mRNA_P-wetherbeei_contig55327.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig55327.1.1
Unique NamemRNA_P-wetherbeei_contig55327.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig55327.1.1 vs. uniprot
Match: UPI001C3D208C (threonine synthase n=1 Tax=Miltoncostaea marina TaxID=2843215 RepID=UPI001C3D208C)

HSP 1 Score: 289 bits (739), Expect = 2.210e-95
Identity = 152/171 (88.89%), Postives = 159/171 (92.98%), Query Frame = 1
Query:    1 GNTSASAAAYAARAGITAAVVIPEGKIAAGKLAQALAHGARVLSLDGSFDDALVVVRRLAERHPIALVNSLNEYRIDGQRTGAFELCDDLGDAPDVLCIPVGNAGNINAYWLGFQAYREAGRSTRLPRLYGFQAAGAAPLVLGAPVARPETIATAIRIGNPARGAQAMEAM 513
            GNTSASAAAYAARAG+T AVVIPEGKIAAGKLAQAL HGARVLSLDGSFDDAL VVR L ERHPI+LVNSLNEYRIDGQRT AFE+CDDLGDAPD LCIPVGNAGNI+AYWLGFQAYREA R+ RLPRLYGFQAAGAAPLV GAPVARPET+ATAIRIGNPARG QA+ AM
Sbjct:   83 GNTSASAAAYAARAGLTVAVVIPEGKIAAGKLAQALVHGARVLSLDGSFDDALRVVRELVERHPISLVNSLNEYRIDGQRTAAFEVCDDLGDAPDALCIPVGNAGNISAYWLGFQAYREAERARRLPRLYGFQAAGAAPLVEGAPVARPETVATAIRIGNPARGEQALAAM 253          
BLAST of mRNA_P-wetherbeei_contig55327.1.1 vs. uniprot
Match: UPI001C3E1EEA (threonine synthase n=1 Tax=Miltoncostaea oceani TaxID=2843216 RepID=UPI001C3E1EEA)

HSP 1 Score: 289 bits (739), Expect = 2.280e-95
Identity = 153/171 (89.47%), Postives = 160/171 (93.57%), Query Frame = 1
Query:    1 GNTSASAAAYAARAGITAAVVIPEGKIAAGKLAQALAHGARVLSLDGSFDDALVVVRRLAERHPIALVNSLNEYRIDGQRTGAFELCDDLGDAPDVLCIPVGNAGNINAYWLGFQAYREAGRSTRLPRLYGFQAAGAAPLVLGAPVARPETIATAIRIGNPARGAQAMEAM 513
            GNTSASAAAYAARAG+T AVVIPEGKIAAGKLAQAL HGA+VLSLDGSFDDAL VVR L ERHPI+LVNSLNEYRIDGQRTGAFE+CDDLGDAPDVLCIPVGNAGNI+AYWLGF AYREA RS R+PRLYGFQAAGAAPLV GAPVA PETIATAIRIGNPARG QAM+AM
Sbjct:   83 GNTSASAAAYAARAGLTVAVVIPEGKIAAGKLAQALVHGAKVLSLDGSFDDALRVVRGLVERHPISLVNSLNEYRIDGQRTGAFEVCDDLGDAPDVLCIPVGNAGNISAYWLGFNAYREAERSRRVPRLYGFQAAGAAPLVEGAPVAAPETIATAIRIGNPARGDQAMDAM 253          
BLAST of mRNA_P-wetherbeei_contig55327.1.1 vs. uniprot
Match: A0A2H6K5D2_9BACT (Threonine synthase n=2 Tax=Bacteria TaxID=2 RepID=A0A2H6K5D2_9BACT)

HSP 1 Score: 237 bits (605), Expect = 4.690e-75
Identity = 125/174 (71.84%), Postives = 143/174 (82.18%), Query Frame = 1
Query:    1 GNTSASAAAYAARAGITAAVVIPEGKIAAGKLAQALAHGARVLSLDGSFDDALVVVRRLAERHPIALVNSLNEYRIDGQRTGAFELCDDLGDAPDVLCIPVGNAGNINAYWLGFQAYREAGRSTRLPRLYGFQAAGAAPLVLGAPVARPETIATAIRIGNPARGAQAMEAMGAS 522
            GNTSA+AAAYA RAGI   V+IPEGKIAAGKLAQAL HGARV +++G+FD AL +VR + + +P+ LVNS+N YRI+GQ+TGAFE+ D LGDAPD L IPVGNAGNI AYW GF+ YREAG S  LPR+ GFQA GAAPLVLG PV  PETIATAIRIGNPARG QA+EA  AS
Sbjct:   86 GNTSAAAAAYAGRAGIRCIVIIPEGKIAAGKLAQALTHGARVTAIEGNFDQALDIVREIVDNYPVQLVNSINPYRIEGQKTGAFEIVDALGDAPDFLSIPVGNAGNITAYWQGFKEYREAGLSDSLPRMIGFQATGAAPLVLGHPVESPETIATAIRIGNPARGDQALEAADAS 259          
BLAST of mRNA_P-wetherbeei_contig55327.1.1 vs. uniprot
Match: A0A7W1AQS8_9ACTN (Threonine synthase n=1 Tax=Thermoleophilaceae bacterium TaxID=2732252 RepID=A0A7W1AQS8_9ACTN)

