mRNA_P-wetherbeei_contig553.4.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig553.4.1
Unique NamemRNA_P-wetherbeei_contig553.4.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig553.4.1 vs. uniprot
Match: W7T7R7_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7T7R7_9STRA)

HSP 1 Score: 66.6 bits (161), Expect = 1.440e-9
Identity = 55/178 (30.90%), Postives = 82/178 (46.07%), Query Frame = 3 
Query:   78 DKEADMYSVTPVPTYLEMLQWAAGVDAKVDAGLLPGLNVGGL----PSGG-----GRPLSGQDRSRFVAAANVLKRRSRQTGPMTAGEMESLRGALEGIEKLIADRDTLPKPPFPLAGGVGGPAANPLACDDAIRTAAGLEGDAVIC-------SPVYGSREVRDKIYLYVWSLLQKQ 563
            D   +   V  VP + EML WA  +DA+V+   + GL  GGL    PS        RPLS +D  +      +L +R+         EME LR AL  +E L+ D           A  +     + L  + A R  +  +    +         P+YGS+EVRD+IYLY+WSL++++
Sbjct:  124 DDTEERIEVVRVPDFEEMLAWAIRMDARVERRRIAGL--GGLVAEPPSPQVDLTKRRPLSKRDEDKMNTVIRMLSQRAESKRVFYPNEMEELREALRDMESLMKDD----------AEHLKKAQQDALILNKAGRAKSRFQKKREVMIEETGDFDPIYGSKEVRDQIYLYLWSLVKRE 289
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BLAST of mRNA_P-wetherbeei_contig553.4.1 vs. uniprot
Match: D7G7I8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7I8_ECTSI)

HSP 1 Score: 60.8 bits (146), Expect = 3.520e-8
Identity = 49/162 (30.25%), Postives = 73/162 (45.06%), Query Frame = 3 
Query:  129 MLQWAAGVDAKVDAGLLPGLNVGGLPSGGGRP--------------LSGQDRSRFVAAANVLKRRSRQTGPMTAGEMESLRGALEGIEKLIADRDTLPKPPFPLAGGVGGPAANPLACDDAIRTAAG--LEGDAVICSPVYGSREVRDKIYLYVWSLLQKQQ 566
            ML WA   D ++  G LP L     PSG G                LS Q++++    + +L                +LR A+ G+   + ++DT  K     A    GP  +     D   TAAG   E + +I + +YGSREVRD++YLY WSL++ +Q
Sbjct:    1 MLVWAEETDRRIATGQLPPLGSRRPPSGDGAVTVTAAEQQGAGASLLSDQEQAQMATLSELLSXXXXXXXXXXXXXESALRAAIAGLSASV-EKDTDAKALDVAADTSSGPDTS-----DGDVTAAGHVAEAEDIIPNHIYGSREVRDQVYLYAWSLMKNRQ 156
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig553.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
W7T7R7_9STRA1.440e-930.90Uncharacterized protein n=2 Tax=Monodopsidaceae Ta... [more]
D7G7I8_ECTSI3.520e-830.25Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig553contigP-wetherbeei_contig553:3470..4357 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size613
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-02_000450.1
Cds size585
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186824.4760385-UTR-P-wetherbeei_contig553:3469..34921683186824.4760385-UTR-P-wetherbeei_contig553:3469..3492Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig553 3470..3492 -
1683186824.500194-UTR-P-wetherbeei_contig553:4352..43571683186824.500194-UTR-P-wetherbeei_contig553:4352..4357Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig553 4353..4357 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186824.4846673-CDS-P-wetherbeei_contig553:3492..37541683186824.4846673-CDS-P-wetherbeei_contig553:3492..3754Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig553 3493..3754 -
1683186824.4923449-CDS-P-wetherbeei_contig553:4029..43521683186824.4923449-CDS-P-wetherbeei_contig553:4029..4352Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig553 4030..4352 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig553.4.1prot_P-wetherbeei_contig553.4.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig553 3493..4352 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig553.4.1

