mRNA_P-wetherbeei_contig55159.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig55159.1.1
Unique NamemRNA_P-wetherbeei_contig55159.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig55159.1.1 vs. uniprot
Match: A0A1F3YSV1_9PROT (Uncharacterized protein n=2 Tax=unclassified Betaproteobacteria TaxID=33809 RepID=A0A1F3YSV1_9PROT)

HSP 1 Score: 124 bits (310), Expect = 2.820e-33
Identity = 61/119 (51.26%), Postives = 79/119 (66.39%), Query Frame = 1
Query:    1 IGVGKAEVAPYVGAYREGTGAEGLLVELRAYMAARGLGRQAAVNEPEDHVAALCELMRHMIAVQHASLDEQRECFHRFIHPGAVRLCEAIEASPNANFYKRVARFSRAFFELEHTAFGM 357
            +G GKAEV PY+  Y      +  LVELR  +   GLGR+   NEPEDH+A +CE MR  IAVQH +LDEQ+  F RF++ G +  C+A+ AS NA+FY+ VA F+R FFELE  AF +
Sbjct:   79 VGTGKAEVTPYLTHYVIKYATDNPLVELRQQLIRWGLGRRENANEPEDHIAGICEAMRFAIAVQHRALDEQKAFFDRFLYRGGIAFCDAVSASANASFYRSVAAFAREFFELEREAFDL 197          
BLAST of mRNA_P-wetherbeei_contig55159.1.1 vs. uniprot
Match: A0A1F4BJL0_9PROT (Uncharacterized protein n=1 Tax=Betaproteobacteria bacterium RIFCSPLOWO2_02_FULL_67_19 TaxID=1797491 RepID=A0A1F4BJL0_9PROT)

HSP 1 Score: 123 bits (308), Expect = 5.350e-33
Identity = 61/119 (51.26%), Postives = 82/119 (68.91%), Query Frame = 1
Query:    1 IGVGKAEVAPYVGAYREGTGAEGLLVELRAYMAARGLGRQAAVNEPEDHVAALCELMRHMIAVQHASLDEQRECFHRFIHPGAVRLCEAIEASPNANFYKRVARFSRAFFELEHTAFGM 357
            +G G+AEV PY GAY   +  +  LVE+R ++ A+GL R+ +V+EPEDH+AALCE+MRH+I    A+   QR+ F  F+ P A  LC+AI +  NA FY   ARF++ FFELEHTAF M
Sbjct:   79 VGTGRAEVTPYTGAYTLASALDNPLVEIREFLDAQGLARKQSVHEPEDHIAALCEVMRHLILRDDAAA--QRKLFESFLWPAASVLCDAISSHRNARFYATAARFAKTFFELEHTAFDM 195          
BLAST of mRNA_P-wetherbeei_contig55159.1.1 vs. uniprot
Match: A0A521VI42_9PROT (Molecular chaperone n=3 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A521VI42_9PROT)

HSP 1 Score: 117 bits (294), Expect = 1.320e-30
Identity = 60/119 (50.42%), Postives = 79/119 (66.39%), Query Frame = 1
Query:    1 IGVGKAEVAPYVGAYREGTGAEGLLVELRAYMAARGLGRQAAVNEPEDHVAALCELMRHMIAVQHASLDEQRECFHRFIHPGAVRLCEAIEASPNANFYKRVARFSRAFFELEHTAFGM 357
            IG G+AEV PY  AY   +     LVE+R ++ A+GL R+ +V+EPEDH+AALCE+MRH+I    A+   QR+ F  F+ P A  LC+AI +  NA FY   ARF++ FFELEH AF M
Sbjct:  104 IGTGRAEVTPYTAAYTLTSALANPLVEIREFLDAQGLARKQSVHEPEDHIAALCEVMRHLILRDDAAA--QRKLFESFLWPAASGLCDAISSHRNARFYAAAARFAKTFFELEHAAFDM 220          
BLAST of mRNA_P-wetherbeei_contig55159.1.1 vs. uniprot
Match: A0A537D9S9_9PROT (Molecular chaperone n=5 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A537D9S9_9PROT)