HSP 1 Score: 231 bits (590), Expect = 1.880e-73
Identity = 120/170 (70.59%), Postives = 141/170 (82.94%), Query Frame = 1
Query:    1 GNTSASAAAYAARAGITAAVVIPEGKIAAGKLAQALAHGARVLSLDGSFDDALVVVRRLAERHPIALVNSLNEYRIDGQRTGAFELCDDLGDAPDVLCIPVGNAGNINAYWLGFQAYREAGRSTRLPRLYGFQAAGAAPLVLGAPVARPETIATAIRIGNPARGAQAMEA 510
            GNT+ASAAAYAARAG+  AV++PEGKIA GKLAQAL HGARV++L G+FD AL +VR+LA+RHP+ALVNS+NEYRI+GQ+T AFE+CD LG+APD LCIPVGNAGN+ AYW GF+ Y         P LYGFQAAGAAPLV GAPV  PET+A+AIRIGNPAR  +AM A
Sbjct:   33 GNTAASAAAYAARAGLRGAVIVPEGKIATGKLAQALMHGARVIALRGNFDQALTLVRKLADRHPVALVNSINEYRIEGQKTAAFEICDALGEAPDALCIPVGNAGNVTAYWRGFEEYGVR------PHLYGFQAAGAAPLVKGAPVESPETVASAIRIGNPARWEEAMGA 196          
BLAST of mRNA_P-wetherbeei_contig55327.1.1 vs. uniprot
Match: A0A3L7W8M5_9CHLR (Threonine synthase n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A3L7W8M5_9CHLR)

HSP 1 Score: 233 bits (593), Expect = 3.430e-73
Identity = 118/162 (72.84%), Postives = 140/162 (86.42%), Query Frame = 1
Query:    1 GNTSASAAAYAARAGITAAVVIPEGKIAAGKLAQALAHGARVLSLDGSFDDALVVVRRLAERHPIALVNSLNEYRIDGQRTGAFELCDDLGDAPDVLCIPVGNAGNINAYWLGFQAYREAGRSTRLPRLYGFQAAGAAPLVLGAPVARPETIATAIRIGNPA 486
            GNTSASAAAYAAR G+ + V++P G+IA GKLAQA+ HGA +++++GSFDDAL + R+L ER  IALVNS+N YRI GQ+TGAFE+ DDLG+APD+LCIPVGNAGNI AYW GF  YR+A RSTRLP+++GFQAAGAAPLVLG PVA PETIATAIRIGNPA
Sbjct:   89 GNTSASAAAYAARHGVPSYVIVPAGRIAMGKLAQAVVHGAEIVAIEGSFDDALNIARQLGERPGIALVNSVNPYRIQGQKTGAFEIVDDLGEAPDLLCIPVGNAGNITAYWRGFNEYRQAERSTRLPKMWGFQAAGAAPLVLGHPVANPETIATAIRIGNPA 250          
BLAST of mRNA_P-wetherbeei_contig55327.1.1 vs. uniprot
Match: A0A7C3T3C4_9ACTN (Threonine synthase n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A7C3T3C4_9ACTN)

