mRNA_P-wetherbeei_contig55163.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig55163.1.1
Unique NamemRNA_P-wetherbeei_contig55163.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig55163.1.1 vs. uniprot
Match: A0A7V9VW18_9CHLR (Alpha-galactosidase n=1 Tax=Chloroflexia bacterium TaxID=2448782 RepID=A0A7V9VW18_9CHLR)

HSP 1 Score: 207 bits (527), Expect = 1.130e-60
Identity = 87/121 (71.90%), Postives = 104/121 (85.95%), Query Frame = 1
Query:    1 GREGAHLCLGNPEVQQWVLDEVVRVIRDYGVDWLKWDYNMGYGLGCNDPTHGHQTGDGHYAHTYGLYRVLAAIREACPELVIENCSSGGHRIDLGMLRHSHTSWVSDYTHRAASCRHHSQG 363
            G EG HLCLGNPEV+QW++ +++RV+RDYGVDWLKWDYN+GYGLGC+   HGHQ  DGH+AHT GLY V  A+R ACP L+IENC+SGGHR+DLG LRH+HT+W+SDYTHRAASCR H QG
Sbjct:  359 GDEGVHLCLGNPEVRQWMIADMIRVVRDYGVDWLKWDYNIGYGLGCDAEDHGHQARDGHHAHTLGLYVVFEALRAACPNLMIENCASGGHRVDLGTLRHTHTNWISDYTHRAASCRQHVQG 479          
BLAST of mRNA_P-wetherbeei_contig55163.1.1 vs. uniprot
Match: A0A7V9HKZ6_9CHLR (Alpha-galactosidase n=1 Tax=Chloroflexia bacterium TaxID=2448782 RepID=A0A7V9HKZ6_9CHLR)

HSP 1 Score: 207 bits (528), Expect = 1.570e-60
Identity = 89/121 (73.55%), Postives = 104/121 (85.95%), Query Frame = 1
Query:    1 GREGAHLCLGNPEVQQWVLDEVVRVIRDYGVDWLKWDYNMGYGLGCNDPTHGHQTGDGHYAHTYGLYRVLAAIREACPELVIENCSSGGHRIDLGMLRHSHTSWVSDYTHRAASCRHHSQG 363
            G EG HLCLGNPEVQ+W+  E+ RV+++YGVDWLKWDYN+GYGLGC+   HGHQ  DGHYAHT GLYRVL  +R ACPELVIENC+SGGHR+DLG LRH+HT+W+SDY+HRAASCR H QG
Sbjct:  401 GIEGVHLCLGNPEVQRWMTAEMTRVVQEYGVDWLKWDYNIGYGLGCDADDHGHQREDGHYAHTLGLYRVLDGLRTACPELVIENCASGGHRVDLGTLRHAHTNWLSDYSHRAASCRQHVQG 521          
BLAST of mRNA_P-wetherbeei_contig55163.1.1 vs. uniprot
Match: D1CHX1_THET1 (Glycoside hydrolase clan GH-D n=1 Tax=Thermobaculum terrenum (strain ATCC BAA-798 / YNP1) TaxID=525904 RepID=D1CHX1_THET1)

HSP 1 Score: 203 bits (517), Expect = 4.570e-60
Identity = 87/116 (75.00%), Postives = 96/116 (82.76%), Query Frame = 1
Query:   16 HLCLGNPEVQQWVLDEVVRVIRDYGVDWLKWDYNMGYGLGCNDPTHGHQTGDGHYAHTYGLYRVLAAIREACPELVIENCSSGGHRIDLGMLRHSHTSWVSDYTHRAASCRHHSQG 363
            HLCLGNP+VQ W+  EVVRV+ +YGV WLKWDYNMGY  GCN   HGHQ GDGHYAHT GLYRVLA +RE+CP L+IENC+SGGHR DLGML HSH  W+SDYTHRAASCR H QG
Sbjct:  260 HLCLGNPDVQDWMASEVVRVVHEYGVQWLKWDYNMGYAAGCNREDHGHQAGDGHYAHTMGLYRVLATVRESCPGLIIENCASGGHRADLGMLTHSHIQWLSDYTHRAASCRRHVQG 375          
BLAST of mRNA_P-wetherbeei_contig55163.1.1 vs. uniprot
Match: A0A7C3S3S8_9BACT (Alpha-galactosidase n=1 Tax=Armatimonadetes bacterium TaxID=2033014 RepID=A0A7C3S3S8_9BACT)