HSP 1 Score: 116 bits (291), Expect = 3.120e-30
Identity = 63/119 (52.94%), Postives = 79/119 (66.39%), Query Frame = 1
Query:    1 IGVGKAEVAPYVGAYREGTGAEGLLVELRAYMAARGLGRQAAVNEPEDHVAALCELMRHMIAVQHASLDEQRECFHRFIHPGAVRLCEAIEASPNANFYKRVARFSRAFFELEHTAFGM 357
            +G GKA V  Y  AY     +E  L ELRA +AA GL R+   +EPEDH+AALCE MRH+IA Q A L +Q+  F R+I P A RLC+AI  S   +FY+ VARF+++FFELE  AF M
Sbjct:   95 VGTGKAPVTLYACAYSIRYTSEAPLAELRADLAALGLARRGGTSEPEDHIAALCETMRHLIAEQKAELADQQRFFSRWIQPAAGRLCDAIAESEITHFYEPVARFAKSFFELELAAFEM 213          
BLAST of mRNA_P-wetherbeei_contig55159.1.1 vs. uniprot
Match: A0A537A4S6_9PROT (Molecular chaperone n=1 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A537A4S6_9PROT)

HSP 1 Score: 111 bits (277), Expect = 2.330e-28
Identity = 59/119 (49.58%), Postives = 75/119 (63.03%), Query Frame = 1
Query:    1 IGVGKAEVAPYVGAYREGTGAEGLLVELRAYMAARGLGRQAAVNEPEDHVAALCELMRHMIAVQHASLDEQRECFHRFIHPGAVRLCEAIEASPNANFYKRVARFSRAFFELEHTAFGM 357
            +G G+A +  Y  AY      E  L  LR  +AA GL R+    EPEDH+AALC+ MRH+IA Q   L+EQR  F R+I P A  LC+AIE S + +FYK V R ++AFF LEH+AF M
Sbjct:   74 VGTGRAPITLYTSAYSVRYTNEMPLAPLRGELAALGLARRNEAAEPEDHIAALCDAMRHLIAEQQRDLEEQRRFFERWIQPIAEPLCDAIEKSEHTSFYKLVGRTAKAFFSLEHSAFEM 192          
BLAST of mRNA_P-wetherbeei_contig55159.1.1 vs. uniprot
Match: A0A536XXW6_9PROT (Uncharacterized protein n=2 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A536XXW6_9PROT)

HSP 1 Score: 110 bits (275), Expect = 5.300e-28
Identity = 59/119 (49.58%), Postives = 74/119 (62.18%), Query Frame = 1
Query:    1 IGVGKAEVAPYVGAYREGTGAEGLLVELRAYMAARGLGRQAAVNEPEDHVAALCELMRHMIAVQHASLDEQRECFHRFIHPGAVRLCEAIEASPNANFYKRVARFSRAFFELEHTAFGM 357
            +G GKA V  YV AY      E  L ELRA +A+ GL R+    EPEDH+AALC+ MRH+IA Q   L+EQ+  F R+I P    LC AI+AS   +FY+ VA  ++AFF LE  AF M
Sbjct:   79 VGTGKAPVTLYVCAYSIRYTNETPLAELRADLASLGLARREQAGEPEDHIAALCDTMRHLIAQQQRPLEEQQRFFERWIRPNYEALCSAIDASERTSFYRHVAHMAKAFFSLEQAAFEM 197          
BLAST of mRNA_P-wetherbeei_contig55159.1.1 vs. uniprot
Match: A0A521VIA5_9PROT (Molecular chaperone n=1 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A521VIA5_9PROT)

HSP 1 Score: 108 bits (269), Expect = 4.020e-27
Identity = 56/119 (47.06%), Postives = 75/119 (63.03%), Query Frame = 1
Query:    1 IGVGKAEVAPYVGAYREGTGAEGLLVELRAYMAARGLGRQAAVNEPEDHVAALCELMRHMIAVQHASLDEQRECFHRFIHPGAVRLCEAIEASPNANFYKRVARFSRAFFELEHTAFGM 357
             G G+AE++ Y GAYR     +  LV+LR +MA  G  R+  V EPEDHVAALCE+MRH+I     +   QR  F   + PG + LC+A+ +   A+FY  VAR ++ FFELEH+AF M
Sbjct:   79 FGTGRAEISLYAGAYRRAHAGDNPLVQLRDFMAQHGFVRRNGVVEPEDHVAALCEVMRHLIMQDDVAA--QRTLFAAHLWPGLLPLCDAVSSHGRASFYAPVARLAKTFFELEHSAFDM 195          
BLAST of mRNA_P-wetherbeei_contig55159.1.1 vs. uniprot
Match: A0A1F4FIN7_9PROT (Uncharacterized protein n=2 Tax=unclassified Betaproteobacteria TaxID=33809 RepID=A0A1F4FIN7_9PROT)

