mRNA_P-wetherbeei_contig5525.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig5525.1.1
Unique NamemRNA_P-wetherbeei_contig5525.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
[Close]
BLAST of mRNA_P-wetherbeei_contig5525.1.1 vs. uniprot
Match: A0A836CQ15_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CQ15_9STRA)

HSP 1 Score: 60.8 bits (146), Expect = 3.700e-6
Identity = 39/95 (41.05%), Postives = 51/95 (53.68%), Query Frame = 2 
Query:  593 GLATLMALAWTGYGPMPAELRLFAFFTPVIAIVVYRSTVGETIAEWMGAMQGAVFGMVITAVARAICGTGSVAIGFGVFVSVFLIVRARRLTSIG 877
            GLA   ++AW   GP+   L    FF+PV+AIVV   T G TIA  +G + GA+ G     + R I        G  +F+  FLIVR RRL S+G
Sbjct:   27 GLAAAASIAWAEVGPIRNPLN---FFSPVVAIVVTLDTAGGTIAASLGCLHGALSGAFFAFLIRLIADQNCWVAGLLMFIGFFLIVRRRRLNSLG 118
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5525.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A836CQ15_9STRA3.700e-641.05Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig5525contigP-wetherbeei_contig5525:1232..3024 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1297
Hectar predicted targeting categoryother localisation
Exons3
Cds size777
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186824.0069818-UTR-P-wetherbeei_contig5525:1231..14321683186824.0069818-UTR-P-wetherbeei_contig5525:1231..1432Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig5525 1232..1432 -
1683186824.0420713-UTR-P-wetherbeei_contig5525:2705..30241683186824.0420713-UTR-P-wetherbeei_contig5525:2705..3024Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig5525 2706..3024 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186824.016058-CDS-P-wetherbeei_contig5525:1432..16611683186824.016058-CDS-P-wetherbeei_contig5525:1432..1661Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5525 1433..1661 -
1683186824.0244212-CDS-P-wetherbeei_contig5525:1754..18871683186824.0244212-CDS-P-wetherbeei_contig5525:1754..1887Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5525 1755..1887 -
1683186824.0331862-CDS-P-wetherbeei_contig5525:2290..27051683186824.0331862-CDS-P-wetherbeei_contig5525:2290..2705Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5525 2291..2705 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig5525.1.1prot_P-wetherbeei_contig5525.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig5525 1433..2705 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig5525.1.1

>prot_P-wetherbeei_contig5525.1.1 ID=prot_P-wetherbeei_contig5525.1.1|Name=mRNA_P-wetherbeei_contig5525.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=259bp
MVSCRVRLYLFPLLICRRKPLSNMVPGNEAVSTFSFLAPSCFLHRATHAF
VSASHSNRTLACPQRVLLRLHPRRVLFHDTSSLIASAVAAQGLATLMALA
WTGYGPMPAELRLFAFFTPVIAIVVYRSTVGETIAEWMGAMQGAVFGMVI
TAVARAICGTGSVAIGFGVFVSVFLIVRARRLTSIGAFLSFPFILFLTLS
RCFFVFAPSVRTRSVKGCPSFPLRPRDGWGCSRMRTVAFLNARSRHLIQI
PRFPATAL*
back to top

