mRNA_P-wetherbeei_contig55180.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig55180.1.1
Unique NamemRNA_P-wetherbeei_contig55180.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig55180.1.1 vs. uniprot
Match: A0A847ZWV5_9HYPH (Tetratricopeptide repeat protein n=1 Tax=Phyllobacteriaceae bacterium TaxID=1871068 RepID=A0A847ZWV5_9HYPH)

HSP 1 Score: 244 bits (624), Expect = 2.260e-76
Identity = 126/175 (72.00%), Postives = 148/175 (84.57%), Query Frame = 1
Query:    1 LLWRFGLLILAALFFTWLADRPGTVTIQWMGREIQMAFVIAVALAFLTLALLWFVWGFFRRIWRSPTAARDYWRFRKNRKAYESLSRGIIAAGAGDSIAASKHAAIAGNALADEPLVNVLAAQAAQLKGDRASVKRIFEEMTKSSETEALGLRGLFAEARQNGDVTSAMNHAEPA 525
            LLWRF +L+ AAL F WLADRPG+VTI W+GREI M+ ++AVA+    L  L F W   RRIWRSPTAAR++WRFR++RKAYESLS+GIIAAGAGD+ AA++HAAIAGN LADEPLVNVLAAQAAQLKGDR  VKRIFEEMTKS ETE +GLRGLF+EARQ GD+ +A++HAE A
Sbjct:    4 LLWRFAILLAAALLFAWLADRPGSVTITWLGREIHMSVLVAVAIGLTLLFALSFAWQLLRRIWRSPTAAREFWRFRQHRKAYESLSKGIIAAGAGDAQAAARHAAIAGNTLADEPLVNVLAAQAAQLKGDREGVKRIFEEMTKSPETELMGLRGLFSEARQTGDLVAALHHAEKA 178          
BLAST of mRNA_P-wetherbeei_contig55180.1.1 vs. uniprot
Match: A0A2W2BPY3_9HYPH (HemY_N domain-containing protein n=2 Tax=Aestuariivirga litoralis TaxID=2650924 RepID=A0A2W2BPY3_9HYPH)

HSP 1 Score: 229 bits (584), Expect = 1.560e-67
Identity = 123/175 (70.29%), Postives = 139/175 (79.43%), Query Frame = 1
Query:    1 LLWRFGLLILAALFFTWLADRPGTVTIQWMGREIQMAFVIAVALAFLTLALLWFVWGFFRRIWRSPTAARDYWRFRKNRKAYESLSRGIIAAGAGDSIAASKHAAIAGNALADEPLVNVLAAQAAQLKGDRASVKRIFEEMTKSSETEALGLRGLFAEARQNGDVTSAMNHAEPA 525
            LLWRF LL+  A  F WLADRPGT+TI+W+GREIQM+F+  V +A +        W  FRR+W SP A   ++ FRKNRK YESLSRGIIAAGAGD+ AA+KHAAIAGNALADEPLVNVLAAQAAQLKGDRA VKRIFE MTKS +TEALGLRGLF+EARQ GDV +A  HAE A
Sbjct:  344 LLWRFLLLVALAAGFAWLADRPGTLTIRWLGREIQMSFIAGVVIAVVXXXXXXXXWSLFRRLWASPQAVGRWYSFRKNRKGYESLSRGIIAAGAGDAAAAAKHAAIAGNALADEPLVNVLAAQAAQLKGDRAQVKRIFEAMTKSPDTEALGLRGLFSEARQAGDVAAARRHAERA 518          
BLAST of mRNA_P-wetherbeei_contig55180.1.1 vs. uniprot
Match: UPI0018C617FF (heme biosynthesis protein HemY n=1 Tax=Aestuariivirga litoralis TaxID=2650924 RepID=UPI0018C617FF)