HSP 1 Score: 179 bits (455), Expect = 5.870e-50
Identity = 78/121 (64.46%), Postives = 93/121 (76.86%), Query Frame = 1
Query:    1 GREGAHLCLGNPEVQQWVLDEVVRVIRDYGVDWLKWDYNMGYGLGCNDPTHGHQTGDGHYAHTYGLYRVLAAIREACPELVIENCSSGGHRIDLGMLRHSHTSWVSDYTHRAASCRHHSQG 363
            G   AHLC GNP+V +W  + + +VI DYGVDWLKWDYN+ YGLGCNDPTHGHQ GDG YAHT GLY V + +RE  PELV+E C+SGG+RID G+LRH HT W+SD+THRA + R H  G
Sbjct:  412 GGRYAHLCFGNPQVVEWFKERLAKVISDYGVDWLKWDYNIAYGLGCNDPTHGHQEGDGTYAHTLGLYAVKSFLREKFPELVVEGCASGGNRIDFGILRHVHTYWLSDFTHRAVNVRFHLTG 532          
BLAST of mRNA_P-wetherbeei_contig55163.1.1 vs. uniprot
Match: A0A7C2Z4M5_9BACT (Alpha-galactosidase n=1 Tax=Armatimonadetes bacterium TaxID=2033014 RepID=A0A7C2Z4M5_9BACT)

HSP 1 Score: 167 bits (424), Expect = 1.490e-45
Identity = 74/121 (61.16%), Postives = 90/121 (74.38%), Query Frame = 1
Query:    1 GREGAHLCLGNPEVQQWVLDEVVRVIRDYGVDWLKWDYNMGYGLGCNDPTHGHQTGDGHYAHTYGLYRVLAAIREACPELVIENCSSGGHRIDLGMLRHSHTSWVSDYTHRAASCRHHSQG 363
            GR G HLC GNP+V  W  + + +++ DY VDWLKWDYN+ YGLGC+D THGHQ GDG YAHT G+Y V A +RE  P LV+E C+SGGHRID G+LR  HT W+SD+THRAA+ R H  G
Sbjct:  416 GRYG-HLCFGNPQVVAWFKERLAKIVADYEVDWLKWDYNIAYGLGCDDATHGHQDGDGTYAHTQGVYAVKAFLREKFPHLVLEGCASGGHRIDFGILRFVHTYWLSDFTHRAANVRFHLMG 535          
BLAST of mRNA_P-wetherbeei_contig55163.1.1 vs. uniprot
Match: A0A2H5XBV6_9BACT (Alpha-galactosidase n=1 Tax=bacterium HR17 TaxID=2035412 RepID=A0A2H5XBV6_9BACT)

HSP 1 Score: 164 bits (414), Expect = 3.780e-44
Identity = 73/121 (60.33%), Postives = 88/121 (72.73%), Query Frame = 1
Query:    1 GREGAHLCLGNPEVQQWVLDEVVRVIRDYGVDWLKWDYNMGYGLGCNDPTHGHQTGDGHYAHTYGLYRVLAAIREACPELVIENCSSGGHRIDLGMLRHSHTSWVSDYTHRAASCRHHSQG 363
            GR G HLC GNP+V  W  + +  ++  Y VDWLKWDYN+ YGLGCNDPTHGHQ GDG YAHT G+Y V A +R   P LVIE C+SGGHRID G++R  HT W+SD+TH+AA+ R H  G
Sbjct:  416 GRYG-HLCFGNPQVVAWCKERLTHLVAAYDVDWLKWDYNIAYGLGCNDPTHGHQDGDGTYAHTLGVYAVKAFLRTKFPHLVIEGCASGGHRIDFGIVRFVHTYWLSDFTHQAANVRFHLTG 535          
BLAST of mRNA_P-wetherbeei_contig55163.1.1 vs. uniprot
Match: A0A7C4Q2L6_9CHLR (Alpha-galactosidase n=1 Tax=Bellilinea caldifistulae TaxID=360411 RepID=A0A7C4Q2L6_9CHLR)

HSP 1 Score: 130 bits (326), Expect = 5.560e-32
Identity = 56/107 (52.34%), Postives = 76/107 (71.03%), Query Frame = 1
Query:    1 GREGAHLCLGNPEVQQWVLDEVVRVIRDYGVDWLKWDYNMGYGLGCNDPTHGHQTGDGHYAHTYGLYRVLAAIREACPELVIENCSSGGHRIDLGMLRHSHTSWVSD 321
            GR   ++C+GNP  ++W    + R+IR++G DW+K D+N+  G GCN   HGHQ GDG Y H  G Y VL  IR+  P++V+ENCSSGG RIDLGMLRH+H +++SD
Sbjct:  376 GRPLGYVCMGNPAAREWAYQTLARLIREFGADWIKVDFNLDPGAGCNRTDHGHQEGDGLYEHYRGYYSVLTRIRQDFPDVVLENCSSGGLRIDLGMLRHTHMTFLSD 482          
BLAST of mRNA_P-wetherbeei_contig55163.1.1 vs. uniprot
Match: A0A1M5C7H0_9THEO (Alpha-galactosidase n=1 Tax=Caldanaerobius fijiensis DSM 17918 TaxID=1121256 RepID=A0A1M5C7H0_9THEO)

