mRNA_P-wetherbeei_contig55285.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig55285.1.1
Unique NamemRNA_P-wetherbeei_contig55285.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig55285.1.1 vs. uniprot
Match: A0A080MBF9_9PROT (L-fuculose phosphate aldolase n=5 Tax=Candidatus Accumulibacter TaxID=327159 RepID=A0A080MBF9_9PROT)

HSP 1 Score: 190 bits (482), Expect = 9.660e-59
Identity = 92/139 (66.19%), Postives = 113/139 (81.29%), Query Frame = 1
Query:    1 SSEWRFHRDIYVARADTNAVVHVHSPYATALACQRRDIPGFHYMIAKAGGDSIRCASYATFGTQALSDAALVALDARRACLLANHGMIALGADLERAVDLTREVEELAKQYALALSCGTPVLLSAAEMSAALERFKTYG 417
            SSEWRFHRD+Y ARAD  A++H HSP+AT++AC RRDIP FHYMIA+ GGDS+RCA+YATFGTQALSDA L+A+  RRACLLANHGM+ LG DL++A+DL  E+E L +QY  A   G PVLL AAEM+  L++F +YG
Sbjct:   76 SSEWRFHRDLYAARADAGAILHAHSPFATSIACLRRDIPPFHYMIARFGGDSVRCAAYATFGTQALSDAVLLAIVNRRACLLANHGMLVLGKDLQQAIDLGIELETLCEQYWRACQLGQPVLLDAAEMATVLDKFASYG 214          
BLAST of mRNA_P-wetherbeei_contig55285.1.1 vs. uniprot
Match: A0A383X5R6_9RHOO (Class II aldolase n=1 Tax=Rhodocyclales bacterium TaxID=2072421 RepID=A0A383X5R6_9RHOO)

HSP 1 Score: 188 bits (477), Expect = 4.600e-58
Identity = 95/139 (68.35%), Postives = 109/139 (78.42%), Query Frame = 1
Query:    1 SSEWRFHRDIYVARADTNAVVHVHSPYATALACQRRDIPGFHYMIAKAGGDSIRCASYATFGTQALSDAALVALDARRACLLANHGMIALGADLERAVDLTREVEELAKQYALALSCGTPVLLSAAEMSAALERFKTYG 417
            SSEWRFHRDIY AR +  AVVH H+P+ATALAC R DIP FHYMIA+ GG ++RCA+YATFGTQALSDAAL AL+ R ACLLANHGM+A G DL +A+DL  E E L +QY  AL  G PVLLS AEM   LE+F+TYG
Sbjct:   71 SSEWRFHRDIYAARPEAGAVVHTHAPFATALACLRADIPPFHYMIARFGGATVRCAAYATFGTQALSDAALAALEGRCACLLANHGMLAFGRDLRQALDLAVEFESLCEQYWRALQIGRPVLLSDAEMETVLEKFRTYG 209          
BLAST of mRNA_P-wetherbeei_contig55285.1.1 vs. uniprot
Match: A0A212JWS0_9PROT (L-fuculose-1-phosphate aldolase n=1 Tax=uncultured Alphaproteobacteria bacterium TaxID=91750 RepID=A0A212JWS0_9PROT)

HSP 1 Score: 187 bits (474), Expect = 1.530e-57
Identity = 93/139 (66.91%), Postives = 109/139 (78.42%), Query Frame = 1
Query:    1 SSEWRFHRDIYVARADTNAVVHVHSPYATALACQRRDIPGFHYMIAKAGGDSIRCASYATFGTQALSDAALVALDARRACLLANHGMIALGADLERAVDLTREVEELAKQYALALSCGTPVLLSAAEMSAALERFKTYG 417
            SSEWRFHRDIY  R D  AVVH H+P+ TALACQRR IP FHYMIA AGG +IRCA YATFG+Q LSDAA+ AL+ RRACLLANHGMIA GA+L+ A+ L +EVEELA+QY   L  G P+L+  AEM   LE+F++YG
Sbjct:   73 SSEWRFHRDIYAHRPDVGAVVHTHAPFCTALACQRRGIPAFHYMIAVAGGKTIRCADYATFGSQELSDAAVAALEGRRACLLANHGMIATGANLDAALKLAQEVEELAEQYWRVLQLGEPILIDDAEMDRVLEKFRSYG 211          
BLAST of mRNA_P-wetherbeei_contig55285.1.1 vs. uniprot
Match: C6XC28_METGS (Class II aldolase/adducin family protein n=5 Tax=Methylovorus TaxID=81682 RepID=C6XC28_METGS)

