mRNA_P-wetherbeei_contig55202.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig55202.1.1
Unique NamemRNA_P-wetherbeei_contig55202.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig55202.1.1 vs. uniprot
Match: A0A518UBR9_9PROT (ABC transporter permease n=1 Tax=Denitratisoma sp. DHT3 TaxID=1981880 RepID=A0A518UBR9_9PROT)

HSP 1 Score: 302 bits (773), Expect = 1.390e-101
Identity = 144/175 (82.29%), Postives = 163/175 (93.14%), Query Frame = 1 
Query:    1 VALATTLICLALAYPLALFIARSPKRHRDILVLLVILPFASNFLIRVYAWIMILGPLNLLYTPYAVLIGMVYVHLPFVILPLYTNLEKHDPVLLDAAQDLGAGAWQRFWRVTFPLSLPGVFSGSALVFIPVLGMFAVPELLGGTGDLLVGNLIKEQFLDNRDWPFGATLSIMLTI 525
            VAL TTL+C+ LAYPLA  IARSPK  RD+LVLLV+LPFASNFL+R+YAWIM+LGP+NLLYTP+AV+ GMVYVHLPF++LPLYTNLEKHDP LL+AA+DLGA AW RFWR+TFPLSLPG+FSGSALVFIPVLGMFAVPELLGGTGD+L+GNLIKEQFLDNRDWP G+ LSIMLTI
Sbjct:   75 VALVTTLLCILLAYPLAWLIARSPKARRDLLVLLVVLPFASNFLVRIYAWIMLLGPVNLLYTPFAVIAGMVYVHLPFMVLPLYTNLEKHDPALLEAARDLGANAWTRFWRITFPLSLPGIFSGSALVFIPVLGMFAVPELLGGTGDILIGNLIKEQFLDNRDWPLGSALSIMLTI 249
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BLAST of mRNA_P-wetherbeei_contig55202.1.1 vs. uniprot
Match: A0A6S6YHY4_9PROT (Polyamine transporter subunit membrane component of ABC superfamily n=1 Tax=Denitratisoma oestradiolicum TaxID=311182 RepID=A0A6S6YHY4_9PROT)

HSP 1 Score: 302 bits (773), Expect = 1.650e-101
Identity = 144/175 (82.29%), Postives = 163/175 (93.14%), Query Frame = 1 
Query:    1 VALATTLICLALAYPLALFIARSPKRHRDILVLLVILPFASNFLIRVYAWIMILGPLNLLYTPYAVLIGMVYVHLPFVILPLYTNLEKHDPVLLDAAQDLGAGAWQRFWRVTFPLSLPGVFSGSALVFIPVLGMFAVPELLGGTGDLLVGNLIKEQFLDNRDWPFGATLSIMLTI 525
            VAL TTL+C+ LAYPLA  IARSP + RD+LVLLV+LPFASNFL+R+YAWIM+LGP+NLLYTP+AV+ GMVYVHLPF++LPLYTNLEKHDP LL+AAQDLGA AW RFWRVTFPLSLPG+FSG+ALVFIPVLGMFAVPELLGGTGD+L+GNLIKEQFLDNRDWP G+ LSIMLTI
Sbjct:   80 VALVTTLLCILLAYPLAWLIARSPAKRRDLLVLLVVLPFASNFLVRIYAWIMLLGPINLLYTPFAVIAGMVYVHLPFMVLPLYTNLEKHDPALLEAAQDLGASAWTRFWRVTFPLSLPGIFSGAALVFIPVLGMFAVPELLGGTGDILIGNLIKEQFLDNRDWPLGSALSIMLTI 254
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BLAST of mRNA_P-wetherbeei_contig55202.1.1 vs. uniprot
Match: UPI00193B4ECA (ABC transporter permease n=1 Tax=Azospira restricta TaxID=404405 RepID=UPI00193B4ECA)

