mRNA_P-wetherbeei_contig55251.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig55251.1.1
Unique NamemRNA_P-wetherbeei_contig55251.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig55251.1.1 vs. uniprot
Match: A0A7W0SZD4_9CHLR (Group III truncated hemoglobin n=1 Tax=Chloroflexia bacterium TaxID=2448782 RepID=A0A7W0SZD4_9CHLR)

HSP 1 Score: 112 bits (281), Expect = 3.900e-30
Identity = 50/88 (56.82%), Postives = 61/88 (69.32%), Query Frame = 1
Query:    1 PIMCDFWEKVLFQRGTYGRDAFTVHARIHAVEPLTRRHFQAWEDLWHETVDDLFAGEKANLAKLHGSRMAGSIQRRLANATDGNLLQI 264
            P+MCDFWE VLFQ G Y  +AF VH  +H   PLT  HFQ W D+W  TVDDLFAG++A  AK+   R+AGSI+RRL   +DG +L I
Sbjct:   44 PVMCDFWETVLFQAGLYKGNAFNVHLEVHTQVPLTAMHFQRWLDIWEATVDDLFAGDRAIQAKVQAGRIAGSIRRRLERTSDGEVLAI 131          
BLAST of mRNA_P-wetherbeei_contig55251.1.1 vs. uniprot
Match: A0A354SBZ0_9ACTN (Uncharacterized protein n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A354SBZ0_9ACTN)

HSP 1 Score: 104 bits (259), Expect = 1.070e-26
Identity = 47/89 (52.81%), Postives = 58/89 (65.17%), Query Frame = 1
Query:    1 PIMCDFWEKVLFQRGTYGRDAFTVHARIHAVEPLTRRHFQAWEDLWHETVDDLFAGEKANLAKLHGSRMAGSIQRRLANATDGNLLQIR 267
            PIMCDFWE VLF+ G Y R+A  VH  +H   PLT  HF  W +LW  TVDD+F GEKA+LAKL  SR+A S+ RRL   +    + I+
Sbjct:   44 PIMCDFWETVLFRAGIYKRNALRVHTALHQKSPLTSEHFSRWLELWTGTVDDMFVGEKADLAKLQASRIAWSMSRRLMGESGSEFITIK 132          
BLAST of mRNA_P-wetherbeei_contig55251.1.1 vs. uniprot
Match: E3IW89_FRAIE (Uncharacterized protein n=2 Tax=Frankia TaxID=1854 RepID=E3IW89_FRAIE)

HSP 1 Score: 103 bits (258), Expect = 1.880e-26
Identity = 49/88 (55.68%), Postives = 59/88 (67.05%), Query Frame = 1
Query:    1 PIMCDFWEKVLFQRGTYGRDAFTVHARIHAVEPLTRRHFQAWEDLWHETVDDLFAGEKANLAKLHGSRMAGSIQRRLANATDGNLLQI 264
            PIMCDFWE VLFQ G Y R+A  VHA IHA  PL  +HF  W +LW  T+DDL+ GE+A  AKL  +R+AGS+ RRLA      L+ I
Sbjct:   53 PIMCDFWETVLFQAGAYHRNALHVHAAIHAKAPLGPQHFARWLELWAGTIDDLYQGERAERAKLQATRIAGSLCRRLAGEPASELVTI 140          
BLAST of mRNA_P-wetherbeei_contig55251.1.1 vs. uniprot
Match: UPI001931CAF6 (group III truncated hemoglobin n=1 Tax=unclassified Frankia TaxID=2632575 RepID=UPI001931CAF6)