HSP 1 Score: 187 bits (474), Expect = 1.630e-57
Identity = 97/140 (69.29%), Postives = 110/140 (78.57%), Query Frame = 1
Query:    1 SSEWRFHRDIYVARADTNAVVHVHSPYATALACQRRDIPGFHYMIAKAGGDSIRCASYATFGTQALSDAALVALDARRACLLANHGMIALGADLERAVDLTREVEELAKQYALALSCGTPVLLSAAEMSAALERFKTYGA 420
            SSEWRFHRDIY AR +  AV+HVHS +AT+LAC RRDIP FHYMIA AGG  IRCA YA FG+QALSDAAL AL  RRACLLANHGMIALGA L++A+D+  EVE L +QY  AL  G PVLL+ AEM+   E+FK YGA
Sbjct:   69 SSEWRFHRDIYQARPEVGAVIHVHSTFATSLACLRRDIPPFHYMIAVAGGSDIRCAPYALFGSQALSDAALQALQGRRACLLANHGMIALGATLKQALDIAHEVETLCEQYWRALQVGEPVLLTEAEMAEVFEQFKGYGA 208          
BLAST of mRNA_P-wetherbeei_contig55285.1.1 vs. uniprot
Match: A0A423PY64_9GAMM (Fuculose phosphate aldolase n=2 Tax=Salinisphaera TaxID=180541 RepID=A0A423PY64_9GAMM)

HSP 1 Score: 185 bits (470), Expect = 6.010e-57
Identity = 95/141 (67.38%), Postives = 112/141 (79.43%), Query Frame = 1
Query:    1 SSEWRFHRDIYVARADTNAVVHVHSPYATALACQRRDIPGFHYMIAKAGGDSIRCASYATFGTQALSDAALVALDARRACLLANHGMIALGADLERAVDLTREVEELAKQYALALSCGTPVLLSAAEMSAALERFKTYGAR 423
            +SEWRFHRDI   RAD +AVVH H+PYAT ++ QRR+IP  HYMIA AGG +IRCA YATFGT ALS+AAL ALD R ACLLANHGMIA GA L++AV L  EVEELA+QY L+L  G PVLL +AE+   LE+F+TYGA+
Sbjct:   71 TSEWRFHRDILQQRADVHAVVHTHAPYATVVSIQRREIPPLHYMIAAAGGPTIRCADYATFGTAALSEAALTALDGRLACLLANHGMIACGATLDKAVALAVEVEELARQYVLSLQLGGPVLLDSAEIDRVLEKFRTYGAQ 211          
BLAST of mRNA_P-wetherbeei_contig55285.1.1 vs. uniprot
Match: A0A809R6X6_9PROT (Class II aldolase n=1 Tax=Candidatus Desulfobacillus denitrificans TaxID=2608985 RepID=A0A809R6X6_9PROT)