HSP 1 Score: 301 bits (772), Expect = 2.860e-101
Identity = 148/175 (84.57%), Postives = 165/175 (94.29%), Query Frame = 1 
Query:    1 VALATTLICLALAYPLALFIARSPKRHRDILVLLVILPFASNFLIRVYAWIMILGPLNLLYTPYAVLIGMVYVHLPFVILPLYTNLEKHDPVLLDAAQDLGAGAWQRFWRVTFPLSLPGVFSGSALVFIPVLGMFAVPELLGGTGDLLVGNLIKEQFLDNRDWPFGATLSIMLTI 525
            VA A+TL+CL LAYPLAL IARSP++ RD+LVLLVILPFASNFLIRVYAWIM+LGP  LLY+P AV++GMVYVHLPF+ILPLYTNLEKHDP LL+AAQDLGAGAW RFWR+TFPLSLPG++SG+ALVFIPVLGMFAVPELLGGTGDLLVGNLIKEQFLDNRDWP G+TLSI+LTI
Sbjct:   90 VAGASTLLCLLLAYPLALLIARSPRKRRDLLVLLVILPFASNFLIRVYAWIMLLGPAGLLYSPVAVIVGMVYVHLPFMILPLYTNLEKHDPALLEAAQDLGAGAWTRFWRITFPLSLPGIWSGAALVFIPVLGMFAVPELLGGTGDLLVGNLIKEQFLDNRDWPLGSTLSILLTI 264
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BLAST of mRNA_P-wetherbeei_contig55202.1.1 vs. uniprot
Match: A0A1Q3VUQ2_9PROT (ABC transporter permease n=1 Tax=Candidatus Accumulibacter sp. 66-26 TaxID=1895689 RepID=A0A1Q3VUQ2_9PROT)

HSP 1 Score: 299 bits (766), Expect = 1.190e-100
Identity = 144/175 (82.29%), Postives = 165/175 (94.29%), Query Frame = 1 
Query:    1 VALATTLICLALAYPLALFIARSPKRHRDILVLLVILPFASNFLIRVYAWIMILGPLNLLYTPYAVLIGMVYVHLPFVILPLYTNLEKHDPVLLDAAQDLGAGAWQRFWRVTFPLSLPGVFSGSALVFIPVLGMFAVPELLGGTGDLLVGNLIKEQFLDNRDWPFGATLSIMLTI 525
            VA A+TL+CL LAYPLAL IARSP+R RD+LVLLVILPFASNFLIRVYAWI++LGP  LLYTP+AV+ GMVYVHLPF+ILPLYTNLEKHDP LL+AAQDLGAGAW RFWR+TFPLSLPG++SG+ALVFIPVLGMFA+PELLGGTGDLL+GNLIKEQFLDNRDWP G+TL+++LT+
Sbjct:   70 VAAASTLLCLILAYPLALTIARSPQRRRDLLVLLVILPFASNFLIRVYAWIILLGPAGLLYTPFAVIAGMVYVHLPFMILPLYTNLEKHDPALLEAAQDLGAGAWTRFWRITFPLSLPGIWSGTALVFIPVLGMFAIPELLGGTGDLLIGNLIKEQFLDNRDWPLGSTLALLLTL 244
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BLAST of mRNA_P-wetherbeei_contig55202.1.1 vs. uniprot
Match: A0A497XJM3_9PROT (ABC-type spermidine/putrescine transport system permease subunit I n=1 Tax=Sulfurisoma sediminicola TaxID=1381557 RepID=A0A497XJM3_9PROT)

