mRNA_P-wetherbeei_contig5518.4.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig5518.4.1
Unique NamemRNA_P-wetherbeei_contig5518.4.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
[Close]
BLAST of mRNA_P-wetherbeei_contig5518.4.1 vs. uniprot
Match: A0A7X9ILM3_9DELT (Glycosyltransferase family 2 protein n=1 Tax=SAR324 cluster bacterium TaxID=2024889 RepID=A0A7X9ILM3_9DELT)

HSP 1 Score: 75.9 bits (185), Expect = 1.030e-13
Identity = 31/79 (39.24%), Postives = 47/79 (59.49%), Query Frame = 3 
Query:  108 LAVCHHLSYAHTTEQLMRKVSSISHAPEVSPGWFEETWLEWDTNFSLEDVHPVWRSAHERLAVQPLHQLTPGLWRLHLR 344
            L V HH+SYA +  +++RK+S+ SHA ++ P W+E  W  WD N  L ++HP W  A++ +   P  +L P   R  LR
Sbjct:  470 LCVMHHMSYARSDNEILRKISTFSHADQMIPNWYENVWKAWDENMQLRNLHPCWPDAYQEVVGVP-EELLPSALRSRLR 547
[Close]
BLAST of mRNA_P-wetherbeei_contig5518.4.1 vs. uniprot
Match: A0A7V3L3Q7_9BACT (Glycosyltransferase n=1 Tax=Armatimonadetes bacterium TaxID=2033014 RepID=A0A7V3L3Q7_9BACT)

HSP 1 Score: 75.5 bits (184), Expect = 1.510e-13
Identity = 34/73 (46.58%), Postives = 46/73 (63.01%), Query Frame = 3 
Query:  114 VCHHLSYAHTTEQLMRKVSSISHAPEVSPGWFEETWLEWDTNFSLEDVHPVWRSAHERLAVQPLHQLTPGLWR 332
            +CHHLSYA + E+L+RK+++ SHA E+   W+E  W  WD N SL  +HP   SA+ R  +QP   L P L R
Sbjct:  426 ICHHLSYARSDEELLRKLATFSHAHELVDSWYENVWKAWDKNHSLCYLHPTHPSAYLRAVLQPYWALPPVLRR 498
[Close]
BLAST of mRNA_P-wetherbeei_contig5518.4.1 vs. uniprot
Match: A0A7V3ML18_9BACT (Uncharacterized protein n=1 Tax=Armatimonadetes bacterium TaxID=2033014 RepID=A0A7V3ML18_9BACT)

HSP 1 Score: 73.9 bits (180), Expect = 1.980e-13
Identity = 34/87 (39.08%), Postives = 50/87 (57.47%), Query Frame = 3 
Query:   84 QRW--TLSRSLAVCHHLSYAHTTEQLMRKVSSISHAPEVSPGWFEETWLEWDTNFSLEDVHPVWRSAHERLAVQPLHQLTPGLWRLH 338
            +RW   + R +  CHH SYA   E ++RK+ S SH  E+ P W+E  WL WD + SLE++HPV  + ++R     +  L P + R H
Sbjct:  170 ERWRRAIPRRVVECHHFSYARPNESVLRKIRSFSHRGELVPNWYENVWLRWDEDHSLENLHPVHPAEYKRAVPADIDSL-PEVMRDH 255
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5518.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A7X9ILM3_9DELT1.030e-1339.24Glycosyltransferase family 2 protein n=1 Tax=SAR32... [more]
A0A7V3L3Q7_9BACT1.510e-1346.58Glycosyltransferase n=1 Tax=Armatimonadetes bacter... [more]
A0A7V3ML18_9BACT1.980e-1339.08Uncharacterized protein n=1 Tax=Armatimonadetes ba... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig5518contigP-wetherbeei_contig5518:3366..3709 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7FK33
Model size345
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons1
Evalue3.49e-13
EggNOG OGs2EN0C@1|root,2SRIN@2759|Eukaryota
Cds size189
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186823.017033-UTR-P-wetherbeei_contig5518:3365..35201683186823.017033-UTR-P-wetherbeei_contig5518:3365..3520Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig5518 3366..3520 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186823.0275111-CDS-P-wetherbeei_contig5518:3520..37091683186823.0275111-CDS-P-wetherbeei_contig5518:3520..3709Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5518 3521..3709 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig5518.4.1prot_P-wetherbeei_contig5518.4.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig5518 3521..3709 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig5518.4.1

>prot_P-wetherbeei_contig5518.4.1 ID=prot_P-wetherbeei_contig5518.4.1|Name=mRNA_P-wetherbeei_contig5518.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=63bp
MRKVSSISHAPEVSPGWFEETWLEWDTNFSLEDVHPVWRSAHERLAVQPL
HQLTPGLWRLHLR
back to top

mRNA from alignment at P-wetherbeei_contig5518:3366..3709+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig5518.4.1 ID=mRNA_P-wetherbeei_contig5518.4.1|Name=mRNA_P-wetherbeei_contig5518.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=344bp|location=Sequence derived from alignment at P-wetherbeei_contig5518:3366..3709+ (Phaeothamnion wetherbeei SAG_119_79)
GCTCTTTGTTCCGCCTTTAGGGGCAGGTGGACTCAGCTGTGCGCTCTCTT
GTGCCGCGTGTACGGCGGCGGCGGCAACGATGACAGCGGTGGACGCTTTC
CCGGTCGCTCGCTGTCTGCCACCACCTCAGCTATGCGCACACCACCGAGC
AGCTCATGCGGAAGGTGTCGTCCATCTCCCACGCACCCGAAGTTTCTCCG
GGGTGGTTTGAAGAGACGTGGCTTGAGTGGGACACCAATTTTAGCCTGGA
GGATGTGCATCCGGTGTGGCGGAGCGCCCACGAGAGGCTTGCCGTGCAGC
CGCTGCACCAGCTGACGCCAGGCCTGTGGCGCTTGCATCTCCGC
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig5518:3366..3709+

>mRNA_P-wetherbeei_contig5518.4.1 ID=mRNA_P-wetherbeei_contig5518.4.1|Name=mRNA_P-wetherbeei_contig5518.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=189bp|location=Sequence derived from alignment at P-wetherbeei_contig5518:3366..3709+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCGGAAGGTGTCGTCCATCTCCCACGCACCCGAAGTTTCTCCGGGGTG
GTTTGAAGAGACGTGGCTTGAGTGGGACACCAATTTTAGCCTGGAGGATG
TGCATCCGGTGTGGCGGAGCGCCCACGAGAGGCTTGCCGTGCAGCCGCTG
CACCAGCTGACGCCAGGCCTGTGGCGCTTGCATCTCCGC
back to top