HSP 1 Score: 230 bits (586), Expect = 7.360e-73
Identity = 124/170 (72.94%), Postives = 143/170 (84.12%), Query Frame = 1
Query:    1 GNTSASAAAYAARAGITAAVVIPEGKIAAGKLAQALAHGARVLSLDGSFDDALVVVRRLAERHPIALVNSLNEYRIDGQRTGAFELCDDLGDAPDVLCIPVGNAGNINAYWLGFQAYREAGRSTRLPRLYGFQAAGAAPLVLGAPVARPETIATAIRIGNPARGAQAMEA 510
            GNTSASAAA+AA+AGI A VVIPEGKIA GKLAQALA+GA V+S+ G+FD AL  VR+++ R PIALVNS+N YRI+GQ+TGAFE+ D LGD PD  CIPVGNAGNI +YW G++ YR AGRSTRLP + GFQAAGAAPLVLG  V RPETIATAIRIGNPARG +A+ A
Sbjct:   31 GNTSASAAAFAAKAGIKAVVVIPEGKIAMGKLAQALAYGAHVISIPGNFDVALEAVRQVSARLPIALVNSVNPYRIEGQKTGAFEIVDTLGDVPDYHCIPVGNAGNITSYWKGYREYRAAGRSTRLPIMCGFQAAGAAPLVLGHRVERPETIATAIRIGNPARGDEALAA 200          
BLAST of mRNA_P-wetherbeei_contig55327.1.1 vs. uniprot
Match: A0A838I4K3_9ACTN (Threonine synthase n=1 Tax=Thermoleophilaceae bacterium TaxID=2732252 RepID=A0A838I4K3_9ACTN)

HSP 1 Score: 230 bits (586), Expect = 9.110e-73
Identity = 122/174 (70.11%), Postives = 143/174 (82.18%), Query Frame = 1
Query:    1 GNTSASAAAYAARAGITAAVVIPEGKIAAGKLAQALAHGARVLSLDGSFDDALVVVRRLAERHPIALVNSLNEYRIDGQRTGAFELCDDLGDAPDVLCIPVGNAGNINAYWLGFQAYREAGRSTRLPRLYGFQAAGAAPLVLGAPVARPETIATAIRIGNPARGAQAMEAMGAS 522
            GNT+ASAAAYAARAG+  AV++PEGKIA GKLAQAL HGARV++L G+FD+AL +VR+LAERHPIALVNS+NE+RI GQ+TGAFE+CD LG+APD LCIPVGNAGN+ A+W GF  Y  A      PR++GFQA GAAPLV GAPV  PET+A+AIRIGNPAR   AM A  AS
Sbjct:   53 GNTAASAAAYAARAGLRGAVIVPEGKIATGKLAQALMHGARVIALRGNFDEALRLVRQLAERHPIALVNSVNEFRIAGQKTGAFEVCDQLGEAPDALCIPVGNAGNVTAWWRGFTEYEAA------PRMHGFQAEGAAPLVTGAPVEFPETVASAIRIGNPARWEDAMNAFTAS 220          
BLAST of mRNA_P-wetherbeei_contig55327.1.1 vs. uniprot
Match: A0A6N6L3U4_9CHLR (Threonine synthase n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A6N6L3U4_9CHLR)

HSP 1 Score: 231 bits (588), Expect = 1.790e-72
Identity = 118/170 (69.41%), Postives = 146/170 (85.88%), Query Frame = 1
Query:    1 GNTSASAAAYAARAGITAAVVIPEGKIAAGKLAQALAHGARVLSLDGSFDDALVVVRRLAERHPIALVNSLNEYRIDGQRTGAFELCDDLGDAPDVLCIPVGNAGNINAYWLGFQAYREAGRSTRLPRLYGFQAAGAAPLVLGAPVARPETIATAIRIGNPARGAQAMEA 510
            GNT+ASAAAYAARAG+ A V+IP+GK+AAGKLA A+A+GA+V+ +DGSFDDAL +V ++ E+HPIALVNS+N YR++GQ+TGAFE+CD LG APD LC+PVGNAGNI+AYWLGF+ Y E  +ST LP+L G QAAGAAPLVLG P+ +P T+ATAIRIG PARG QA+ A
Sbjct:   87 GNTAASAAAYAARAGLRAIVLIPQGKVAAGKLAGAVAYGAQVVQIDGSFDDALTLVVKITEKHPIALVNSINPYRLEGQKTGAFEICDTLGKAPDWLCLPVGNAGNISAYWLGFRQYNEE-KSTGLPKLLGVQAAGAAPLVLGHPIDKPSTVATAIRIGRPARGEQALTA 255          
BLAST of mRNA_P-wetherbeei_contig55327.1.1 vs. uniprot
Match: A0A3L7WYS1_9CHLR (Threonine synthase n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A3L7WYS1_9CHLR)