HSP 1 Score: 300 bits (767), Expect = 1.300e-100
Identity = 143/171 (83.63%), Postives = 160/171 (93.57%), Query Frame = 1 
Query:   13 TTLICLALAYPLALFIARSPKRHRDILVLLVILPFASNFLIRVYAWIMILGPLNLLYTPYAVLIGMVYVHLPFVILPLYTNLEKHDPVLLDAAQDLGAGAWQRFWRVTFPLSLPGVFSGSALVFIPVLGMFAVPELLGGTGDLLVGNLIKEQFLDNRDWPFGATLSIMLTI 525
            TTLIC+ LAYPLA  IARSP++ RD+LVLLVILPFASNFL+R+YAWIM+LGP NLLYTP AV++GMVYVHLPF+ILPLYTNLEKHDP LL+AAQDLGA AW RFWRVTFPLSLPG+FSGSALVFIPVLGMFAVPELLGGTGD+L+GNLIKEQFLDNRDWP G+ LSI+LT+
Sbjct:   83 TTLICIVLAYPLAWLIARSPQKRRDLLVLLVILPFASNFLVRIYAWIMLLGPANLLYTPAAVIVGMVYVHLPFMILPLYTNLEKHDPALLEAAQDLGASAWTRFWRVTFPLSLPGIFSGSALVFIPVLGMFAVPELLGGTGDILIGNLIKEQFLDNRDWPLGSALSILLTV 253
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BLAST of mRNA_P-wetherbeei_contig55202.1.1 vs. uniprot
Match: A0A658BRK9_9PROT (ABC transporter permease n=2 Tax=Nitrosomonadales bacterium TaxID=2026761 RepID=A0A658BRK9_9PROT)

HSP 1 Score: 300 bits (769), Expect = 1.390e-100
Identity = 141/171 (82.46%), Postives = 162/171 (94.74%), Query Frame = 1 
Query:   13 TTLICLALAYPLALFIARSPKRHRDILVLLVILPFASNFLIRVYAWIMILGPLNLLYTPYAVLIGMVYVHLPFVILPLYTNLEKHDPVLLDAAQDLGAGAWQRFWRVTFPLSLPGVFSGSALVFIPVLGMFAVPELLGGTGDLLVGNLIKEQFLDNRDWPFGATLSIMLTI 525
            TTLIC  +AYPLA  IARSPK+HRD++VLLVILPFASNFLIRVYAWI+ILGPLNLLY+ +AV++GMVYVHLPF++LPLYTNLEKHDP LL+AAQDLGA AW RFWR+TFPLSLPG+FSG+ALVFIPVLGMFA+PELLGGTGD+L+GNLIKEQFLDNRDWP G+TLS+MLT+
Sbjct:  109 TTLICTLMAYPLAWLIARSPKKHRDLMVLLVILPFASNFLIRVYAWIIILGPLNLLYSSFAVIVGMVYVHLPFMVLPLYTNLEKHDPALLEAAQDLGANAWTRFWRITFPLSLPGIFSGAALVFIPVLGMFAIPELLGGTGDILIGNLIKEQFLDNRDWPLGSTLSLMLTV 279
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BLAST of mRNA_P-wetherbeei_contig55202.1.1 vs. uniprot
Match: A0A1G3H7C9_9RHOO (ABC transporter permease n=1 Tax=Rhodocyclales bacterium GWA2_65_20 TaxID=1802017 RepID=A0A1G3H7C9_9RHOO)

HSP 1 Score: 298 bits (763), Expect = 4.780e-100
Identity = 145/175 (82.86%), Postives = 161/175 (92.00%), Query Frame = 1 
Query:    1 VALATTLICLALAYPLALFIARSPKRHRDILVLLVILPFASNFLIRVYAWIMILGPLNLLYTPYAVLIGMVYVHLPFVILPLYTNLEKHDPVLLDAAQDLGAGAWQRFWRVTFPLSLPGVFSGSALVFIPVLGMFAVPELLGGTGDLLVGNLIKEQFLDNRDWPFGATLSIMLTI 525
            VA +TTL+C+ LAYPLA  IARSP R RD+LVLLVILPFASNFL+R+YAWIM+LGP NLLYTP+AV+ GMVYVHLPF+ILPLYTNLEKHDP LL+AAQDLGA AW  FWRVTFPLSLPGVFSGSALVFIPVLGMFAVPELLGGTGD+L+GNLIKEQFL+NRDWP G+ LSIMLT+
Sbjct:   76 VAASTTLLCIVLAYPLAWLIARSPARRRDLLVLLVILPFASNFLVRIYAWIMLLGPANLLYTPFAVIAGMVYVHLPFMILPLYTNLEKHDPALLEAAQDLGASAWTCFWRVTFPLSLPGVFSGSALVFIPVLGMFAVPELLGGTGDILIGNLIKEQFLENRDWPLGSALSIMLTV 250
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BLAST of mRNA_P-wetherbeei_contig55202.1.1 vs. uniprot
Match: A0A3A3G718_9BURK (ABC transporter permease n=2 Tax=Noviherbaspirillum sedimenti TaxID=2320865 RepID=A0A3A3G718_9BURK)

