mRNA_P-wetherbeei_contig55223.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig55223.1.1
Unique NamemRNA_P-wetherbeei_contig55223.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig55223.1.1 vs. uniprot
Match: H3H977_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H977_PHYRM)

HSP 1 Score: 92.0 bits (227), Expect = 2.300e-21
Identity = 45/99 (45.45%), Postives = 62/99 (62.63%), Query Frame = 1 
Query:    1 MREIRYRHAVGHLLYLTMVTRFDLSNVVRELSRHMSYPSPTHWGAVHWCMNYVSGTKAKKLHFGPFPCESPLKLSGYSDSDWAGDTDTRRFTTGYAFVL 297
            M+ + YR AVG L+YL + TR DL+  V  LS+  + P PTHW A+   + Y+  T    L F     E  L + GYSD+DWAGDT++RR T+GYAF++
Sbjct:   12 MKNVPYRSAVGALMYLMVATRPDLAAAVGVLSQFSADPCPTHWQALKRVLRYLQATPTHGLEFSR---EDSLGMCGYSDADWAGDTESRRSTSGYAFMM 107
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BLAST of mRNA_P-wetherbeei_contig55223.1.1 vs. uniprot
Match: A0A803M3W2_CHEQI (Uncharacterized protein n=1 Tax=Chenopodium quinoa TaxID=63459 RepID=A0A803M3W2_CHEQI)

HSP 1 Score: 89.7 bits (221), Expect = 2.320e-20
Identity = 44/99 (44.44%), Postives = 59/99 (59.60%), Query Frame = 1 
Query:    1 MREIRYRHAVGHLLYLTMVTRFDLSNVVRELSRHMSYPSPTHWGAVHWCMNYVSGTKAKKLHFGPFPCESPLKLSGYSDSDWAGDTDTRRFTTGYAFVL 297
            M  + Y  A+G L+Y  + TR D+S  V  +SR M+ P   HW AV W + Y+ GT   +L FG   C+    +SG+ DSD+AGD D RR TTGYAF +
Sbjct:   87 MDNVPYASAIGSLMYAMVCTRPDISQAVGVVSRFMANPGKIHWEAVKWILRYLKGTIDTRLCFGGDNCQ----ISGFVDSDYAGDLDRRRSTTGYAFTI 181
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BLAST of mRNA_P-wetherbeei_contig55223.1.1 vs. uniprot
Match: A0A087G8H9_ARAAL (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Arabis alpina TaxID=50452 RepID=A0A087G8H9_ARAAL)

HSP 1 Score: 92.4 bits (228), Expect = 4.280e-20
Identity = 45/99 (45.45%), Postives = 58/99 (58.59%), Query Frame = 1 
Query:    1 MREIRYRHAVGHLLYLTMVTRFDLSNVVRELSRHMSYPSPTHWGAVHWCMNYVSGTKAKKLHFGPFPCESPLKLSGYSDSDWAGDTDTRRFTTGYAFVL 297
            M ++ Y  AV  L+Y  + TR DL+  V E+S++MS P   HW  V W + Y+ GT    L FG   C + L   GY DSD+AGD D RR+TTGY F L
Sbjct:  150 MAQVPYASAVRCLMYAMVCTRPDLAQAVSEVSKYMSNPGRDHWNDVKWILRYLKGTAEYGLRFGDLKCVAVL---GYVDSDYAGDLDNRRYTTGYVFTL 245
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BLAST of mRNA_P-wetherbeei_contig55223.1.1 vs. uniprot
Match: H3G656_PHYRM (Uncharacterized protein n=3 Tax=Phytophthora ramorum TaxID=164328 RepID=H3G656_PHYRM)

