mRNA_P-wetherbeei_contig55150.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig55150.1.1
Unique NamemRNA_P-wetherbeei_contig55150.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig55150.1.1 vs. uniprot
Match: A0A3D1U1K5_9CHLR (Uncharacterized protein n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A3D1U1K5_9CHLR)

HSP 1 Score: 145 bits (366), Expect = 4.480e-38
Identity = 85/174 (48.85%), Postives = 114/174 (65.52%), Query Frame = 1
Query:    1 PFELEPYRLLVAVVIAGWLAALLVDERVTMKPTGLRGPIALLLLATLGSVAVNPANVAGHQ--SNVLKSLTFLLSFILVLVLISSVVNSREAVDRIVKVLVGSGAIVAVFAIIESRTDWNAFNDLGKIIPILKLN-EVPVIPGRGARLRVFASAQHSIALSAALVMLVPLAAYL 513
            PF+LEPYRLLVA+ IA W+ +LL+D RV ++ +GL GP+ LL+ A L S A+N   ++     ++V K LTF +SF+LV  LI SV      V  ++K+LV  G ++AV A+IESR  +N FN L  + P LK N  +  +P RG RLR +  A+H IALSAAL MLVP A YL
Sbjct:   85 PFQLEPYRLLVAIFIAFWVTSLLIDPRVRLRRSGLEGPVFLLVFAALASDALNAGTISAEYLGNSVAKGLTFFVSFLLVFYLIVSVTQRIADVTPLLKLLVLGGVVIAVLAVIESRNGYNPFNQLNSVFPFLKPNFSLKTLPVRGTRLRAYGPAEHPIALSAALAMLVPFAIYL 258          
BLAST of mRNA_P-wetherbeei_contig55150.1.1 vs. uniprot
Match: UPI001930A17B (O-antigen ligase family protein n=1 Tax=Solirubrobacter sp. CPCC 204708 TaxID=2282478 RepID=UPI001930A17B)

HSP 1 Score: 140 bits (354), Expect = 4.110e-36
Identity = 83/171 (48.54%), Postives = 114/171 (66.67%), Query Frame = 1
Query:    7 ELEPYRLLVAVVIAGWLAALLVDERVTMKPTGLRGPIALLLLATLGSVAVNPANVAGHQSNVLKSLTFLLSFILVLVLISSVVNSREAVDRIVKVLVGSGAIVAVFAIIESRTDWNAFNDLGKIIPILKLNEVPVIP---GRGARLRVFASAQHSIALSAALVMLVPLAAY 510
             LEPYRLLVA+++AGWL ALLVD RV ++ +G+ G +A +LL  +GSV  NP      QS VLK++TFL SF++V  ++ SVV ++ A+D + K LV  GAI+ + AI+ESRT ++ F  + K+IPIL  +  P      GRG+  R    A+H IALSA LVML+PL  Y
Sbjct:   96 SLEPYRLLVALIVAGWLGALLVDSRVRVRKSGIDGTLACILLVVVGSVLTNPERAGPLQSEVLKAVTFLASFMVVFYVVVSVVRTQSAIDLLAKTLVMGGAIIGLLAIVESRTGFSPFAYVDKVIPILVGD--PSFESGLGRGSATRTVGPAEHPIALSAVLVMLIPLGVY 264          
BLAST of mRNA_P-wetherbeei_contig55150.1.1 vs. uniprot
Match: A0A7V9T9Z5_9ACTN (O-antigen ligase family protein n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A7V9T9Z5_9ACTN)