HSP 1 Score: 297 bits (760), Expect = 5.490e-100
Identity = 141/175 (80.57%), Postives = 167/175 (95.43%), Query Frame = 1 
Query:    1 VALATTLICLALAYPLALFIARSPKRHRDILVLLVILPFASNFLIRVYAWIMILGPLNLLYTPYAVLIGMVYVHLPFVILPLYTNLEKHDPVLLDAAQDLGAGAWQRFWRVTFPLSLPGVFSGSALVFIPVLGMFAVPELLGGTGDLLVGNLIKEQFLDNRDWPFGATLSIMLTI 525
            V+LATTLICLALAYPLAL+IAR P R RD++V+LVILPF+SNFLIR+YAWI+ILGP +LLYTP+AV+ GMVYVHLPF+ILPLYTNLEKHDP+LLDAA+DLGA  WQRFW+VTFP+SLPG+FSGSALVFIPVLG+FA+PELLGGTGD+L+GNLIKEQFL++RDWPFGA LS++LT+
Sbjct:   54 VSLATTLICLALAYPLALWIARRPLRQRDVMVILVILPFSSNFLIRIYAWIIILGPFDLLYTPFAVIAGMVYVHLPFMILPLYTNLEKHDPLLLDAARDLGAHPWQRFWKVTFPMSLPGIFSGSALVFIPVLGIFAIPELLGGTGDILIGNLIKEQFLESRDWPFGAALSLILTL 228
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BLAST of mRNA_P-wetherbeei_contig55202.1.1 vs. uniprot
Match: W0SGK4_9PROT (Binding-protein-dependent transport systems inner membrane component n=3 Tax=Betaproteobacteria TaxID=28216 RepID=W0SGK4_9PROT)

HSP 1 Score: 298 bits (763), Expect = 5.840e-100
Identity = 142/174 (81.61%), Postives = 161/174 (92.53%), Query Frame = 1 
Query:    1 VALATTLICLALAYPLALFIARSPKRHRDILVLLVILPFASNFLIRVYAWIMILGPLNLLYTPYAVLIGMVYVHLPFVILPLYTNLEKHDPVLLDAAQDLGAGAWQRFWRVTFPLSLPGVFSGSALVFIPVLGMFAVPELLGGTGDLLVGNLIKEQFLDNRDWPFGATLSIMLT 522
            VA  TTL+C+ LAYPLA  IARSP++ RD LVLLVILPFASNFL+R+YAWIM+LGP+NLLYTP+AV++GMVY HLPF++LPLYTNLEKHDP LL+AAQDLGA AW RFWRVTFPLSLPG+FSGSALVFIPVLGMFAVPELLGGTGD+L+GNLIKEQFL+NRDWP G+ LSIMLT
Sbjct:   82 VAALTTLLCIVLAYPLAWLIARSPRQRRDFLVLLVILPFASNFLVRIYAWIMLLGPVNLLYTPFAVIVGMVYAHLPFMVLPLYTNLEKHDPALLEAAQDLGANAWTRFWRVTFPLSLPGIFSGSALVFIPVLGMFAVPELLGGTGDILIGNLIKEQFLENRDWPLGSALSIMLT 255
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BLAST of mRNA_P-wetherbeei_contig55202.1.1 vs. uniprot
Match: UPI00129156CB (ABC transporter permease n=1 Tax=Dechloromonas sp. H13 TaxID=2570193 RepID=UPI00129156CB)