HSP 1 Score: 89.7 bits (221), Expect = 5.350e-20
Identity = 44/99 (44.44%), Postives = 61/99 (61.62%), Query Frame = 1 
Query:    1 MREIRYRHAVGHLLYLTMVTRFDLSNVVRELSRHMSYPSPTHWGAVHWCMNYVSGTKAKKLHFGPFPCESPLKLSGYSDSDWAGDTDTRRFTTGYAFVL 297
            M+ + YR AVG L+YL + TR DL+  V  LS+  + P PTHW A+   + Y+  T    L F     E  L + GYSD+DWAGD ++RR T+GYAF++
Sbjct:    2 MKNVPYRSAVGALMYLMVATRPDLAAAVGVLSQFSADPCPTHWQALKRVLRYLQATPTHGLEFSR---EDSLGMCGYSDADWAGDIESRRSTSGYAFMM 97
[Close]
BLAST of mRNA_P-wetherbeei_contig55223.1.1 vs. uniprot
Match: A0A087HHB1_ARAAL (Uncharacterized protein n=1 Tax=Arabis alpina TaxID=50452 RepID=A0A087HHB1_ARAAL)

HSP 1 Score: 87.4 bits (215), Expect = 8.580e-20
Identity = 45/100 (45.00%), Postives = 57/100 (57.00%), Query Frame = 1 
Query:    1 MREIRYRHAVGHLLYLTMVTRFDLSNVVRELSRHMSYPSPTHWGAVHWCMNYVSGTKAKKLHFGPFPCESPLKLSGYSDSDWAGDTDTRRFTTGYAFVLG 300
            M ++ Y   VG L+Y  + TR DL+  V  +SR M  P   HW AV     Y+ GT    L +G    E+P  ++GYSDSD+AGD DTRR  TGY F LG
Sbjct:   31 MSQVPYASDVGSLMYAMVCTRPDLAQAVSVVSRFMGQPGKEHWLAVKRIFRYLKGTSDVGLMYGG---ETPCLVTGYSDSDYAGDVDTRRSVTGYVFTLG 127
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BLAST of mRNA_P-wetherbeei_contig55223.1.1 vs. uniprot
Match: A0A329R6N8_9STRA (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Phytophthora cactorum TaxID=29920 RepID=A0A329R6N8_9STRA)

HSP 1 Score: 89.7 bits (221), Expect = 9.710e-20
Identity = 44/99 (44.44%), Postives = 61/99 (61.62%), Query Frame = 1 
Query:    1 MREIRYRHAVGHLLYLTMVTRFDLSNVVRELSRHMSYPSPTHWGAVHWCMNYVSGTKAKKLHFGPFPCESPLKLSGYSDSDWAGDTDTRRFTTGYAFVL 297
            M+ + YR AVG L+YL +VTR DL+  V  LS+  + P PTHW A+   + Y+  T    L F     E    + GYSD+DWAGD ++RR T+GYAF++
Sbjct:  153 MKNVPYRSAVGGLMYLMVVTRPDLAAAVGVLSQFAADPCPTHWQALKCVLRYLQATPTHGLEFSR---EDSFGVCGYSDADWAGDIESRRSTSGYAFMM 248
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BLAST of mRNA_P-wetherbeei_contig55223.1.1 vs. uniprot
Match: A0A6A2XKJ1_HIBSY (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Hibiscus syriacus TaxID=106335 RepID=A0A6A2XKJ1_HIBSY)

HSP 1 Score: 92.4 bits (228), Expect = 9.720e-20
Identity = 45/100 (45.00%), Postives = 63/100 (63.00%), Query Frame = 1 
Query:    1 MREIRYRHAVGHLLYLTMVTRFDLSNVVRELSRHMSYPSPTHWGAVHWCMNYVSGTKAKKLHFGPFPCESPLKLSGYSDSDWAGDTDTRRFTTGYAFVLG 300
            M ++ Y +AVG L+Y  + T  DL++VV ++ ++MS P   HW AV W   Y+ GT   ++ FG    ++PL + GY DSD+AGD D RR TTGY F LG
Sbjct:  265 MAKVPYSNAVGWLMYAMVCTHLDLAHVVSQVCKYMSKPGKQHWEAVKWIFRYLKGTVGHEIVFGS-QRDNPLVV-GYVDSDYAGDLDNRRSTTGYVFTLG 362
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BLAST of mRNA_P-wetherbeei_contig55223.1.1 vs. uniprot
Match: A0A6A4ZBJ3_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A6A4ZBJ3_9STRA)