HSP 1 Score: 178 bits (452), Expect = 7.470e-51
Identity = 99/175 (56.57%), Postives = 123/175 (70.29%), Query Frame = 1
Query:    1 LLWRFGLLILAALFFTWLADRPGTVTIQWMGREIQMAFVIAVALAFLTLALLWFVWGFFRRIWRSPTAARDYWRFRKNRKAYESLSRGIIAAGAGDSIAASKHAAIAGNALADEPLVNVLAAQAAQLKGDRASVKRIFEEMTKSSETEALGLRGLFAEARQNGDVTSAMNHAEPA 525
            LLWR  LL+ A L   WLADRPGTV I W+G+EI ++ ++ + +  ++ A ++ V     RIWR P+  R   R RK RKAYESLSRGIIAAGAGD+ AA +HAA+AG+ L   PLV +L AQAAQL+GDR  V+R+FE MT  S+TE LGLRGLFA AR NGD  +A  HAE A
Sbjct:    4 LLWRLALLVAAGLGIMWLADRPGTVNILWLGKEIHLSVLMGLIIIVVSFAAIYVVLRIINRIWRVPSDVRGSLRERKTRKAYESLSRGIIAAGAGDAQAAQRHAALAGDTLHGNPLVKLLGAQAAQLRGDRDEVRRVFETMTGHSDTELLGLRGLFAHARDNGDWHAARLHAEAA 178          
BLAST of mRNA_P-wetherbeei_contig55180.1.1 vs. uniprot
Match: A0A6G6WS20_9HYPH (Heme biosynthesis protein HemY n=1 Tax=Nordella sp. HKS 07 TaxID=2712222 RepID=A0A6G6WS20_9HYPH)

HSP 1 Score: 174 bits (441), Expect = 8.290e-49
Identity = 98/175 (56.00%), Postives = 122/175 (69.71%), Query Frame = 1
Query:    1 LLWRFGLLILAALFFTWLADRPGTVTIQWMGREIQMAFVIAVALAFLTLALLWFVWGFFRRIWRSPTAARDYWRFRKNRKAYESLSRGIIAAGAGDSIAASKHAAIAGNALADEPLVNVLAAQAAQLKGDRASVKRIFEEMTKSSETEALGLRGLFAEARQNGDVTSAMNHAEPA 525
            LL+RF LL  AA  F W+ADRPGT+ I+W+  EI+ + V  +A   L +  LWF+ G  RR+  +P A   Y+RFRK R+ YESLSRGIIAAGAGD  +A + A IA  +L DEPL+ +L  QAAQLKGDR  V++ FE M  S ETEALGLRGLFAEARQ GD+ +A  +AE A
Sbjct:    4 LLFRFLLLAAAAAGFAWIADRPGTIVIRWLNHEIETSVVAGLAGLILAMLALWFLLGLLRRLIGTPGAIGGYFRFRKARRGYESLSRGIIAAGAGDGASAQRFATIAAKSLTDEPLLKLLEVQAAQLKGDRGKVRQGFEAMLNSPETEALGLRGLFAEARQAGDLVAARGYAERA 178          
BLAST of mRNA_P-wetherbeei_contig55180.1.1 vs. uniprot
Match: UPI0019087842 (heme biosynthesis protein HemY n=1 Tax=Aestuariivirga sp. YIM B02566 TaxID=2800327 RepID=UPI0019087842)

HSP 1 Score: 172 bits (437), Expect = 3.030e-48
Identity = 97/175 (55.43%), Postives = 123/175 (70.29%), Query Frame = 1
Query:    1 LLWRFGLLILAALFFTWLADRPGTVTIQWMGREIQMAFVIAVALAFLTLALLWFVWGFFRRIWRSPTAARDYWRFRKNRKAYESLSRGIIAAGAGDSIAASKHAAIAGNALADEPLVNVLAAQAAQLKGDRASVKRIFEEMTKSSETEALGLRGLFAEARQNGDVTSAMNHAEPA 525
            LL RF LL  AA  F W+ADRPGT+ I+W+ REI+ + +  +A     +  LWF+ G  RR+  +P A   Y+RFRK R+ YESLSRGIIAAGAGD  +A + AAIA  +L DEPL+ +L  QAAQLKGDR  V++ FE M KS +TEALGLRGLF+EARQ GD+ +A  +AE A
Sbjct:    4 LLIRFLLLAAAAAGFAWIADRPGTIVIRWLNREIETSVLAGLAGLIFAVLALWFLLGLLRRLIGTPGAIGGYFRFRKARRGYESLSRGIIAAGAGDGASAQRFAAIAAKSLTDEPLLRLLEVQAAQLKGDRTKVRQGFEAMLKSPQTEALGLRGLFSEARQAGDLAAARGYAERA 178          
BLAST of mRNA_P-wetherbeei_contig55180.1.1 vs. uniprot
Match: A0A2W4KTN8_9PROT (Heme biosynthesis protein HemY (Fragment) n=1 Tax=Proteobacteria bacterium TaxID=1977087 RepID=A0A2W4KTN8_9PROT)