HSP 1 Score: 125 bits (314), Expect = 2.300e-30
Identity = 55/107 (51.40%), Postives = 76/107 (71.03%), Query Frame = 1
Query:    1 GREGAHLCLGNPEVQQWVLDEVVRVIRDYGVDWLKWDYNMGYGLGCNDPTHGHQTGDGHYAHTYGLYRVLAAIREACPELVIENCSSGGHRIDLGMLRHSHTSWVSD 321
            G+   ++C GNPEVQ+W    + R++ +Y  DW+K D+N+  G GCN   HGH  GDG Y H  G YRVLA +RE  PEL+IENCSSGG R+DLG++R+++ ++VSD
Sbjct:  333 GKSLGYICFGNPEVQEWAFRMLDRIVTEYTCDWIKLDFNLDPGAGCNRIDHGHGEGDGLYEHYMGYYRVLARLRERHPELLIENCSSGGLRMDLGIMRNAYNTYVSD 439          
BLAST of mRNA_P-wetherbeei_contig55163.1.1 vs. uniprot
Match: UPI001877FE86 (alpha-galactosidase n=1 Tax=Escherichia coli TaxID=562 RepID=UPI001877FE86)

HSP 1 Score: 112 bits (281), Expect = 1.610e-29
Identity = 46/67 (68.66%), Postives = 53/67 (79.10%), Query Frame = 1
Query:    1 GREGAHLCLGNPEVQQWVLDEVVRVIRDYGVDWLKWDYNMGYGLGCNDPTHGHQTGDGHYAHTYGLY 201
            G   AHLC GNP+V +W  + + +VI DYGVDWLKWDYN+ YGLGCNDPTHGHQ GDG YAHT G+Y
Sbjct:   25 GGRYAHLCFGNPQVVEWFKERLAKVIADYGVDWLKWDYNIAYGLGCNDPTHGHQEGDGTYAHTQGVY 91          
BLAST of mRNA_P-wetherbeei_contig55163.1.1 vs. uniprot
Match: A0A355SHB8_9CLOT (Alpha-galactosidase (Fragment) n=1 Tax=Clostridiaceae bacterium TaxID=1898204 RepID=A0A355SHB8_9CLOT)

HSP 1 Score: 122 bits (306), Expect = 2.630e-29
Identity = 52/107 (48.60%), Postives = 73/107 (68.22%), Query Frame = 1
Query:    1 GREGAHLCLGNPEVQQWVLDEVVRVIRDYGVDWLKWDYNMGYGLGCNDPTHGHQTGDGHYAHTYGLYRVLAAIREACPELVIENCSSGGHRIDLGMLRHSHTSWVSD 321
            G+   ++C+GNP   +W    V ++I DYG DW+K+D+N+  G GCN   HGH  GDG Y H  G YR+L+ IRE  P + IENCSSGG R+DLG++++ H S++SD
Sbjct:  325 GKPLGYMCMGNPGTVKWAFSVVEKLINDYGADWIKFDFNLNPGAGCNRTDHGHGEGDGLYEHYRGYYRLLSMIREKYPNVFIENCSSGGLRVDLGIMKYVHASFLSD 431          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig55163.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7V9VW18_9CHLR1.130e-6071.90Alpha-galactosidase n=1 Tax=Chloroflexia bacterium... [more]
A0A7V9HKZ6_9CHLR1.570e-6073.55Alpha-galactosidase n=1 Tax=Chloroflexia bacterium... [more]
D1CHX1_THET14.570e-6075.00Glycoside hydrolase clan GH-D n=1 Tax=Thermobaculu... [more]
A0A7C3S3S8_9BACT5.870e-5064.46Alpha-galactosidase n=1 Tax=Armatimonadetes bacter... [more]
A0A7C2Z4M5_9BACT1.490e-4561.16Alpha-galactosidase n=1 Tax=Armatimonadetes bacter... [more]
A0A2H5XBV6_9BACT3.780e-4460.33Alpha-galactosidase n=1 Tax=bacterium HR17 TaxID=2... [more]
A0A7C4Q2L6_9CHLR5.560e-3252.34Alpha-galactosidase n=1 Tax=Bellilinea caldifistul... [more]
A0A1M5C7H0_9THEO2.300e-3051.40Alpha-galactosidase n=1 Tax=Caldanaerobius fijiens... [more]
UPI001877FE861.610e-2968.66alpha-galactosidase n=1 Tax=Escherichia coli TaxID... [more]
A0A355SHB8_9CLOT2.630e-2948.60Alpha-galactosidase (Fragment) n=1 Tax=Clostridiac... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig55163contigP-wetherbeei_contig55163:29..525 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog525904.Tter_2448
Preferred namerafA
PFAMsGlyco_hydro_36C,Glyco_hydro_36N,Melibiase
Model size497
Max annot lvl2|Bacteria
KEGG rclassRC00049,RC00059,RC00451
KEGG koko:K07407
KEGG ReactionR01101,R01103,R01104,R01194,R01329,R02926,R03634,R04019,R04470,R05549,R05961,R06091
KEGG Pathwayko00052,ko00561,ko00600,ko00603,map00052,map00561,map00600,map00603
Hectar predicted targeting categoryother localisation
Exons1
Evalue4.83e-39
EggNOG OGsCOG3345@1|root,COG3345@2|Bacteria,2NRYT@2323|unclassified Bacteria
EC3.2.1.22
DescriptionMelibiase
Cds size276
COG categoryG
BRITEko00000,ko00001,ko01000
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186822.7575562-UTR-P-wetherbeei_contig55163:28..1321683186822.7575562-UTR-P-wetherbeei_contig55163:28..132Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig55163 29..132 -
1683186822.7762904-UTR-P-wetherbeei_contig55163:408..5251683186822.7762904-UTR-P-wetherbeei_contig55163:408..525Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig55163 409..525 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186822.7682369-CDS-P-wetherbeei_contig55163:132..4081683186822.7682369-CDS-P-wetherbeei_contig55163:132..408Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig55163 133..408 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig55163.1.1prot_P-wetherbeei_contig55163.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig55163 133..408 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig55163.1.1