HSP 1 Score: 230 bits (587), Expect = 3.190e-72
Identity = 118/162 (72.84%), Postives = 139/162 (85.80%), Query Frame = 1
Query:    1 GNTSASAAAYAARAGITAAVVIPEGKIAAGKLAQALAHGARVLSLDGSFDDALVVVRRLAERHPIALVNSLNEYRIDGQRTGAFELCDDLGDAPDVLCIPVGNAGNINAYWLGFQAYREAGRSTRLPRLYGFQAAGAAPLVLGAPVARPETIATAIRIGNPA 486
            GNTSASAAAYAAR G+   VVIP+G+IAAGKLAQA+AHGA ++++DGSFDDAL + R L ER  +ALVNS+N YRI+GQ+T A+E+ DDLGDAPDVLCIPVGNAGNI AYW GF+ YR+  RS+ LP+++GFQAAGAAPLVLG PV  PETIATAIRIGNPA
Sbjct:   94 GNTSASAAAYAARHGLRCYVVIPDGRIAAGKLAQAVAHGAEIVAIDGSFDDALRIARELGERPGVALVNSVNPYRIEGQKTAAYEIVDDLGDAPDVLCIPVGNAGNITAYWRGFREYRQLERSSGLPKMWGFQAAGAAPLVLGHPVEHPETIATAIRIGNPA 255          
BLAST of mRNA_P-wetherbeei_contig55327.1.1 vs. uniprot
Match: A0A2W4TUC0_9BACT (Threonine synthase n=1 Tax=bacterium TaxID=1869227 RepID=A0A2W4TUC0_9BACT)

HSP 1 Score: 229 bits (583), Expect = 9.580e-72
Identity = 116/162 (71.60%), Postives = 138/162 (85.19%), Query Frame = 1
Query:    1 GNTSASAAAYAARAGITAAVVIPEGKIAAGKLAQALAHGARVLSLDGSFDDALVVVRRLAERHPIALVNSLNEYRIDGQRTGAFELCDDLGDAPDVLCIPVGNAGNINAYWLGFQAYREAGRSTRLPRLYGFQAAGAAPLVLGAPVARPETIATAIRIGNPA 486
            GNT+ASAAAYAARAGITA V++P GK+A GKLAQA+A+GAR++SLDG+FD AL V R LAER+P ALVNS+N YR++GQ T A+E+CD+LGDAPDV+ +PVGN GNI AYWLGF+ Y E G STRLPR+ G QA GAAPLV G PVA+PET+ATAIRIG PA
Sbjct:   84 GNTAASAAAYAARAGITAGVLLPRGKVAVGKLAQAVAYGARIVSLDGNFDAALDVARALAERYPAALVNSVNPYRVEGQATAAYEICDELGDAPDVVALPVGNGGNITAYWLGFRRYAERGSSTRLPRMLGVQAEGAAPLVRGEPVAQPETVATAIRIGRPA 245          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig55327.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI001C3D208C2.210e-9588.89threonine synthase n=1 Tax=Miltoncostaea marina Ta... [more]
UPI001C3E1EEA2.280e-9589.47threonine synthase n=1 Tax=Miltoncostaea oceani Ta... [more]
A0A2H6K5D2_9BACT4.690e-7571.84Threonine synthase n=2 Tax=Bacteria TaxID=2 RepID=... [more]
A0A7W1AQS8_9ACTN1.880e-7370.59Threonine synthase n=1 Tax=Thermoleophilaceae bact... [more]
A0A3L7W8M5_9CHLR3.430e-7372.84Threonine synthase n=1 Tax=Chloroflexi bacterium T... [more]
A0A7C3T3C4_9ACTN7.360e-7372.94Threonine synthase n=1 Tax=Actinomycetia bacterium... [more]
A0A838I4K3_9ACTN9.110e-7370.11Threonine synthase n=1 Tax=Thermoleophilaceae bact... [more]
A0A6N6L3U4_9CHLR1.790e-7269.41Threonine synthase n=1 Tax=Chloroflexi bacterium T... [more]
A0A3L7WYS1_9CHLR3.190e-7272.84Threonine synthase n=1 Tax=Chloroflexi bacterium T... [more]
A0A2W4TUC0_9BACT9.580e-7271.60Threonine synthase n=1 Tax=bacterium TaxID=1869227... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig55327contigP-wetherbeei_contig55327:3..524 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog1042163.BRLA_c012630
Preferred namethrC
PFAMsPALP
Model size522
Max annot lvl91061|Bacilli
KEGG rclassRC00017,RC00526
KEGG koko:K01733
KEGG ReactionR01466,R05086
KEGG Pathwayko00260,ko00750,ko01100,ko01110,ko01120,ko01230,map00260,map00750,map01100,map01110,map01120,map01230
KEGG ModuleM00018
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0004795,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0008144,GO:0016829,GO:0016835,GO:0016838,GO:0019842,GO:0030170,GO:0036094,GO:0043167,GO:0043168,GO:0044424,GO:0044464,GO:0048037,GO:0050662,GO:0070279,GO:0097159,GO:1901363
Exons1
Evalue1.11e-70
EggNOG OGsCOG0498@1|root,COG0498@2|Bacteria,1TP25@1239|Firmicutes,4HA1F@91061|Bacilli,26RAH@186822|Paenibacillaceae
EC4.2.3.1
DescriptionCatalyzes the gamma-elimination of phosphate from L- phosphohomoserine and the beta-addition of water to produce L- threonine
Cds size522
COG categoryE
BiGG ReactioniSB619.SA_RS06615,iYO844.BSU32250
BRITEko00000,ko00001,ko00002,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186824.8469908-CDS-P-wetherbeei_contig55327:2..5241683186824.8469908-CDS-P-wetherbeei_contig55327:2..524Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig55327 3..524 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig55327.1.1prot_P-wetherbeei_contig55327.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig55327 3..524 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig55327.1.1