HSP 1 Score: 140 bits (352), Expect = 1.470e-38
Identity = 80/171 (46.78%), Postives = 113/171 (66.08%), Query Frame = 1
Query:   19 LLILAALFF--TWLADRPGTVTIQWMGREIQMAFVIAVALAFLTLALLWFVWGFFRRIWRSPTAARDYWRFRKNRKAYESLSRGIIAAGAGDSIAASKHAAIAGNALADEPLVNVLAAQAAQLKGDRASVKRIFEEMTKSSETEALGLRGLFAEARQNGDVTSAMNHAEPA 525
            LL+++AL F  +WLADRPG++ IQW G EI+ +   A+ +  + L L   +W   R+IW SP A   ++  R+ ++ +E+LS G+IA GAGD   A+++A  A   L +EPL ++L AQAAQL GDRA+ +RIFE M  S +TE LGLRGLF EA + GD  +A + AE A
Sbjct:    8 LLVVSALAFGLSWLADRPGSLVIQWQGYEIETSVFRAIVILTVFLGLAIVLWSVLRQIWNSPAAIGRFFNQRRQKRGFEALSSGMIAIGAGDRALATRYAIQARKTLPNEPLTHLLRAQAAQLSGDRATARRIFEAMLASPDTEQLGLRGLFLEAEREGDQEAARHFAERA 178          
BLAST of mRNA_P-wetherbeei_contig55180.1.1 vs. uniprot
Match: UPI0010C9C748 (heme biosynthesis protein HemY n=1 Tax=Rhodoligotrophos defluvii TaxID=2561934 RepID=UPI0010C9C748)

HSP 1 Score: 142 bits (358), Expect = 1.350e-36
Identity = 82/175 (46.86%), Postives = 111/175 (63.43%), Query Frame = 1
Query:    1 LLWRFGLLILAALFFTWLADRPGTVTIQWMGREIQMAFVIAVALAFLTLALLWFVWGFFRRIWRSPTAARDYWRFRKNRKAYESLSRGIIAAGAGDSIAASKHAAIAGNALADEPLVNVLAAQAAQLKGDRASVKRIFEEMTKSSETEALGLRGLFAEARQNGDVTSAMNHAEPA 525
            +++RF ++ L A    WLADRPGT+ I W+G  IQM  + AV      +A +  +W   RR+  +P A  D++  R+ RK + +LSRGIIA GAGD   A + A IA   L DEPLV +L AQ AQL+G+  SV++IFE M ++ ETE LGLRGLF +ARQ G++  A   AE A
Sbjct:    4 IIFRFIIIALIAAGIAWLADRPGTLNIVWLGYHIQMPMIAAVFCLLALMAAIALLWSLLRRLVFAPAAVSDFFGHRRRRKGHRALSRGIIAIGAGDLHGAQRQAQIAARNLPDEPLVKLLQAQTAQLEGNATSVRQIFEGMLRNRETELLGLRGLFNQARQAGNLAEARRLAERA 178          
BLAST of mRNA_P-wetherbeei_contig55180.1.1 vs. uniprot
Match: UPI00117D9FF1 (heme biosynthesis protein HemY n=1 Tax=Rhodoligotrophos appendicifer TaxID=987056 RepID=UPI00117D9FF1)

HSP 1 Score: 140 bits (353), Expect = 6.660e-36
Identity = 84/175 (48.00%), Postives = 108/175 (61.71%), Query Frame = 1
Query:    1 LLWRFGLLILAALFFTWLADRPGTVTIQWMGREIQMAFVIAVALAFLTLALLWFVWGFFRRIWRSPTAARDYWRFRKNRKAYESLSRGIIAAGAGDSIAASKHAAIAGNALADEPLVNVLAAQAAQLKGDRASVKRIFEEMTKSSETEALGLRGLFAEARQNGDVTSAMNHAEPA 525
            +++RF ++ L A    WLADRPG + I W+G  I+M  + AV      + ++  VW   RR++ +P A   Y+  R+ RK +++LSRGIIA GAGD   A + A IA   L +EPLV VL AQ AQL+GD A VKRIFE M  S ETE LGLRGLF +ARQ G    A   AE A
Sbjct:    4 MIFRFIVIALIAAGVAWLADRPGEINIVWLGYRIEMPMLAAVFALLAVMIIIAAVWSVLRRLFFAPAAMTGYFDHRRRRKGHKALSRGIIAIGAGDLHNARRQAQIAVRNLPEEPLVRVLEAQTAQLEGDNAKVKRIFESMAASPETEVLGLRGLFNQARQAGQYDEARQIAERA 178          
BLAST of mRNA_P-wetherbeei_contig55180.1.1 vs. uniprot
Match: A0A7S8C2M8_9HYPH (Heme biosynthesis protein HemY n=2 Tax=Kaustia mangrovi TaxID=2593653 RepID=A0A7S8C2M8_9HYPH)