HSP 1 Score: 183 bits (465), Expect = 3.140e-56
Identity = 92/139 (66.19%), Postives = 106/139 (76.26%), Query Frame = 1
Query:    1 SSEWRFHRDIYVARADTNAVVHVHSPYATALACQRRDIPGFHYMIAKAGGDSIRCASYATFGTQALSDAALVALDARRACLLANHGMIALGADLERAVDLTREVEELAKQYALALSCGTPVLLSAAEMSAALERFKTYG 417
            SSEWRFHRD+Y AR +  AVVH H+P+ATALAC R DIP FHYMIA+ GG S+RCA+YA FGTQALSDAAL AL+ R ACLLANHG++  G DL  A+DL  E E L +QY  AL  G PVLLS AEM   LE+FK+YG
Sbjct:   71 SSEWRFHRDLYAARPEAGAVVHAHAPFATALACLRADIPPFHYMIARFGGRSVRCAAYAAFGTQALSDAALAALEGRSACLLANHGLLVFGHDLRHALDLAIEFESLCEQYWRALQLGRPVLLSDAEMEVVLEKFKSYG 209          
BLAST of mRNA_P-wetherbeei_contig55285.1.1 vs. uniprot
Match: UPI001AC3E10C (L-fuculose-phosphate aldolase n=1 Tax=Rhodocyclaceae bacterium TaxID=1898103 RepID=UPI001AC3E10C)

HSP 1 Score: 183 bits (464), Expect = 4.460e-56
Identity = 91/139 (65.47%), Postives = 107/139 (76.98%), Query Frame = 1
Query:    1 SSEWRFHRDIYVARADTNAVVHVHSPYATALACQRRDIPGFHYMIAKAGGDSIRCASYATFGTQALSDAALVALDARRACLLANHGMIALGADLERAVDLTREVEELAKQYALALSCGTPVLLSAAEMSAALERFKTYG 417
            SSEWRFHRD+Y AR +  A+VH H+P+ATALAC R DIP FHYMIA+ GG ++RCA+YATFGTQALSDAAL AL+ R ACLLANHG++  G DL +AVDL  E E L +QY  A   G PVLLS AEM   LE+F+TYG
Sbjct:   71 SSEWRFHRDLYAARPEAGAIVHAHAPFATALACLRADIPPFHYMIARFGGATVRCAAYATFGTQALSDAALAALEGRCACLLANHGLLVFGRDLRQAVDLAVEFESLCEQYWRARQVGRPVLLSDAEMEVVLEKFRTYG 209          
BLAST of mRNA_P-wetherbeei_contig55285.1.1 vs. uniprot
Match: A0A1G8FJ27_9RHOO (L-fuculose-phosphate aldolase n=1 Tax=Propionivibrio dicarboxylicus TaxID=83767 RepID=A0A1G8FJ27_9RHOO)

HSP 1 Score: 182 bits (462), Expect = 1.180e-55
Identity = 90/139 (64.75%), Postives = 105/139 (75.54%), Query Frame = 1
Query:    1 SSEWRFHRDIYVARADTNAVVHVHSPYATALACQRRDIPGFHYMIAKAGGDSIRCASYATFGTQALSDAALVALDARRACLLANHGMIALGADLERAVDLTREVEELAKQYALALSCGTPVLLSAAEMSAALERFKTYG 417
            SSEWRFHRDIY  R +  A++H HSP+AT LAC RRDIP FHYMIA+ GGDS+RCA YATFGTQALSDAALVAL  R  CLL NHGM+ LG DL +A+ L  E+EEL +QY  A   G PV+L A EM+  L++F TYG
Sbjct:   77 SSEWRFHRDIYAQRPEAGAILHAHSPFATTLACLRRDIPAFHYMIARFGGDSLRCADYATFGTQALSDAALVALTGRSGCLLGNHGMLVLGKDLPQALALGVELEELCEQYWRACQLGAPVVLDATEMAVVLDKFSTYG 215          
BLAST of mRNA_P-wetherbeei_contig55285.1.1 vs. uniprot
Match: UPI001AC684D7 (L-fuculose-phosphate aldolase n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=UPI001AC684D7)