HSP 1 Score: 90.5 bits (223), Expect = 9.840e-20
Identity = 47/99 (47.47%), Postives = 62/99 (62.63%), Query Frame = 1 
Query:    1 MREIRYRHAVGHLLYLTMVTRFDLSNVVRELSRHMSYPSPTHWGAVHWCMNYVSGTKAKKLHFGPFPCESPLKLSGYSDSDWAGDTDTRRFTTGYAFVL 297
            M ++ YR+AVG L+YL + TR DL+  V  LS+  + P PTHW A+     Y+ GTK    H   F   S   L GYSD+DWAGD +TRR T+GYAF++
Sbjct:   55 MAKVPYRNAVGCLMYLMVGTRPDLAAAVGVLSQFAADPCPTHWQALKRVFRYIQGTKT---HGIVFQAGSEDGLQGYSDADWAGDIETRRSTSGYAFMM 150
[Close]
BLAST of mRNA_P-wetherbeei_contig55223.1.1 vs. uniprot
Match: H3H910_PHYRM (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H910_PHYRM)

HSP 1 Score: 90.1 bits (222), Expect = 9.950e-20
Identity = 44/99 (44.44%), Postives = 62/99 (62.63%), Query Frame = 1 
Query:    1 MREIRYRHAVGHLLYLTMVTRFDLSNVVRELSRHMSYPSPTHWGAVHWCMNYVSGTKAKKLHFGPFPCESPLKLSGYSDSDWAGDTDTRRFTTGYAFVL 297
            M+ + YR AVG L+YL + TR DL+  V  LS+  + P PTHW A+   + Y+  T    L F     E+ L + GYSD+DWAGD ++RR T+GYAF++
Sbjct:  168 MKNVPYRSAVGALMYLMVATRPDLAAAVGVLSQFSADPCPTHWQALKRVLRYLQATPTHGLEFSR---EASLGMCGYSDADWAGDIESRRSTSGYAFMM 263
[Close]
BLAST of mRNA_P-wetherbeei_contig55223.1.1 vs. uniprot
Match: A0A2N9HZ30_FAGSY (Integrase catalytic domain-containing protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9HZ30_FAGSY)