HSP 1 Score: 139 bits (349), Expect = 1.070e-35
Identity = 85/177 (48.02%), Postives = 116/177 (65.54%), Query Frame = 1
Query:    1 PFELEPYRLLVAVVIAGWLAALLVDERVTMKPTGLRGPIALLLLATLGSVAVNPANVA--GHQSNVLKSLTFLLSFILVLVLISSVVNSREAVDRIVKVLVGSGAIVAVFAIIESRTDWNAFNDLGKIIPILK----LNEVPVIPGRGARLRVFASAQHSIALSAALVMLVPLAAYL 513
            PF+LE YR+ VA+++A WL+ALL+D  V ++ T + GP+ L   A LGS+      +   G  SNVLK + FL SF LV  LI+SVV  R A+D ++K LV  GA +AVF++IE+R  +N F+ L +I P L     L+E  +   RG RLRV+ASA+H IAL+A L ML+PLA YL
Sbjct:   60 PFDLELYRIGVALLVALWLSALLIDPEVRLRGTPVDGPLILFAFAVLGSIVTGTGLIERLGLASNVLKDVLFLASFYLVFYLIASVVRGRGAIDAVIKTLVAGGAAIAVFSLIEARAGYNVFDQLERIFPFLSFQGGLDEEGI--ARGVRLRVYASAEHPIALAAVLAMLLPLALYL 234          
BLAST of mRNA_P-wetherbeei_contig55150.1.1 vs. uniprot
Match: UPI000421E59F (O-antigen ligase family protein n=1 Tax=Solirubrobacter soli TaxID=363832 RepID=UPI000421E59F)

HSP 1 Score: 126 bits (316), Expect = 7.400e-31
Identity = 73/180 (40.56%), Postives = 116/180 (64.44%), Query Frame = 1
Query:    1 PFELEPYRLLVAVVIAGWLAALLVD-ERVTMKPTGLRGPIALLLLATLGSVAVNPANVA--GHQSNVLKSLTFLLSFILVLVLISSVVNSREAVDRIVKVLVGSGAIVAVFAIIESRTDWNAFNDLGKIIPILKLN--EVPV-IPGRGARLRVFASAQHSIALSAALVMLVPLAAYLAVR 522
            PF+LEPYR +V VV   W+  +L + +++ ++P+GLRGP+  L +     VA N   +   G   +VL  ++FL S+I+V++LI +V+ +R+ +DR +K+L+  GA+V  F ++E++T +N FN L ++IPI + +  +VP  +  RG+  RV ASAQH IAL  AL  L+PL  YL  R
Sbjct:   89 PFQLEPYRAMVGVVAIAWVTTMLAEPKKLPLRPSGLRGPLLFLWIVIAAGVASNIGTIQARGVMMDVLFKISFLASYIVVMLLIGNVIRTRQDIDRAIKILMFGGAVVGFFTLVENKTGFNVFNHLQQVIPIFRFDPSQVPTYLEQRGSGNRVMASAQHPIALGTALATLLPLGLYLGFR 268          
BLAST of mRNA_P-wetherbeei_contig55150.1.1 vs. uniprot
Match: A0A535HPF7_9CHLR (Uncharacterized protein (Fragment) n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A535HPF7_9CHLR)

HSP 1 Score: 105 bits (261), Expect = 4.190e-24
Identity = 63/172 (36.63%), Postives = 100/172 (58.14%), Query Frame = 1
Query:    1 PFELEPYRLLVAVVIAGWLAALLVDERVTMKPTGLRGPIALLLLATLGSVAVNPANVAGHQSNVLKSLTFLLSFILVLVLISSVVNSREAVDRIVKVLVGSGAIVAVFAIIESRTDWNAFNDLGKIIPILKLN--EVPVIPGRGARLRVFASAQHSIALSAALVMLVPLAAY 510
            PF LE YR++VA+V   WL +LL+D RV ++ +GL  P+   +   + S+ VN         ++ K LTF +S+++V  L+ S++     +D +  +L   GA++  F + ES T +N FN L  I+PI+  +  + P +  RGA +R + S QH IA  AALV+L+P A Y
Sbjct:   84 PFNLELYRVVVAIVFVAWLTSLLIDRRVRVRASGLEAPLLAYIAVIVFSLVVNTGRANAVGRDLEKVLTFFVSYVVVFYLVVSLLRRARDIDFLAGLLAAGGAVLGFFGVFESVTHYNVFNHLKMILPIMTYDAGQAPTL-FRGA-IRAYGSGQHPIAFGAALVLLLPFAVY 253          
BLAST of mRNA_P-wetherbeei_contig55150.1.1 vs. uniprot
Match: UPI0013C3F807 (phage tail tape measure protein n=1 Tax=Gryllotalpicola protaetiae TaxID=2419771 RepID=UPI0013C3F807)