HSP 1 Score: 103 bits (258), Expect = 1.880e-26
Identity = 48/88 (54.55%), Postives = 59/88 (67.05%), Query Frame = 1
Query:    1 PIMCDFWEKVLFQRGTYGRDAFTVHARIHAVEPLTRRHFQAWEDLWHETVDDLFAGEKANLAKLHGSRMAGSIQRRLANATDGNLLQI 264
            PIMCDFWE VLF+ GTY R+A   HA +HA  PLT  HF  W +LW  T+DDL+ GE A  AKL  +R+AGS++RRLA      L+ I
Sbjct:   53 PIMCDFWETVLFRAGTYHRNALRAHAALHARSPLTPPHFARWLELWAGTIDDLYQGELAERAKLQATRIAGSLRRRLAGEPASELVTI 140          
BLAST of mRNA_P-wetherbeei_contig55251.1.1 vs. uniprot
Match: A0A2U1FIQ3_9PSEU (Hemoglobin n=1 Tax=Actinomycetospora cinnamomea TaxID=663609 RepID=A0A2U1FIQ3_9PSEU)

HSP 1 Score: 102 bits (254), Expect = 6.100e-26
Identity = 47/88 (53.41%), Postives = 54/88 (61.36%), Query Frame = 1
Query:    1 PIMCDFWEKVLFQRGTYGRDAFTVHARIHAVEPLTRRHFQAWEDLWHETVDDLFAGEKANLAKLHGSRMAGSIQRRLANATDGNLLQI 264
            PIMCDFWE VLF+ G Y R+A   H  +HA+ PLT  HF  W  LW  TVDD FAGEKA LAK    R+A SI+RRL        + I
Sbjct:   45 PIMCDFWETVLFRAGLYRRNALRAHQDLHALSPLTTEHFDRWLSLWSATVDDFFAGEKAELAKTQAIRIASSIRRRLLGGAGSEFVTI 132          
BLAST of mRNA_P-wetherbeei_contig55251.1.1 vs. uniprot
Match: UPI0016790A0B (group III truncated hemoglobin n=1 Tax=Streptomyces fructofermentans TaxID=152141 RepID=UPI0016790A0B)

HSP 1 Score: 102 bits (253), Expect = 8.410e-26
Identity = 45/89 (50.56%), Postives = 57/89 (64.04%), Query Frame = 1
Query:    1 PIMCDFWEKVLFQRGTYGRDAFTVHARIHAVEPLTRRHFQAWEDLWHETVDDLFAGEKANLAKLHGSRMAGSIQRRLANATDGNLLQIR 267
            P+MCDFWE VLF+ G Y R+A  VH ++H + PL  +HF  W  LW  TVDDLF GEKA LAK    R+AGS+ RR+       L+ I+
Sbjct:   47 PVMCDFWETVLFRAGLYRRNALQVHVQLHRLAPLEAQHFSRWLSLWSGTVDDLFTGEKAELAKRQAERIAGSLLRRVNGTDSSELITIQ 135          
BLAST of mRNA_P-wetherbeei_contig55251.1.1 vs. uniprot
Match: A0A7G6YES5_9MICO (Group III truncated hemoglobin n=2 Tax=Leifsonia shinshuensis TaxID=150026 RepID=A0A7G6YES5_9MICO)

HSP 1 Score: 102 bits (254), Expect = 9.670e-26
Identity = 47/81 (58.02%), Postives = 57/81 (70.37%), Query Frame = 1
Query:    1 PIMCDFWEKVLFQRGTYGRDAFTVHARIHAVEPLTRRHFQAWEDLWHETVDDLFAGEKANLAKLHGSRMAGSIQRRLANAT 243
            PIMCDFWE VLF+ G Y R+A  VH  +HA+ PL   HF  W  +W+  VDDLFAGEKA LAK+   R+AGSI RRLA ++
Sbjct:   61 PIMCDFWETVLFRAGVYRRNALQVHRDLHALTPLLPEHFDRWLLVWNGAVDDLFAGEKAQLAKVQADRIAGSIGRRLAGSS 141          
BLAST of mRNA_P-wetherbeei_contig55251.1.1 vs. uniprot
Match: A0A7K0R1X0_9ACTN (Uncharacterized protein n=2 Tax=root TaxID=1 RepID=A0A7K0R1X0_9ACTN)