HSP 1 Score: 182 bits (461), Expect = 1.270e-55
Identity = 90/139 (64.75%), Postives = 105/139 (75.54%), Query Frame = 1
Query:    1 SSEWRFHRDIYVARADTNAVVHVHSPYATALACQRRDIPGFHYMIAKAGGDSIRCASYATFGTQALSDAALVALDARRACLLANHGMIALGADLERAVDLTREVEELAKQYALALSCGTPVLLSAAEMSAALERFKTYG 417
            SSEWRFHRD+Y AR    A+VH H+P+ATALAC R DIP FHYMIA+ GG ++RCA+YATFGTQALSDAAL ALD R ACLLANHG++  G DL  A++L  E E L +QY  AL  G PVLL  AEM   LE+F+TYG
Sbjct:   71 SSEWRFHRDLYAARPQAGAIVHAHAPFATALACLRADIPPFHYMIARFGGSTVRCAAYATFGTQALSDAALEALDGRSACLLANHGLLVFGRDLRHALELAVEFESLCEQYWRALQVGRPVLLPDAEMETVLEKFRTYG 209          
BLAST of mRNA_P-wetherbeei_contig55285.1.1 vs. uniprot
Match: A0A536TLX5_9PROT (Class II aldolase n=4 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A536TLX5_9PROT)

HSP 1 Score: 182 bits (461), Expect = 1.480e-55
Identity = 94/139 (67.63%), Postives = 107/139 (76.98%), Query Frame = 1
Query:    1 SSEWRFHRDIYVARADTNAVVHVHSPYATALACQRRDIPGFHYMIAKAGGDSIRCASYATFGTQALSDAALVALDARRACLLANHGMIALGADLERAVDLTREVEELAKQYALALSCGTPVLLSAAEMSAALERFKTYG 417
            SSEWRFHRDIY AR +  A+VH HSP+AT++AC  RDIP FHYMIA AGG  IRCA+YATFGTQ LSD AL AL+ R+ACLLANHGMIA+GA L  A+ L  EVE LA+QY  AL  G P LLS AEM   LE+F+TYG
Sbjct:   73 SSEWRFHRDIYAARREVGAIVHAHSPFATSIACLGRDIPPFHYMIAVAGGKDIRCAAYATFGTQQLSDHALCALEGRKACLLANHGMIAVGASLTAALALAVEVEALAEQYWRALQIGPPNLLSDAEMETVLEKFRTYG 211          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig55285.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A080MBF9_9PROT9.660e-5966.19L-fuculose phosphate aldolase n=5 Tax=Candidatus A... [more]
A0A383X5R6_9RHOO4.600e-5868.35Class II aldolase n=1 Tax=Rhodocyclales bacterium ... [more]
A0A212JWS0_9PROT1.530e-5766.91L-fuculose-1-phosphate aldolase n=1 Tax=uncultured... [more]
C6XC28_METGS1.630e-5769.29Class II aldolase/adducin family protein n=5 Tax=M... [more]
A0A423PY64_9GAMM6.010e-5767.38Fuculose phosphate aldolase n=2 Tax=Salinisphaera ... [more]
A0A809R6X6_9PROT3.140e-5666.19Class II aldolase n=1 Tax=Candidatus Desulfobacill... [more]
UPI001AC3E10C4.460e-5665.47L-fuculose-phosphate aldolase n=1 Tax=Rhodocyclace... [more]
A0A1G8FJ27_9RHOO1.180e-5564.75L-fuculose-phosphate aldolase n=1 Tax=Propionivibr... [more]
UPI001AC684D71.270e-5564.75L-fuculose-phosphate aldolase n=1 Tax=Gammaproteob... [more]
A0A536TLX5_9PROT1.480e-5567.63Class II aldolase n=4 Tax=Betaproteobacteria bacte... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig55285contigP-wetherbeei_contig55285:5..427 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog582744.Msip34_0855
PFAMsAldolase_II
Model size423
Max annot lvl206350|Nitrosomonadales
KEGG rclassRC00603,RC00604
KEGG koko:K01628
KEGG ReactionR02262
KEGG Pathwayko00051,ko01120,map00051,map01120
Hectar predicted targeting categoryother localisation
Exons1
Evalue2.67e-58
EggNOG OGsCOG0235@1|root,COG0235@2|Bacteria,1MW7B@1224|Proteobacteria,2VQBC@28216|Betaproteobacteria,2KM3S@206350|Nitrosomonadales
EC4.1.2.17
DescriptionPFAM class II aldolase adducin family protein
Cds size423
COG categoryG
BRITEko00000,ko00001,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186824.214702-CDS-P-wetherbeei_contig55285:4..4271683186824.214702-CDS-P-wetherbeei_contig55285:4..427Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig55285 5..427 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig55285.1.1prot_P-wetherbeei_contig55285.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig55285 5..427 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig55285.1.1