HSP 1 Score: 134 bits (338), Expect = 1.090e-33
Identity = 76/175 (43.43%), Postives = 111/175 (63.43%), Query Frame = 1
Query:    1 LLWRFGLLILAALFFTWLADRPGTVTIQWMGREIQMAFVIAVALAFLTLALLWFVWGFFRRIWRSPTAARDYWRFRKNRKAYESLSRGIIAAGAGDSIAASKHAAIAGNALADEPLVNVLAAQAAQLKGDRASVKRIFEEMTKSSETEALGLRGLFAEARQNGDVTSAMNHAEPA 525
            +++RF ++ L A    WLADRPGTV I W+G  ++M  +  +    L + +L   W   R +  +P +   ++  RK RK   +LS+GI+A GAGD  +A ++A +A  +L DEPL  +L AQ AQL+GDR + K I+EEMT  +ETEALGLRGLF  ARQ+G+  +A + A+ A
Sbjct:    7 MIFRFIVVALVAAGLAWLADRPGTVEIDWLGTTVEMPLIAGLFGLLLVMVVLALAWRLLRGLVAAPGSVSGFFSNRKRRKGEAALSKGIMAVGAGDVASAKRYAQLAARSLPDEPLARLLKAQTAQLRGDRDTAKAIYEEMTHHAETEALGLRGLFNLARQDGEYDTARDLADRA 181          
BLAST of mRNA_P-wetherbeei_contig55180.1.1 vs. uniprot
Match: UPI0019B06792 (Heme biosynthesis protein HemY n=1 Tax=Methyloceanibacter sp. TaxID=1965321 RepID=UPI0019B06792)

HSP 1 Score: 132 bits (332), Expect = 1.320e-33
Identity = 72/164 (43.90%), Postives = 102/164 (62.20%), Query Frame = 1
Query:   34 ALFFTWLADRPGTVTIQWMGREIQMAFVIAVALAFLTLALLWFVWGFFRRIWRSPTAARDYWRFRKNRKAYESLSRGIIAAGAGDSIAASKHAAIAGNALADEPLVNVLAAQAAQLKGDRASVKRIFEEMTKSSETEALGLRGLFAEARQNGDVTSAMNHAEPA 525
            A+   WLADRPGTVT++W+G +++ + ++        + LL  +W   R ++  P A   Y R R+ ++ Y++LSRG++A G GD   A ++A IAG  L  EPL  +L AQAAQLKGDRA+ +  FE M    ET+ LGLRGLF EAR++ D  +A   AE A
Sbjct:   23 AIGLAWLADRPGTVTVEWLGYQVETSALVGALAVVGVIVLLMLIWAVLRYLFTRPAAVAAYVRERRRQQGYDALSRGLLAIGVGDRALAQRYAGIAGRNLPREPLTALLRAQAAQLKGDRAAARHAFETMLDRPETQLLGLRGLFLEARRSNDNEAARALAEQA 186          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig55180.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A847ZWV5_9HYPH2.260e-7672.00Tetratricopeptide repeat protein n=1 Tax=Phyllobac... [more]
A0A2W2BPY3_9HYPH1.560e-6770.29HemY_N domain-containing protein n=2 Tax=Aestuarii... [more]
UPI0018C617FF7.470e-5156.57heme biosynthesis protein HemY n=1 Tax=Aestuariivi... [more]
A0A6G6WS20_9HYPH8.290e-4956.00Heme biosynthesis protein HemY n=1 Tax=Nordella sp... [more]
UPI00190878423.030e-4855.43heme biosynthesis protein HemY n=1 Tax=Aestuariivi... [more]
A0A2W4KTN8_9PROT1.470e-3846.78Heme biosynthesis protein HemY (Fragment) n=1 Tax=... [more]
UPI0010C9C7481.350e-3646.86heme biosynthesis protein HemY n=1 Tax=Rhodoligotr... [more]
UPI00117D9FF16.660e-3648.00heme biosynthesis protein HemY n=1 Tax=Rhodoligotr... [more]
A0A7S8C2M8_9HYPH1.090e-3343.43Heme biosynthesis protein HemY n=2 Tax=Kaustia man... [more]
UPI0019B067921.320e-3343.90Heme biosynthesis protein HemY n=1 Tax=Methylocean... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig55180contigP-wetherbeei_contig55180:2..526 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog670307.HYPDE_41318
Preferred namelapB
PFAMsHemY_N,TPR_19
Model size525
Max annot lvl28211|Alphaproteobacteria
KEGG koko:K02498
Hectar predicted targeting categorysignal peptide
Exons1
Evalue4.13e-33
EggNOG OGsCOG3898@1|root,COG3898@2|Bacteria,1P5RR@1224|Proteobacteria,2TT5Q@28211|Alphaproteobacteria,3N6D4@45401|Hyphomicrobiaceae
DescriptionHemY protein N-terminus
Cds size525
COG categoryS
BRITEko00000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186823.0584376-CDS-P-wetherbeei_contig55180:1..5261683186823.0584376-CDS-P-wetherbeei_contig55180:1..526Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig55180 2..526 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig55180.1.1prot_P-wetherbeei_contig55180.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig55180 2..526 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig55180.1.1