mRNA from alignment at P-wetherbeei_contig5525:1232..3024-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig5525.1.1 ID=mRNA_P-wetherbeei_contig5525.1.1|Name=mRNA_P-wetherbeei_contig5525.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1793bp|location=Sequence derived from alignment at P-wetherbeei_contig5525:1232..3024- (Phaeothamnion wetherbeei SAG_119_79)
AAGCGGCGAAAGAGGTCGACTCGAGGGACTCCGACCTACAAACCAGAGAC
AGATTGGCGAAGAAATGTCGAGGGAGGGCTGCGGACGGTGAGAGGTTCCC
TCTTTTGTATCTCTTTCCGTTTCAAGGACTTTCCCACCATGTTTGACGAA
CCTATCGTTCTCTGCATATTATACTTTCTTGCCACGCAATCTCTGAAAAG
TGATCGGCGCTGCGGAAAACCCTTTTTTCCATCGATAGTGATAGAAACGA
TAATTTGTCATTTCTGAATGATCGACGGATTCTTGGGCGACATCCCAGCA
GAGAAGCAGATGCGTGTAAATGGTTTCATGCAGAGTGAGACTTTACCTCT
TCCCCTTGCTCATCTGCCGCCGAAAACCTCTCTCTAACATGGTGCCCGGC
AACGAAGCCGTTTCCACTTTCTCCTTCCTCGCCCCGTCGTGCTTTTTGCA
TCGCGCGACGCATGCTTTTGTGTCCGCATCGCACTCAAATCGCACCCTCG
CGTGTCCGCAACGTGTCCTTTTGCGATTGCATCCACGACGCGTCCTCTTC
CATGACACATCCTCCTTGATCGCATCCGCGGTGGCGGCGCAGGGCCTGGC
GACGCTGATGGCCCTGGCGTGGACGGGCTACGGCCCAATGCCGGCGGAGC
TGCGCCTCTTTGCCTTCTTCACCCCCGTCATCGCCATCGTCGTCTACCGG
AGCACCGTCGGCGAGACCATCGCCGAGTGGATGGTGAGGAAGAAGGTTCT
TCATTCGTGCGTCCATTTCCTCCAAATTTTGTTTCTGGCCAGTCGCGTCG
GTGCTTTGGCGCTGAAGCTGCCGAACCCGCCGCTGGCTGGCGGGATTGGT
GGCCTGTACATACGGGTACTCGCATGCCTACCATTTTGGCGACCGTATGG
GGGCGGTATGAGGGGCTAGGCCGCCGCAAAGATCGGCCGGCCGGCCATGC
TCTCCTCCCGCTTTTTCCTGCTCCTCTTTGCGGCATTGGACACTGCCGAT
TCCTGTGCTGCCCGCTGCCGCCGCGCAATGCCGCCATTGCCACTCAACAC
CGCCGCCTCTGTCGCTCGCGACGCCTCTGCCGCCGCCGCCACCGTTCCCG
TTCCGTTCCGCCGGCATCACTACGCAAACAAAACAGGGGGCGATGCAGGG
GGCAGTCTTCGGCATGGTCATCACCGCAGTCGCGCGGGCGATCTGCGGGA
CAGGCAGCGTCGCCATCGGCTTCGGCGTCTTCGTGTCCGTGTTCCTCATC
GTGCGGGCGCGCCGCCTTACCTCCATCGGTGTCGTCGAGGATCTTGCGGA
GCTGGGCGAGATGGCCAGGCCGCAGCTAATGGTTGATGTCNNNNNNNNNN
CGCGCCGCCTTACCTCCATCGGTGCATTTCTTTCGTTTCCTTTCATTCTT
TTTTTGACTTTATCCAGATGCTTTTTTGTCTTTGCGCCCTCTGTTCGAAC
TCGCTCTGTGAAAGGATGTCCATCATTTCCATTGCGTCCGAGGGACGGCT
GGGGGTGTTCTCGGATGAGAACCGTGGCCTTCCTGAATGCCCGAAGTAGG
CACTTGATTCAAATCCCACGATTTCCTGCGACTGCCCTGTAAACGTTGTG
CATCACCATTGGCAATCCATATGTGGCATGCGGCGGCGTCGGTCTCCTCC
TGTGGCACGGGCTGCGGCGGCGGTGCCGATGGTGGCGGCGACGACCGCGC
TTCAATGCAACTGCAAAATGGCACGAAACACACGAATGAAACAAATGAAC
GAAACAGCGCGCAAGCTGGGGTGCACAGTGGTGCTGATCGGCC
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig5525:1232..3024-

>mRNA_P-wetherbeei_contig5525.1.1 ID=mRNA_P-wetherbeei_contig5525.1.1|Name=mRNA_P-wetherbeei_contig5525.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=777bp|location=Sequence derived from alignment at P-wetherbeei_contig5525:1232..3024- (Phaeothamnion wetherbeei SAG_119_79)
ATGGTTTCATGCAGAGTGAGACTTTACCTCTTCCCCTTGCTCATCTGCCG
CCGAAAACCTCTCTCTAACATGGTGCCCGGCAACGAAGCCGTTTCCACTT
TCTCCTTCCTCGCCCCGTCGTGCTTTTTGCATCGCGCGACGCATGCTTTT
GTGTCCGCATCGCACTCAAATCGCACCCTCGCGTGTCCGCAACGTGTCCT
TTTGCGATTGCATCCACGACGCGTCCTCTTCCATGACACATCCTCCTTGA
TCGCATCCGCGGTGGCGGCGCAGGGCCTGGCGACGCTGATGGCCCTGGCG
TGGACGGGCTACGGCCCAATGCCGGCGGAGCTGCGCCTCTTTGCCTTCTT
CACCCCCGTCATCGCCATCGTCGTCTACCGGAGCACCGTCGGCGAGACCA
TCGCCGAGTGGATGGGGGCGATGCAGGGGGCAGTCTTCGGCATGGTCATC
ACCGCAGTCGCGCGGGCGATCTGCGGGACAGGCAGCGTCGCCATCGGCTT
CGGCGTCTTCGTGTCCGTGTTCCTCATCGTGCGGGCGCGCCGCCTTACCT
CCATCGGTGCATTTCTTTCGTTTCCTTTCATTCTTTTTTTGACTTTATCC
AGATGCTTTTTTGTCTTTGCGCCCTCTGTTCGAACTCGCTCTGTGAAAGG
ATGTCCATCATTTCCATTGCGTCCGAGGGACGGCTGGGGGTGTTCTCGGA
TGAGAACCGTGGCCTTCCTGAATGCCCGAAGTAGGCACTTGATTCAAATC
CCACGATTTCCTGCGACTGCCCTGTAA
back to top