>prot_P-wetherbeei_contig55285.1.1 ID=prot_P-wetherbeei_contig55285.1.1|Name=mRNA_P-wetherbeei_contig55285.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=141bp
SSEWRFHRDIYVARADTNAVVHVHSPYATALACQRRDIPGFHYMIAKAGG
DSIRCASYATFGTQALSDAALVALDARRACLLANHGMIALGADLERAVDL
TREVEELAKQYALALSCGTPVLLSAAEMSAALERFKTYGAR
back to top

mRNA from alignment at P-wetherbeei_contig55285:5..427+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig55285.1.1 ID=mRNA_P-wetherbeei_contig55285.1.1|Name=mRNA_P-wetherbeei_contig55285.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=423bp|location=Sequence derived from alignment at P-wetherbeei_contig55285:5..427+ (Phaeothamnion wetherbeei SAG_119_79)
TCGAGCGAATGGCGCTTCCACCGCGACATCTATGTCGCGCGTGCCGATAC TAATGCTGTAGTCCATGTGCATTCGCCCTATGCCACCGCACTGGCCTGCC AGCGCCGCGACATTCCCGGCTTTCACTACATGATAGCCAAGGCCGGTGGT GATTCGATTCGCTGCGCAAGCTATGCGACTTTCGGTACCCAGGCCTTGTC CGACGCGGCGCTGGTCGCGCTCGACGCGCGCCGTGCCTGTCTGCTCGCGA ACCATGGCATGATCGCACTAGGCGCTGATCTCGAGCGCGCGGTGGACCTG ACCCGCGAAGTGGAAGAACTCGCCAAGCAATATGCCTTGGCACTCTCTTG CGGCACGCCGGTATTGTTGAGCGCTGCGGAGATGAGCGCCGCCCTGGAAC GATTCAAGACTTACGGAGCCCGC
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig55285:5..427+

>mRNA_P-wetherbeei_contig55285.1.1 ID=mRNA_P-wetherbeei_contig55285.1.1|Name=mRNA_P-wetherbeei_contig55285.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=423bp|location=Sequence derived from alignment at P-wetherbeei_contig55285:5..427+ (Phaeothamnion wetherbeei SAG_119_79)
TCGAGCGAATGGCGCTTCCACCGCGACATCTATGTCGCGCGTGCCGATAC
TAATGCTGTAGTCCATGTGCATTCGCCCTATGCCACCGCACTGGCCTGCC
AGCGCCGCGACATTCCCGGCTTTCACTACATGATAGCCAAGGCCGGTGGT
GATTCGATTCGCTGCGCAAGCTATGCGACTTTCGGTACCCAGGCCTTGTC
CGACGCGGCGCTGGTCGCGCTCGACGCGCGCCGTGCCTGTCTGCTCGCGA
ACCATGGCATGATCGCACTAGGCGCTGATCTCGAGCGCGCGGTGGACCTG
ACCCGCGAAGTGGAAGAACTCGCCAAGCAATATGCCTTGGCACTCTCTTG
CGGCACGCCGGTATTGTTGAGCGCTGCGGAGATGAGCGCCGCCCTGGAAC
GATTCAAGACTTACGGAGCCCGC
back to top