HSP 1 Score: 92.0 bits (227), Expect = 1.360e-19
Identity = 44/100 (44.00%), Postives = 61/100 (61.00%), Query Frame = 1 
Query:    1 MREIRYRHAVGHLLYLTMVTRFDLSNVVRELSRHMSYPSPTHWGAVHWCMNYVSGTKAKKLHFGPFPCESPLKLSGYSDSDWAGDTDTRRFTTGYAFVLG 300
            M ++ Y  A+G L+Y  + TR D+++ V  +SR+MS P   HW AV W + Y+ GT    L F      + +KL+GY DSD AGD DTR+ TTGY + LG
Sbjct:  762 MSKVPYASAIGSLMYAMVCTRPDIAHAVGVVSRYMSNPGKQHWEAVKWILRYLKGTLGTSLCF----TGADMKLTGYVDSDLAGDVDTRKSTTGYVYTLG 857
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig55223.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
H3H977_PHYRM2.300e-2145.45Uncharacterized protein n=1 Tax=Phytophthora ramor... [more]
A0A803M3W2_CHEQI2.320e-2044.44Uncharacterized protein n=1 Tax=Chenopodium quinoa... [more]
A0A087G8H9_ARAAL4.280e-2045.45Reverse transcriptase Ty1/copia-type domain-contai... [more]
H3G656_PHYRM5.350e-2044.44Uncharacterized protein n=3 Tax=Phytophthora ramor... [more]
A0A087HHB1_ARAAL8.580e-2045.00Uncharacterized protein n=1 Tax=Arabis alpina TaxI... [more]
A0A329R6N8_9STRA9.710e-2044.44Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6A2XKJ1_HIBSY9.720e-2045.00Retrovirus-related Pol polyprotein from transposon... [more]
A0A6A4ZBJ3_9STRA9.840e-2047.47Uncharacterized protein (Fragment) n=1 Tax=Aphanom... [more]
H3H910_PHYRM9.950e-2044.44Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A2N9HZ30_FAGSY1.360e-1944.00Integrase catalytic domain-containing protein n=1 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig55223contigP-wetherbeei_contig55223:64..363 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog50452.A0A087G8H9
PFAMsRVT_2
Model size300
Max annot lvl33090|Viridiplantae
Hectar predicted targeting categoryother localisation
Exons1
Evalue7.02e-21
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,37THH@33090|Viridiplantae
DescriptionMitochondrial protein
Cds size300
COG categoryL
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186823.7304716-CDS-P-wetherbeei_contig55223:63..3631683186823.7304716-CDS-P-wetherbeei_contig55223:63..363Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig55223 64..363 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig55223.1.1prot_P-wetherbeei_contig55223.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig55223 64..363 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig55223.1.1

>prot_P-wetherbeei_contig55223.1.1 ID=prot_P-wetherbeei_contig55223.1.1|Name=mRNA_P-wetherbeei_contig55223.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=100bp
MREIRYRHAVGHLLYLTMVTRFDLSNVVRELSRHMSYPSPTHWGAVHWCM
NYVSGTKAKKLHFGPFPCESPLKLSGYSDSDWAGDTDTRRFTTGYAFVLG
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mRNA from alignment at P-wetherbeei_contig55223:64..363-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig55223.1.1 ID=mRNA_P-wetherbeei_contig55223.1.1|Name=mRNA_P-wetherbeei_contig55223.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=300bp|location=Sequence derived from alignment at P-wetherbeei_contig55223:64..363- (Phaeothamnion wetherbeei SAG_119_79)
ATGCGCGAAATCAGATATCGCCATGCTGTCGGTCACCTGCTGTACCTTAC
CATGGTGACCCGCTTCGACCTCTCGAACGTCGTCCGTGAACTTTCCAGAC
ATATGTCTTACCCTAGCCCCACCCACTGGGGCGCCGTCCACTGGTGCATG
AACTATGTCAGCGGCACCAAAGCCAAGAAATTACACTTTGGCCCCTTCCC
CTGTGAAAGCCCACTAAAACTCAGTGGCTACAGCGACTCCGACTGGGCCG
GTGACACGGACACCCGGCGTTTTACTACGGGCTACGCTTTTGTCCTCGGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig55223:64..363-

>mRNA_P-wetherbeei_contig55223.1.1 ID=mRNA_P-wetherbeei_contig55223.1.1|Name=mRNA_P-wetherbeei_contig55223.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=300bp|location=Sequence derived from alignment at P-wetherbeei_contig55223:64..363- (Phaeothamnion wetherbeei SAG_119_79)
ATGCGCGAAATCAGATATCGCCATGCTGTCGGTCACCTGCTGTACCTTAC
CATGGTGACCCGCTTCGACCTCTCGAACGTCGTCCGTGAACTTTCCAGAC
ATATGTCTTACCCTAGCCCCACCCACTGGGGCGCCGTCCACTGGTGCATG
AACTATGTCAGCGGCACCAAAGCCAAGAAATTACACTTTGGCCCCTTCCC
CTGTGAAAGCCCACTAAAACTCAGTGGCTACAGCGACTCCGACTGGGCCG
GTGACACGGACACCCGGCGTTTTACTACGGGCTACGCTTTTGTCCTCGGA
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