HSP 1 Score: 90.1 bits (222), Expect = 7.390e-18
Identity = 65/173 (37.57%), Postives = 96/173 (55.49%), Query Frame = 1
Query:    1 PFELEPYRLLVAVVIAGWLAALLVDERVTMKPTGLRGPIALLLLATLGSVAVNPANVA--GHQSNVLKSLTFLLSFILVLVLISSVVNSREAVDRIVKVLVGSGAIVAVFAIIESRTDWNAFNDLGKIIPILKLNEVPVIPGRGARLRVFASAQHSIALSAALVMLVPLAAYL 513
            PF+LEPYR+++ +++   + ALL+D R T KP      I    LA + S+A N A ++  G    VL +L      I V  ++  ++     V  +++ LV S AIVA FA++E  T+ N F DLGK++P LKL        R    R +AS+QH IALS  L M++P A +L
Sbjct:   74 PFQLEPYRVVIVLIVIAMVVALLIDPRFTWKPVKFGVSIGAFFLAMVLSIATNVAYISENGLGGAVLGNLINFGLLISVFFIVRQLLRGEGRVLLLIQFLVWSAAIVAFFAVVEKVTNVNVFLDLGKVLP-LKLISDQTQSFRAGGDRSYASSQHPIALSVMLCMVLPFAVWL 245          
BLAST of mRNA_P-wetherbeei_contig55150.1.1 vs. uniprot
Match: UPI001BE7CE8A (O-antigen ligase family protein n=1 Tax=Agromyces sp. ISL-38 TaxID=2819107 RepID=UPI001BE7CE8A)

HSP 1 Score: 89.4 bits (220), Expect = 1.410e-17
Identity = 61/174 (35.06%), Postives = 94/174 (54.02%), Query Frame = 1
Query:    1 PFELEPYRLLVAVVIAGWLAALLVDERVTMKPTGLRGPIALLLLATLGSVAVNPANVA--GHQSNVLKSLTFLLSFILVLVLISSVVNSREAVDRIVKVLVGSGAIVAVFAIIESRTDWNAFNDLGKIIPILKLNEVPVIPGRGARLRVFASAQHSIALSAALVMLVPLAAYLA 516
            PF+LEPYRL++ +V+   + AL++   V  +P     PI +LL+  L S  VN   +A  G     +  ++ LL+ + V      ++ S   V  +V  +  +G +V+ FA+IE  +  N F  LG ++P+  L E   +   G   R F SAQH IAL+ AL +L+PLA YLA
Sbjct:  109 PFQLEPYRLVLGIVVVALVVALILKPEVRWRPVAFGWPIGILLVTVLVSFVVNGMELANQGLVETAIGGISQLLAMLAVFYCFRLLLRSERDVMLLVTFITWAGVVVSFFALIERVSKMNVFLMLGDVLPLTLLREGGDVSRAGVT-RAFGSAQHPIALAVALCILIPLAIYLA 281          
BLAST of mRNA_P-wetherbeei_contig55150.1.1 vs. uniprot
Match: A0A4Q7MKA3_9MICO (O-antigen ligase-like membrane protein n=1 Tax=Agromyces ramosus TaxID=33879 RepID=A0A4Q7MKA3_9MICO)

HSP 1 Score: 87.8 bits (216), Expect = 4.880e-17
Identity = 63/174 (36.21%), Postives = 90/174 (51.72%), Query Frame = 1
Query:    1 PFELEPYRLLVAVVIAGWLAALLVDERVTMKPTGLRGPIALLLLATLGSVAVNPANVA--GHQSNVLKSLTFLLSFILVLVLISSVVNSREAVDRIVKVLVGSGAIVAVFAIIESRTDWNAFNDLGKIIPILKLNEVPVIPGRGARLRVFASAQHSIALSAALVMLVPLAAYLA 516
            PF+LEPYRL++ +V+   L ALL       +P     PIA+LL+    S  VN   +A  G     +  +T LL  + V      ++     V  +V  L  +G +V+ FA+IE  +  N F  LG ++P+  L E   +   G   R F SAQH IAL+ AL +L+PLA YLA
Sbjct:  108 PFQLEPYRLVLIIVLVALLVALLTQPDFRWRPVAFGVPIAILLVTVAVSFVVNGMELANAGLVETAIGGMTQLLLMLSVFYAFRQLLRGERDVMLLVTFLTWAGVVVSFFAVIERVSRTNVFLMLGNVLPLTLLREGGDVSRAGVA-RAFGSAQHPIALAVALCLLIPLAVYLA 280          
BLAST of mRNA_P-wetherbeei_contig55150.1.1 vs. uniprot
Match: A0A0M2GXK4_9MICO (O-Antigen ligase n=1 Tax=Microbacterium ketosireducens TaxID=92835 RepID=A0A0M2GXK4_9MICO)