HSP 1 Score: 294 bits (752), Expect = 2.490e-98
Identity = 142/171 (83.04%), Postives = 159/171 (92.98%), Query Frame = 1 
Query:   13 TTLICLALAYPLALFIARSPKRHRDILVLLVILPFASNFLIRVYAWIMILGPLNLLYTPYAVLIGMVYVHLPFVILPLYTNLEKHDPVLLDAAQDLGAGAWQRFWRVTFPLSLPGVFSGSALVFIPVLGMFAVPELLGGTGDLLVGNLIKEQFLDNRDWPFGATLSIMLTI 525
            TTL+CL LAYPLA+ I RSPKR RD+LVLLVILPFASNFLIR+YAW++ILGPL+LLY+P AV++GMVYVHLPF+ILPLYTNLEKHDP LL+AAQDLGAG W RFW VT+PLSLPGV SGSALVFIPVLGMFAVPELLGGTGDLL+GNLIKEQFLDNRDWP GA LS++LT+
Sbjct:   88 TTLLCLVLAYPLAVLIVRSPKRRRDLLVLLVILPFASNFLIRIYAWMIILGPLDLLYSPVAVIVGMVYVHLPFMILPLYTNLEKHDPALLEAAQDLGAGGWARFWCVTWPLSLPGVLSGSALVFIPVLGMFAVPELLGGTGDLLIGNLIKEQFLDNRDWPLGAALSLLLTL 258
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig55202.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A518UBR9_9PROT1.390e-10182.29ABC transporter permease n=1 Tax=Denitratisoma sp.... [more]
A0A6S6YHY4_9PROT1.650e-10182.29Polyamine transporter subunit membrane component o... [more]
UPI00193B4ECA2.860e-10184.57ABC transporter permease n=1 Tax=Azospira restrict... [more]
A0A1Q3VUQ2_9PROT1.190e-10082.29ABC transporter permease n=1 Tax=Candidatus Accumu... [more]
A0A497XJM3_9PROT1.300e-10083.63ABC-type spermidine/putrescine transport system pe... [more]
A0A658BRK9_9PROT1.390e-10082.46ABC transporter permease n=2 Tax=Nitrosomonadales ... [more]
A0A1G3H7C9_9RHOO4.780e-10082.86ABC transporter permease n=1 Tax=Rhodocyclales bac... [more]
A0A3A3G718_9BURK5.490e-10080.57ABC transporter permease n=2 Tax=Noviherbaspirillu... [more]
W0SGK4_9PROT5.840e-10081.61Binding-protein-dependent transport systems inner ... [more]
UPI00129156CB2.490e-9883.04ABC transporter permease n=1 Tax=Dechloromonas sp.... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig55202contigP-wetherbeei_contig55202:2..526 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog522306.CAP2UW1_1637
Preferred namepotB
PFAMsBPD_transp_1
Model size525
Max annot lvl28216|Betaproteobacteria
KEGG koko:K02054,ko:K11071
KEGG TC3.A.1.11,3.A.1.11.1
KEGG Pathwayko02010,ko02024,map02010,map02024
KEGG ModuleM00193,M00299
Hectar predicted targeting categorysignal peptide
Exons1
Evalue6.91e-97
EggNOG OGsCOG1176@1|root,COG1176@2|Bacteria,1MVGM@1224|Proteobacteria,2VHYC@28216|Betaproteobacteria,1KQVC@119066|unclassified Betaproteobacteria
DescriptionBinding-protein-dependent transport system inner membrane component
Cds size525
COG categoryU
BRITEko00000,ko00001,ko00002,ko02000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186823.3624642-CDS-P-wetherbeei_contig55202:1..5261683186823.3624642-CDS-P-wetherbeei_contig55202:1..526Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig55202 2..526 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig55202.1.1prot_P-wetherbeei_contig55202.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig55202 2..526 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig55202.1.1