>prot_P-wetherbeei_contig553.4.1 ID=prot_P-wetherbeei_contig553.4.1|Name=mRNA_P-wetherbeei_contig553.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=195bp
MLPVDLNSMRHVRRRGSLPRCSMCDKEADMYSVTPVPTYLEMLQWAAGVD
AKVDAGLLPGLNVGGLPSGGGRPLSGQDRSRFVAAANVLKRRSRQTGPMT
AGEMESLRGALEGIEKLIADRDTLPKPPFPLAGGVGGPAANPLACDDAIR
TAAGLEGDAVICSPVYGSREVRDKIYLYVWSLLQKQQGRGGSAQ*
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mRNA from alignment at P-wetherbeei_contig553:3470..4357-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig553.4.1 ID=mRNA_P-wetherbeei_contig553.4.1|Name=mRNA_P-wetherbeei_contig553.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=888bp|location=Sequence derived from alignment at P-wetherbeei_contig553:3470..4357- (Phaeothamnion wetherbeei SAG_119_79)
AGGCGATGCTGCCCGTCGATTTAAACTCTATGAGGCACGTACGCAGAAGA
GGATCCCTTCCTCGGTGCTCTATGTGCGACAAGGAAGCTGATATGTACTC
TGTCACGCCCGTCCCGACGTACCTTGAGATGCTTCAGTGGGCGGCCGGGG
TCGACGCGAAAGTCGATGCCGGCCTCCTCCCCGGATTAAACGTCGGTGGG
CTTCCGAGCGGCGGAGGGCGGCCTTTGAGCGGGCAAGACCGGTCTCGGTT
CGTGGCGGCGGCGAACGTGCTCAAGCGTCGCAGCAGGCAGACAGGGCCGA
TGACCGCCGGCGAGATGGAATCATTGAGGTATGTTTTGTGCTGCTGAAAG
AAGCAGCCTCCCTCTTTACCTTATTGCGAGATGCACGAGGCTGCGACACA
GAGAACTTTCTTCGCCGATGAAGAGCTTACAAATGCCTTATTGTTTTGGT
TCATGAAATGTCAATCCTGTTATCAGCTGTGCTGTTCGCAAATTCAAGGA
TCGCGTCACAACGCCAGCCTCTATTCTTTTCAACAGTTGCCTGGTTCTTT
TGCAGCTGCTACCATTTTTCACGCTTGCCGTTCGCTTCCGTATTCTCCTG
CAGAGGAGCCTTGGAAGGCATTGAGAAGCTCATTGCCGACCGCGACACTC
TGCCAAAGCCGCCGTTTCCCCTGGCTGGCGGCGTCGGCGGCCCGGCGGCG
AATCCGCTGGCGTGTGATGACGCAATCCGGACGGCGGCCGGACTGGAGGG
GGACGCCGTGATTTGCAGCCCCGTCTACGGCTCGCGGGAGGTGCGAGACA
AGATTTATCTTTATGTGTGGTCGCTCCTGCAAAAACAGCAGGGCCGCGGA
GGTTCTGCACAATGAACAAAAAACAACAGCCATCGTTC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig553:3470..4357-

>mRNA_P-wetherbeei_contig553.4.1 ID=mRNA_P-wetherbeei_contig553.4.1|Name=mRNA_P-wetherbeei_contig553.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=585bp|location=Sequence derived from alignment at P-wetherbeei_contig553:3470..4357- (Phaeothamnion wetherbeei SAG_119_79)
ATGCTGCCCGTCGATTTAAACTCTATGAGGCACGTACGCAGAAGAGGATC
CCTTCCTCGGTGCTCTATGTGCGACAAGGAAGCTGATATGTACTCTGTCA
CGCCCGTCCCGACGTACCTTGAGATGCTTCAGTGGGCGGCCGGGGTCGAC
GCGAAAGTCGATGCCGGCCTCCTCCCCGGATTAAACGTCGGTGGGCTTCC
GAGCGGCGGAGGGCGGCCTTTGAGCGGGCAAGACCGGTCTCGGTTCGTGG
CGGCGGCGAACGTGCTCAAGCGTCGCAGCAGGCAGACAGGGCCGATGACC
GCCGGCGAGATGGAATCATTGAGAGGAGCCTTGGAAGGCATTGAGAAGCT
CATTGCCGACCGCGACACTCTGCCAAAGCCGCCGTTTCCCCTGGCTGGCG
GCGTCGGCGGCCCGGCGGCGAATCCGCTGGCGTGTGATGACGCAATCCGG
ACGGCGGCCGGACTGGAGGGGGACGCCGTGATTTGCAGCCCCGTCTACGG
CTCGCGGGAGGTGCGAGACAAGATTTATCTTTATGTGTGGTCGCTCCTGC
AAAAACAGCAGGGCCGCGGAGGTTCTGCACAATGA
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