mRNA_P-wetherbeei_contig5537.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig5537.1.1
Unique NamemRNA_P-wetherbeei_contig5537.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5537.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig5537contigP-wetherbeei_contig5537:1974..2677 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size704
Hectar predicted targeting categoryother localisation
Exons1
Cds size453
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186825.1317737-UTR-P-wetherbeei_contig5537:1973..22141683186825.1317737-UTR-P-wetherbeei_contig5537:1973..2214Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig5537 1974..2214 -
1683186825.148184-UTR-P-wetherbeei_contig5537:2667..26771683186825.148184-UTR-P-wetherbeei_contig5537:2667..2677Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig5537 2668..2677 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186825.1400266-CDS-P-wetherbeei_contig5537:2214..26671683186825.1400266-CDS-P-wetherbeei_contig5537:2214..2667Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5537 2215..2667 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig5537.1.1prot_P-wetherbeei_contig5537.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig5537 2215..2667 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig5537.1.1

>prot_P-wetherbeei_contig5537.1.1 ID=prot_P-wetherbeei_contig5537.1.1|Name=mRNA_P-wetherbeei_contig5537.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=151bp
MDSSDVRKKVDFKGVAGTSIIDKRRRISTIEVWITSSGRTTAREEIDEGL
SASAGSDDSGRWDGYASPTGQYGSGAQRVLRMTLAAERLSAAGEYSMLGK
CEERLALERARNAVTSTALVYRENSATTTHWTLFVRCDRTPGIGRSRRCP
*
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mRNA from alignment at P-wetherbeei_contig5537:1974..2677-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig5537.1.1 ID=mRNA_P-wetherbeei_contig5537.1.1|Name=mRNA_P-wetherbeei_contig5537.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=704bp|location=Sequence derived from alignment at P-wetherbeei_contig5537:1974..2677- (Phaeothamnion wetherbeei SAG_119_79)
CGGCGCTCCGATGGATAGCAGCGATGTCAGGAAGAAGGTCGACTTCAAGG
GCGTCGCTGGCACGAGTATCATCGACAAACGAAGACGTATCTCAACGATC
GAGGTTTGGATTACATCATCAGGGAGAACTACAGCCCGCGAGGAAATCGA
TGAAGGGCTTAGCGCATCGGCTGGTTCCGACGACAGCGGTCGTTGGGATG
GTTATGCATCACCAACAGGGCAGTACGGTTCCGGAGCGCAGCGCGTGTTG
AGAATGACGCTCGCCGCCGAACGGCTTAGCGCAGCCGGGGAATATTCAAT
GTTGGGAAAGTGTGAAGAGCGACTTGCTTTAGAAAGGGCTCGTAACGCTG
TAACAAGTACGGCCCTTGTTTACCGCGAGAACAGTGCGACGACGACACAC
TGGACATTATTCGTCAGGTGCGACCGGACTCCTGGGATCGGCCGCTCACG
TCGCTGCCCTTAGAGACGTATGTGGAACGTCCAGGTTGAGACACGCCGGC
GGCACGTAAGGAGCAGGTGGCGGTGGCAGTGGCCGCGGGCTCCTGGCCCG
GTGGCACCCCTGCGCCTCTCCCGCTGCCGCTAATCCGTGTTGGAAAGCTG
CTCAGTCAGCTACTCAGCACTTGACGGCGTCGGCAAGAACGTCTCACTGG
CGGTTACATCTTGTGTAACCGTCCCGTGCGTTCTCTTAATTCACTCTCTT
CTCT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig5537:1974..2677-

>mRNA_P-wetherbeei_contig5537.1.1 ID=mRNA_P-wetherbeei_contig5537.1.1|Name=mRNA_P-wetherbeei_contig5537.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=453bp|location=Sequence derived from alignment at P-wetherbeei_contig5537:1974..2677- (Phaeothamnion wetherbeei SAG_119_79)
ATGGATAGCAGCGATGTCAGGAAGAAGGTCGACTTCAAGGGCGTCGCTGG
CACGAGTATCATCGACAAACGAAGACGTATCTCAACGATCGAGGTTTGGA
TTACATCATCAGGGAGAACTACAGCCCGCGAGGAAATCGATGAAGGGCTT
AGCGCATCGGCTGGTTCCGACGACAGCGGTCGTTGGGATGGTTATGCATC
ACCAACAGGGCAGTACGGTTCCGGAGCGCAGCGCGTGTTGAGAATGACGC
TCGCCGCCGAACGGCTTAGCGCAGCCGGGGAATATTCAATGTTGGGAAAG
TGTGAAGAGCGACTTGCTTTAGAAAGGGCTCGTAACGCTGTAACAAGTAC
GGCCCTTGTTTACCGCGAGAACAGTGCGACGACGACACACTGGACATTAT
TCGTCAGGTGCGACCGGACTCCTGGGATCGGCCGCTCACGTCGCTGCCCT
TAG
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