>prot_P-wetherbeei_contig55202.1.1 ID=prot_P-wetherbeei_contig55202.1.1|Name=mRNA_P-wetherbeei_contig55202.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=175bp
VALATTLICLALAYPLALFIARSPKRHRDILVLLVILPFASNFLIRVYAW
IMILGPLNLLYTPYAVLIGMVYVHLPFVILPLYTNLEKHDPVLLDAAQDL
GAGAWQRFWRVTFPLSLPGVFSGSALVFIPVLGMFAVPELLGGTGDLLVG
NLIKEQFLDNRDWPFGATLSIMLTI
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mRNA from alignment at P-wetherbeei_contig55202:2..526+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig55202.1.1 ID=mRNA_P-wetherbeei_contig55202.1.1|Name=mRNA_P-wetherbeei_contig55202.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=525bp|location=Sequence derived from alignment at P-wetherbeei_contig55202:2..526+ (Phaeothamnion wetherbeei SAG_119_79)
GTCGCCCTTGCAACCACGCTGATCTGCCTTGCGCTTGCCTATCCGCTGGC
ACTATTCATCGCACGCAGCCCCAAGCGCCACCGCGACATCCTGGTGCTGC
TGGTGATCCTGCCGTTCGCGAGCAACTTCCTGATCCGCGTCTACGCGTGG
ATCATGATCCTGGGTCCCCTGAACCTGCTCTACACCCCGTATGCGGTGCT
GATCGGCATGGTCTACGTGCACCTGCCGTTCGTCATCCTGCCGCTGTACA
CGAATCTGGAAAAGCACGATCCGGTTCTGCTCGACGCCGCCCAGGACCTT
GGCGCCGGCGCGTGGCAGCGTTTCTGGCGCGTGACCTTCCCGCTTTCACT
GCCGGGCGTGTTTTCCGGCAGCGCGCTGGTCTTCATTCCGGTACTCGGCA
TGTTCGCCGTGCCGGAACTGCTCGGCGGCACCGGCGACCTCCTGGTCGGC
AACCTTATCAAGGAACAGTTTCTCGACAATCGCGACTGGCCGTTCGGCGC
CACGCTTTCGATCATGCTGACCATC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig55202:2..526+

>mRNA_P-wetherbeei_contig55202.1.1 ID=mRNA_P-wetherbeei_contig55202.1.1|Name=mRNA_P-wetherbeei_contig55202.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=525bp|location=Sequence derived from alignment at P-wetherbeei_contig55202:2..526+ (Phaeothamnion wetherbeei SAG_119_79)
GTCGCCCTTGCAACCACGCTGATCTGCCTTGCGCTTGCCTATCCGCTGGC
ACTATTCATCGCACGCAGCCCCAAGCGCCACCGCGACATCCTGGTGCTGC
TGGTGATCCTGCCGTTCGCGAGCAACTTCCTGATCCGCGTCTACGCGTGG
ATCATGATCCTGGGTCCCCTGAACCTGCTCTACACCCCGTATGCGGTGCT
GATCGGCATGGTCTACGTGCACCTGCCGTTCGTCATCCTGCCGCTGTACA
CGAATCTGGAAAAGCACGATCCGGTTCTGCTCGACGCCGCCCAGGACCTT
GGCGCCGGCGCGTGGCAGCGTTTCTGGCGCGTGACCTTCCCGCTTTCACT
GCCGGGCGTGTTTTCCGGCAGCGCGCTGGTCTTCATTCCGGTACTCGGCA
TGTTCGCCGTGCCGGAACTGCTCGGCGGCACCGGCGACCTCCTGGTCGGC
AACCTTATCAAGGAACAGTTTCTCGACAATCGCGACTGGCCGTTCGGCGC
CACGCTTTCGATCATGCTGACCATC
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