>prot_P-wetherbeei_contig55327.1.1 ID=prot_P-wetherbeei_contig55327.1.1|Name=mRNA_P-wetherbeei_contig55327.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=174bp
GNTSASAAAYAARAGITAAVVIPEGKIAAGKLAQALAHGARVLSLDGSFD
DALVVVRRLAERHPIALVNSLNEYRIDGQRTGAFELCDDLGDAPDVLCIP
VGNAGNINAYWLGFQAYREAGRSTRLPRLYGFQAAGAAPLVLGAPVARPE
TIATAIRIGNPARGAQAMEAMGAS
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mRNA from alignment at P-wetherbeei_contig55327:3..524+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig55327.1.1 ID=mRNA_P-wetherbeei_contig55327.1.1|Name=mRNA_P-wetherbeei_contig55327.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=522bp|location=Sequence derived from alignment at P-wetherbeei_contig55327:3..524+ (Phaeothamnion wetherbeei SAG_119_79)
GGGAACACCTCGGCATCGGCCGCCGCATATGCCGCGCGCGCCGGCATCAC GGCCGCGGTGGTCATCCCCGAGGGCAAGATCGCCGCCGGCAAGCTCGCGC AGGCGCTGGCGCACGGGGCACGCGTGCTGTCGCTCGACGGCAGCTTCGAC GACGCCCTGGTGGTGGTGCGCCGGCTGGCCGAGCGCCATCCGATCGCCCT CGTCAACTCCCTCAACGAGTACCGCATCGACGGGCAGCGCACCGGCGCCT TCGAGCTCTGCGACGATCTCGGCGACGCGCCCGACGTGCTCTGCATCCCG GTGGGCAACGCCGGCAACATCAACGCCTACTGGCTGGGCTTCCAGGCCTA TCGCGAGGCCGGGCGCTCCACCCGCCTGCCGCGCCTCTACGGCTTCCAGG CCGCAGGCGCCGCGCCCCTCGTGCTGGGCGCTCCCGTGGCCCGGCCCGAG ACCATCGCCACCGCCATCCGCATCGGCAACCCGGCCCGCGGGGCCCAGGC GATGGAGGCCATGGGCGCCTCG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig55327:3..524+

>mRNA_P-wetherbeei_contig55327.1.1 ID=mRNA_P-wetherbeei_contig55327.1.1|Name=mRNA_P-wetherbeei_contig55327.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=522bp|location=Sequence derived from alignment at P-wetherbeei_contig55327:3..524+ (Phaeothamnion wetherbeei SAG_119_79)
GGGAACACCTCGGCATCGGCCGCCGCATATGCCGCGCGCGCCGGCATCAC
GGCCGCGGTGGTCATCCCCGAGGGCAAGATCGCCGCCGGCAAGCTCGCGC
AGGCGCTGGCGCACGGGGCACGCGTGCTGTCGCTCGACGGCAGCTTCGAC
GACGCCCTGGTGGTGGTGCGCCGGCTGGCCGAGCGCCATCCGATCGCCCT
CGTCAACTCCCTCAACGAGTACCGCATCGACGGGCAGCGCACCGGCGCCT
TCGAGCTCTGCGACGATCTCGGCGACGCGCCCGACGTGCTCTGCATCCCG
GTGGGCAACGCCGGCAACATCAACGCCTACTGGCTGGGCTTCCAGGCCTA
TCGCGAGGCCGGGCGCTCCACCCGCCTGCCGCGCCTCTACGGCTTCCAGG
CCGCAGGCGCCGCGCCCCTCGTGCTGGGCGCTCCCGTGGCCCGGCCCGAG
ACCATCGCCACCGCCATCCGCATCGGCAACCCGGCCCGCGGGGCCCAGGC
GATGGAGGCCATGGGCGCCTCG
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