HSP 1 Score: 107 bits (266), Expect = 1.110e-26
Identity = 56/119 (47.06%), Postives = 74/119 (62.18%), Query Frame = 1
Query:    1 IGVGKAEVAPYVGAYREGTGAEGLLVELRAYMAARGLGRQAAVNEPEDHVAALCELMRHMIAVQHASLDEQRECFHRFIHPGAVRLCEAIEASPNANFYKRVARFSRAFFELEHTAFGM 357
            +G G+AE+  Y GAY      +  LV+LR ++ A GL R+ AV+EPEDH+AALCE+MRH+I    A+   QRE F  ++      LC+AI   P A FY+  AR +R FFELEH A  M
Sbjct:   78 VGTGRAEITLYTGAYTLQGVLDNPLVQLRDFLLAHGLARRHAVHEPEDHIAALCEVMRHLIVRSDAAA--QREFFQGYLAQAGPVLCDAISNHPKAGFYRHAARLARTFFELEHAAIEM 194          
BLAST of mRNA_P-wetherbeei_contig55159.1.1 vs. uniprot
Match: A0A0S8B7J5_9PROT (Uncharacterized protein n=1 Tax=Betaproteobacteria bacterium SG8_39 TaxID=1703390 RepID=A0A0S8B7J5_9PROT)

HSP 1 Score: 106 bits (264), Expect = 2.700e-26
Identity = 54/119 (45.38%), Postives = 74/119 (62.18%), Query Frame = 1
Query:    1 IGVGKAEVAPYVGAYREGTGAEGLLVELRAYMAARGLGRQAAVNEPEDHVAALCELMRHMIAVQHASLDEQRECFHRFIHPGAVRLCEAIEASPNANFYKRVARFSRAFFELEHTAFGM 357
            +G GKA V PY+  Y     ++  L  LR  +   G+ R+  + E EDHVA L E MR++IAVQH SL+ Q++ F RF++ GAV  C A+  S  A+FYKRVAR +R F ++E  AF M
Sbjct:   84 VGTGKAAVTPYLSNYVLRHQSDTPLAALRETLRGLGIARREGIGEYEDHVAGLMETMRYLIAVQHRSLEVQKDFFERFVYDGAVSFCVALSGSEQASFYKRVARLTRIFLDIEKNAFSM 202          
BLAST of mRNA_P-wetherbeei_contig55159.1.1 vs. uniprot
Match: A0A1F4FAR7_9PROT (Uncharacterized protein n=1 Tax=Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_68_20 TaxID=1797505 RepID=A0A1F4FAR7_9PROT)

HSP 1 Score: 105 bits (261), Expect = 7.610e-26
Identity = 54/119 (45.38%), Postives = 72/119 (60.50%), Query Frame = 1
Query:    1 IGVGKAEVAPYVGAYREGTGAEGLLVELRAYMAARGLGRQAAVNEPEDHVAALCELMRHMIAVQHASLDEQRECFHRFIHPGAVRLCEAIEASPNANFYKRVARFSRAFFELEHTAFGM 357
            +G GKA V  Y  AY     +E  L ELR  +A   L R++   EPEDH+AALC+ MRH+IA + A L EQ+  F R++ P A  LC AI  +    FY+ VA F+ +F E+EH+AF M
Sbjct:   84 VGTGKAPVTLYTSAYTIRYSSEAPLAELRGELAELALARRSEATEPEDHIAALCDTMRHLIATKGADLAEQKRFFERWVWPAAEPLCSAIARNEKTVFYRAVASFAMSFLEVEHSAFEM 202          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig55159.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1F3YSV1_9PROT2.820e-3351.26Uncharacterized protein n=2 Tax=unclassified Betap... [more]
A0A1F4BJL0_9PROT5.350e-3351.26Uncharacterized protein n=1 Tax=Betaproteobacteria... [more]
A0A521VI42_9PROT1.320e-3050.42Molecular chaperone n=3 Tax=Betaproteobacteria bac... [more]
A0A537D9S9_9PROT3.120e-3052.94Molecular chaperone n=5 Tax=Betaproteobacteria bac... [more]
A0A537A4S6_9PROT2.330e-2849.58Molecular chaperone n=1 Tax=Betaproteobacteria bac... [more]
A0A536XXW6_9PROT5.300e-2849.58Uncharacterized protein n=2 Tax=Betaproteobacteria... [more]
A0A521VIA5_9PROT4.020e-2747.06Molecular chaperone n=1 Tax=Betaproteobacteria bac... [more]
A0A1F4FIN7_9PROT1.110e-2647.06Uncharacterized protein n=2 Tax=unclassified Betap... [more]
A0A0S8B7J5_9PROT2.700e-2645.38Uncharacterized protein n=1 Tax=Betaproteobacteria... [more]
A0A1F4FAR7_9PROT7.610e-2645.38Uncharacterized protein n=1 Tax=Betaproteobacteria... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig55159contigP-wetherbeei_contig55159:164..526 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog795666.MW7_2456
Preferred nametorD
PFAMsNitrate_red_del
Model size363
Max annot lvl28216|Betaproteobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.17e-22
EggNOG OGsCOG3381@1|root,COG3381@2|Bacteria,1MWWM@1224|Proteobacteria,2VJ39@28216|Betaproteobacteria,1K4NY@119060|Burkholderiaceae
DescriptionNitrate reductase delta subunit
Cds size363
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186822.7238517-CDS-P-wetherbeei_contig55159:163..5261683186822.7238517-CDS-P-wetherbeei_contig55159:163..526Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig55159 164..526 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig55159.1.1prot_P-wetherbeei_contig55159.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig55159 164..526 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig55159.1.1