>prot_P-wetherbeei_contig55163.1.1 ID=prot_P-wetherbeei_contig55163.1.1|Name=mRNA_P-wetherbeei_contig55163.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=92bp
MGYGLGCNDPTHGHQTGDGHYAHTYGLYRVLAAIREACPELVIENCSSGG
HRIDLGMLRHSHTSWVSDYTHRAASCRHHSQGLDSSFPRNM*
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mRNA from alignment at P-wetherbeei_contig55163:29..525-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig55163.1.1 ID=mRNA_P-wetherbeei_contig55163.1.1|Name=mRNA_P-wetherbeei_contig55163.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=497bp|location=Sequence derived from alignment at P-wetherbeei_contig55163:29..525- (Phaeothamnion wetherbeei SAG_119_79)
GGCCGCGAGGGGGCGCACCTGTGTCTGGGGAACCCCGAGGTCCAGCAGTG GGTTCTCGACGAGGTGGTGCGGGTGATCCGTGATTACGGCGTCGACTGGC TGAAGTGGGACTACAACATGGGGTATGGGCTCGGCTGCAACGATCCGACC CACGGCCACCAGACAGGCGATGGCCACTACGCCCATACGTACGGTTTGTA TCGTGTGCTTGCAGCGATACGGGAGGCGTGCCCTGAGCTCGTCATCGAGA ACTGTTCGAGTGGCGGGCATCGCATTGATCTCGGAATGCTCCGCCACTCA CACACATCCTGGGTTTCGGACTATACCCATCGGGCAGCGAGCTGCCGGCA TCACAGTCAGGGGCTGGACTCTTCCTTCCCCAGGAACATGTGAACACGTG GGTTCTCGAGCAGCGAAGCGAGTACGAGTTTCTGAGCCGGATGGGAGGCG CCTTCGGCTTTTCATCCAACCTGGGGCGTTGGTCGGCAAGCGAGCGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig55163:29..525-

>mRNA_P-wetherbeei_contig55163.1.1 ID=mRNA_P-wetherbeei_contig55163.1.1|Name=mRNA_P-wetherbeei_contig55163.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=276bp|location=Sequence derived from alignment at P-wetherbeei_contig55163:29..525- (Phaeothamnion wetherbeei SAG_119_79)
ATGGGGTATGGGCTCGGCTGCAACGATCCGACCCACGGCCACCAGACAGG
CGATGGCCACTACGCCCATACGTACGGTTTGTATCGTGTGCTTGCAGCGA
TACGGGAGGCGTGCCCTGAGCTCGTCATCGAGAACTGTTCGAGTGGCGGG
CATCGCATTGATCTCGGAATGCTCCGCCACTCACACACATCCTGGGTTTC
GGACTATACCCATCGGGCAGCGAGCTGCCGGCATCACAGTCAGGGGCTGG
ACTCTTCCTTCCCCAGGAACATGTGA
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