPTSYGGINLITRLEERTADVPADPAAQPQAAAFAGRIFDK 176          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig55409.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI001A8F218A1.820e-106100.00terpene cyclase/mutase family protein n=1 Tax=Noca... [more]
A0A6L6ANL7_9ACTN9.130e-9187.36Uncharacterized protein n=4 Tax=root TaxID=1 RepID... [more]
UPI001B3191D84.260e-8682.18terpene cyclase/mutase family protein n=1 Tax=Noca... [more]
A0A4Q2S7W5_9ACTN3.070e-8381.03Uncharacterized protein n=2 Tax=Nocardioides TaxID... [more]
UPI001CCCF5174.900e-8280.46hypothetical protein n=1 Tax=Nocardioides lacusdia... [more]
A0A2P2C1P8_9ZZZZ4.400e-8078.16Uncharacterized protein n=1 Tax=metagenome TaxID=2... [more]
A0A4Q2S6D8_9ACTN1.240e-7978.16Uncharacterized protein n=2 Tax=Nocardioides TaxID... [more]
UPI001552635C7.000e-7978.16terpene cyclase/mutase family protein n=1 Tax=Noca... [more]
UPI0016427EC65.570e-7875.86hypothetical protein n=1 Tax=Nocardioides sp. zg-1... [more]
UPI001B313B841.110e-7776.44terpene cyclase/mutase family protein n=2 Tax=uncl... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig55409contigP-wetherbeei_contig55409:2..523 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog110319.CF8_2962
Model size522
Max annot lvl201174|Actinobacteria
Hectar predicted targeting categorysignal peptide
Exons1
Evalue3.73e-23
EggNOG OGs2DRY3@1|root,33DMR@2|Bacteria,2I57G@201174|Actinobacteria,4DWY7@85009|Propionibacteriales
Cds size522
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186825.554784-CDS-P-wetherbeei_contig55409:1..5231683186825.554784-CDS-P-wetherbeei_contig55409:1..523Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig55409 2..523 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig55409.1.1prot_P-wetherbeei_contig55409.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig55409 2..523 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig55409.1.1

>prot_P-wetherbeei_contig55409.1.1 ID=prot_P-wetherbeei_contig55409.1.1|Name=mRNA_P-wetherbeei_contig55409.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=174bp
HRIRPIRSAAVVLSTVALGAGVLAAPPASADPSPALRAAKAATSTDSTPS
TIAAEWLAGELTNGLMVGDGGPDFGLTIDTGMALSTVRGQGDVNVAITTA
LEARIGEYVGDGTKESYAGPLAKAAAYAKVAKQNPTNYGGVNLITRLEER
TANVPADPAAEPQAAAIAGRISDK
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mRNA from alignment at P-wetherbeei_contig55409:2..523-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig55409.1.1 ID=mRNA_P-wetherbeei_contig55409.1.1|Name=mRNA_P-wetherbeei_contig55409.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=522bp|location=Sequence derived from alignment at P-wetherbeei_contig55409:2..523- (Phaeothamnion wetherbeei SAG_119_79)
CATCGCATTCGACCCATCCGATCGGCAGCGGTCGTCCTGTCGACCGTCGC CCTCGGGGCAGGCGTGCTCGCCGCCCCGCCGGCCTCCGCCGACCCGTCGC CCGCCCTGCGGGCGGCCAAGGCCGCGACCTCCACGGACAGCACGCCGTCC ACGATCGCCGCCGAGTGGCTGGCCGGCGAGCTCACGAACGGCCTCATGGT CGGCGACGGCGGCCCCGACTTCGGTCTCACGATCGACACCGGCATGGCCC TGTCGACGGTCCGCGGCCAGGGTGACGTCAACGTGGCGATCACCACGGCC CTCGAAGCCCGCATCGGCGAGTACGTCGGCGACGGCACCAAGGAGTCCTA CGCCGGGCCGCTGGCCAAGGCCGCCGCCTACGCCAAGGTGGCGAAGCAGA ACCCGACGAACTACGGCGGGGTCAACCTCATCACCCGCCTCGAGGAGCGC ACCGCCAACGTGCCTGCTGACCCCGCGGCAGAGCCGCAGGCCGCGGCGAT CGCCGGGCGGATCTCCGACAAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig55409:2..523-

>mRNA_P-wetherbeei_contig55409.1.1 ID=mRNA_P-wetherbeei_contig55409.1.1|Name=mRNA_P-wetherbeei_contig55409.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=522bp|location=Sequence derived from alignment at P-wetherbeei_contig55409:2..523- (Phaeothamnion wetherbeei SAG_119_79)
CATCGCATTCGACCCATCCGATCGGCAGCGGTCGTCCTGTCGACCGTCGC
CCTCGGGGCAGGCGTGCTCGCCGCCCCGCCGGCCTCCGCCGACCCGTCGC
CCGCCCTGCGGGCGGCCAAGGCCGCGACCTCCACGGACAGCACGCCGTCC
ACGATCGCCGCCGAGTGGCTGGCCGGCGAGCTCACGAACGGCCTCATGGT
CGGCGACGGCGGCCCCGACTTCGGTCTCACGATCGACACCGGCATGGCCC
TGTCGACGGTCCGCGGCCAGGGTGACGTCAACGTGGCGATCACCACGGCC
CTCGAAGCCCGCATCGGCGAGTACGTCGGCGACGGCACCAAGGAGTCCTA
CGCCGGGCCGCTGGCCAAGGCCGCCGCCTACGCCAAGGTGGCGAAGCAGA
ACCCGACGAACTACGGCGGGGTCAACCTCATCACCCGCCTCGAGGAGCGC
ACCGCCAACGTGCCTGCTGACCCCGCGGCAGAGCCGCAGGCCGCGGCGAT
CGCCGGGCGGATCTCCGACAAG
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