>prot_P-wetherbeei_contig55159.1.1 ID=prot_P-wetherbeei_contig55159.1.1|Name=mRNA_P-wetherbeei_contig55159.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=121bp
IGVGKAEVAPYVGAYREGTGAEGLLVELRAYMAARGLGRQAAVNEPEDHV
AALCELMRHMIAVQHASLDEQRECFHRFIHPGAVRLCEAIEASPNANFYK
RVARFSRAFFELEHTAFGMA*
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mRNA from alignment at P-wetherbeei_contig55159:164..526-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig55159.1.1 ID=mRNA_P-wetherbeei_contig55159.1.1|Name=mRNA_P-wetherbeei_contig55159.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=363bp|location=Sequence derived from alignment at P-wetherbeei_contig55159:164..526- (Phaeothamnion wetherbeei SAG_119_79)
ATCGGCGTGGGCAAGGCCGAGGTGGCGCCCTACGTGGGCGCCTACAGGGA GGGTACCGGGGCGGAAGGCCTGCTGGTGGAACTGCGGGCCTACATGGCGG CGCGCGGCCTCGGGAGGCAGGCCGCGGTGAACGAGCCCGAGGACCACGTG GCTGCGCTATGCGAATTGATGCGGCACATGATCGCGGTGCAGCACGCTTC GCTCGACGAGCAGCGGGAGTGCTTCCACCGGTTCATCCATCCGGGGGCGG TGCGGTTGTGCGAGGCGATCGAGGCCTCGCCGAACGCTAATTTTTACAAG CGGGTCGCGCGCTTTTCGCGGGCTTTTTTCGAACTCGAACATACGGCGTT CGGGATGGCCTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig55159:164..526-

>mRNA_P-wetherbeei_contig55159.1.1 ID=mRNA_P-wetherbeei_contig55159.1.1|Name=mRNA_P-wetherbeei_contig55159.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=363bp|location=Sequence derived from alignment at P-wetherbeei_contig55159:164..526- (Phaeothamnion wetherbeei SAG_119_79)
ATCGGCGTGGGCAAGGCCGAGGTGGCGCCCTACGTGGGCGCCTACAGGGA
GGGTACCGGGGCGGAAGGCCTGCTGGTGGAACTGCGGGCCTACATGGCGG
CGCGCGGCCTCGGGAGGCAGGCCGCGGTGAACGAGCCCGAGGACCACGTG
GCTGCGCTATGCGAATTGATGCGGCACATGATCGCGGTGCAGCACGCTTC
GCTCGACGAGCAGCGGGAGTGCTTCCACCGGTTCATCCATCCGGGGGCGG
TGCGGTTGTGCGAGGCGATCGAGGCCTCGCCGAACGCTAATTTTTACAAG
CGGGTCGCGCGCTTTTCGCGGGCTTTTTTCGAACTCGAACATACGGCGTT
CGGGATGGCCTGA
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