HSP 1 Score: 100 bits (250), Expect = 2.270e-25
Identity = 47/89 (52.81%), Postives = 58/89 (65.17%), Query Frame = 1
Query:    1 PIMCDFWEKVLFQRGTYGRDAFTVHARIHAVEPLTRRHFQAWEDLWHETVDDLFAGEKANLAKLHGSRMAGSIQRRLANATDGNLLQIR 267
            PIMCDFWE VLF+ G Y R+A  VHA +H    LT  HF  W D+W  TVD +FAGEKA+LAKL  +R+A S+ RRL   +    + IR
Sbjct:   45 PIMCDFWETVLFRAGKYQRNALQVHAALHRKSALTPEHFGRWLDIWTATVDAMFAGEKADLAKLQATRIAWSMSRRLMGESGSEFVTIR 133          
BLAST of mRNA_P-wetherbeei_contig55251.1.1 vs. uniprot
Match: A0A4R8UGX9_9MICO (Group III truncated hemoglobin n=1 Tax=Cryobacterium sp. Sr47 TaxID=1259199 RepID=A0A4R8UGX9_9MICO)

HSP 1 Score: 100 bits (250), Expect = 3.410e-25
Identity = 48/90 (53.33%), Postives = 57/90 (63.33%), Query Frame = 1
Query:    1 PIMCDFWEKVLFQRGTYGRDAFTVHARIHAVEPLTRRHFQAWEDLWHETVDDLFAGEKANLAKLHGSRMAGSIQRRLANATDGNLLQIRV 270
            PI+CDFWE VLFQ G Y R+A  VH  ++A  PL   HF+ W  LW  TVD  FAGEKA LAK  G R+AGSIQRRL   +  +   +R 
Sbjct:   48 PIICDFWETVLFQAGLYRRNALQVHLSLNARAPLGAPHFERWLALWSATVDSNFAGEKAELAKTQGGRIAGSIQRRLQGGSGSDFESLRT 137          
BLAST of mRNA_P-wetherbeei_contig55251.1.1 vs. uniprot
Match: UPI0010AB06E8 (group III truncated hemoglobin n=1 Tax=Agromyces sp. H66 TaxID=2529859 RepID=UPI0010AB06E8)

HSP 1 Score: 99.4 bits (246), Expect = 9.940e-25
Identity = 46/77 (59.74%), Postives = 52/77 (67.53%), Query Frame = 1
Query:    1 PIMCDFWEKVLFQRGTYGRDAFTVHARIHAVEPLTRRHFQAWEDLWHETVDDLFAGEKANLAKLHGSRMAGSIQRRL 231
            PIMCDFWE VLF  G Y R+A  VH  ++A  PL   HF  W +LW  TVDDLF GEKA LAKL   R+AGSI RR+
Sbjct:   46 PIMCDFWETVLFNAGLYRRNALQVHLALNARHPLLPEHFARWLELWVRTVDDLFRGEKAELAKLQAERIAGSISRRM 122          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig55251.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7W0SZD4_9CHLR3.900e-3056.82Group III truncated hemoglobin n=1 Tax=Chloroflexi... [more]
A0A354SBZ0_9ACTN1.070e-2652.81Uncharacterized protein n=1 Tax=Actinomycetia bact... [more]
E3IW89_FRAIE1.880e-2655.68Uncharacterized protein n=2 Tax=Frankia TaxID=1854... [more]
UPI001931CAF61.880e-2654.55group III truncated hemoglobin n=1 Tax=unclassifie... [more]
A0A2U1FIQ3_9PSEU6.100e-2653.41Hemoglobin n=1 Tax=Actinomycetospora cinnamomea Ta... [more]
UPI0016790A0B8.410e-2650.56group III truncated hemoglobin n=1 Tax=Streptomyce... [more]
A0A7G6YES5_9MICO9.670e-2658.02Group III truncated hemoglobin n=2 Tax=Leifsonia s... [more]
A0A7K0R1X0_9ACTN2.270e-2552.81Uncharacterized protein n=2 Tax=root TaxID=1 RepID... [more]
A0A4R8UGX9_9MICO3.410e-2553.33Group III truncated hemoglobin n=1 Tax=Cryobacteri... [more]
UPI0010AB06E89.940e-2559.74group III truncated hemoglobin n=1 Tax=Agromyces s... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig55251contigP-wetherbeei_contig55251:246..524 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog298654.FraEuI1c_0853
Model size279
Max annot lvl201174|Actinobacteria
KEGG koko:K06886
Hectar predicted targeting categoryother localisation
Exons1
Evalue2.65e-25
EggNOG OGsCOG2346@1|root,COG2346@2|Bacteria,2IJM0@201174|Actinobacteria
DescriptionCOG2346, Truncated hemoglobins
Cds size273
COG categoryS
BRITEko00000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186824.071491-CDS-P-wetherbeei_contig55251:245..5181683186824.071491-CDS-P-wetherbeei_contig55251:245..518Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig55251 246..518 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186824.0814881-UTR-P-wetherbeei_contig55251:518..5241683186824.0814881-UTR-P-wetherbeei_contig55251:518..524Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig55251 519..524 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig55251.1.1prot_P-wetherbeei_contig55251.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig55251 246..518 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig55251.1.1