>prot_P-wetherbeei_contig55180.1.1 ID=prot_P-wetherbeei_contig55180.1.1|Name=mRNA_P-wetherbeei_contig55180.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=175bp
LLWRFGLLILAALFFTWLADRPGTVTIQWMGREIQMAFVIAVALAFLTLA
LLWFVWGFFRRIWRSPTAARDYWRFRKNRKAYESLSRGIIAAGAGDSIAA
SKHAAIAGNALADEPLVNVLAAQAAQLKGDRASVKRIFEEMTKSSETEAL
GLRGLFAEARQNGDVTSAMNHAEPA
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mRNA from alignment at P-wetherbeei_contig55180:2..526-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig55180.1.1 ID=mRNA_P-wetherbeei_contig55180.1.1|Name=mRNA_P-wetherbeei_contig55180.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=525bp|location=Sequence derived from alignment at P-wetherbeei_contig55180:2..526- (Phaeothamnion wetherbeei SAG_119_79)
CTGCTTTGGCGTTTTGGCCTCCTGATACTTGCCGCCTTGTTCTTTACCTG GCTGGCTGACCGGCCCGGCACCGTCACGATTCAGTGGATGGGCCGCGAAA TCCAGATGGCTTTCGTCATCGCGGTCGCTCTCGCATTTCTCACCCTTGCG CTGCTCTGGTTTGTCTGGGGCTTCTTCCGCAGGATATGGCGCAGCCCCAC CGCGGCGCGCGACTATTGGCGCTTTCGCAAAAACCGCAAAGCCTATGAAT CCCTGTCGCGCGGCATCATCGCGGCGGGTGCTGGCGACAGCATCGCGGCT TCCAAACACGCGGCCATCGCCGGCAACGCCTTGGCCGATGAGCCGCTTGT GAATGTGCTGGCAGCCCAAGCCGCCCAACTCAAGGGCGACCGCGCCTCAG TCAAGCGTATCTTTGAAGAGATGACAAAATCATCGGAGACCGAAGCCTTG GGCCTCCGCGGGCTTTTTGCCGAGGCCCGCCAGAATGGCGATGTAACCTC GGCGATGAATCATGCGGAGCCGGCC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig55180:2..526-

>mRNA_P-wetherbeei_contig55180.1.1 ID=mRNA_P-wetherbeei_contig55180.1.1|Name=mRNA_P-wetherbeei_contig55180.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=525bp|location=Sequence derived from alignment at P-wetherbeei_contig55180:2..526- (Phaeothamnion wetherbeei SAG_119_79)
CTGCTTTGGCGTTTTGGCCTCCTGATACTTGCCGCCTTGTTCTTTACCTG
GCTGGCTGACCGGCCCGGCACCGTCACGATTCAGTGGATGGGCCGCGAAA
TCCAGATGGCTTTCGTCATCGCGGTCGCTCTCGCATTTCTCACCCTTGCG
CTGCTCTGGTTTGTCTGGGGCTTCTTCCGCAGGATATGGCGCAGCCCCAC
CGCGGCGCGCGACTATTGGCGCTTTCGCAAAAACCGCAAAGCCTATGAAT
CCCTGTCGCGCGGCATCATCGCGGCGGGTGCTGGCGACAGCATCGCGGCT
TCCAAACACGCGGCCATCGCCGGCAACGCCTTGGCCGATGAGCCGCTTGT
GAATGTGCTGGCAGCCCAAGCCGCCCAACTCAAGGGCGACCGCGCCTCAG
TCAAGCGTATCTTTGAAGAGATGACAAAATCATCGGAGACCGAAGCCTTG
GGCCTCCGCGGGCTTTTTGCCGAGGCCCGCCAGAATGGCGATGTAACCTC
GGCGATGAATCATGCGGAGCCGGCC
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