>prot_P-wetherbeei_contig55251.1.1 ID=prot_P-wetherbeei_contig55251.1.1|Name=mRNA_P-wetherbeei_contig55251.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=91bp
MCDFWEKVLFQRGTYGRDAFTVHARIHAVEPLTRRHFQAWEDLWHETVDD
LFAGEKANLAKLHGSRMAGSIQRRLANATDGNLLQIRVGR*
back to top

mRNA from alignment at P-wetherbeei_contig55251:246..524-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig55251.1.1 ID=mRNA_P-wetherbeei_contig55251.1.1|Name=mRNA_P-wetherbeei_contig55251.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=279bp|location=Sequence derived from alignment at P-wetherbeei_contig55251:246..524- (Phaeothamnion wetherbeei SAG_119_79)
CCGATCATGTGCGACTTCTGGGAGAAGGTGCTCTTCCAGCGGGGGACGTA TGGCCGGGACGCCTTCACGGTCCACGCCCGCATCCACGCGGTGGAGCCGC TGACCCGCCGCCACTTCCAGGCGTGGGAGGACCTGTGGCACGAGACCGTG GACGACCTCTTCGCGGGCGAGAAGGCGAACCTGGCGAAGCTGCATGGCTC CCGGATGGCGGGGTCGATCCAGCGGCGGCTGGCGAACGCCACGGACGGCA ATCTGCTCCAGATCCGCGTCGGGCGCTGA
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig55251:246..524-

>mRNA_P-wetherbeei_contig55251.1.1 ID=mRNA_P-wetherbeei_contig55251.1.1|Name=mRNA_P-wetherbeei_contig55251.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=273bp|location=Sequence derived from alignment at P-wetherbeei_contig55251:246..524- (Phaeothamnion wetherbeei SAG_119_79)
ATGTGCGACTTCTGGGAGAAGGTGCTCTTCCAGCGGGGGACGTATGGCCG
GGACGCCTTCACGGTCCACGCCCGCATCCACGCGGTGGAGCCGCTGACCC
GCCGCCACTTCCAGGCGTGGGAGGACCTGTGGCACGAGACCGTGGACGAC
CTCTTCGCGGGCGAGAAGGCGAACCTGGCGAAGCTGCATGGCTCCCGGAT
GGCGGGGTCGATCCAGCGGCGGCTGGCGAACGCCACGGACGGCAATCTGC
TCCAGATCCGCGTCGGGCGCTGA
back to top