HSP 1 Score: 87.0 bits (214), Expect = 8.970e-17
Identity = 65/179 (36.31%), Postives = 97/179 (54.19%), Query Frame = 1
Query:    1 PFELEPYRLLVAVVIAGWLAALLVDERVTMKPTGLRGPIALLLLATLGSVAVNPANV--AGHQSNVLKSLTFLLSFILVLVLISSVVNSREAVDRIVKVLVGSGAIVAVFAIIESRTDWNAFNDLGKIIPILKLNEVPVIPGRGARLRV-----FASAQHSIALSAALVMLVPLAAYLA 516
            PF LEPYR+++ V++A  + ALL+D+R   +P     PI + + + + S+ +N A++  AG  S  + +L   L  +    ++  V+ SR  V+ +V  LV SG +VA+FA  E  T  N F  L   +P+       VI   GA  R      + S+QH IALS  L ML+PLA YLA
Sbjct:  103 PFALEPYRVMLLVLLAAIVGALLLDKRHRWQPVAFGWPIGIFIASLVISIPLNAADLVEAGLASTAVGALVNYLILLSSFYVVRQVLTSRRIVEGLVAGLVWSGVVVAMFATFERVTQVNVFWRLATFLPL------DVIADEGAAFRAGGYRSYGSSQHPIALSVMLCMLIPLAIYLA 275          
BLAST of mRNA_P-wetherbeei_contig55150.1.1 vs. uniprot
Match: A0A0Q9J9C8_9MICO (Uncharacterized protein n=1 Tax=Agromyces sp. Soil535 TaxID=1736390 RepID=A0A0Q9J9C8_9MICO)

HSP 1 Score: 85.9 bits (211), Expect = 2.260e-16
Identity = 61/174 (35.06%), Postives = 92/174 (52.87%), Query Frame = 1
Query:    1 PFELEPYRLLVAVVIAGWLAALLVDERVTMKPTGLRGPIALLLLATLGSVAVNPANVA--GHQSNVLKSLTFLLSFILVLVLISSVVNSREAVDRIVKVLVGSGAIVAVFAIIESRTDWNAFNDLGKIIPILKLNEVPVIPGRGARLRVFASAQHSIALSAALVMLVPLAAYLA 516
            PF+LEPYRL++A+VI   + AL++   V  +P     PI +LL+  L S  VN   +A  G     L  +  LL  + V      ++     V  ++  +  +G +V+ FA+IE  +  N F  LG ++P+  L E   +   G   R F SAQH IAL+ AL +L+PLA +LA
Sbjct:  101 PFQLEPYRLVLAIVIVALVVALILKPDVRWRPVAFGWPIGILLVTVLVSFVVNGMELANRGLTGTALGGIAQLLLMLSVFFCFRQLMRGERDVMLLLTFITWAGVVVSFFAVIERLSRVNVFLMLGDVLPLTLLREGGDVSRAGVA-RAFGSAQHPIALAVALCLLIPLAIHLA 273          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig55150.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A3D1U1K5_9CHLR4.480e-3848.85Uncharacterized protein n=1 Tax=Chloroflexi bacter... [more]
UPI001930A17B4.110e-3648.54O-antigen ligase family protein n=1 Tax=Solirubrob... [more]
A0A7V9T9Z5_9ACTN1.070e-3548.02O-antigen ligase family protein n=1 Tax=Actinomyce... [more]
UPI000421E59F7.400e-3140.56O-antigen ligase family protein n=1 Tax=Solirubrob... [more]
A0A535HPF7_9CHLR4.190e-2436.63Uncharacterized protein (Fragment) n=1 Tax=Chlorof... [more]
UPI0013C3F8077.390e-1837.57phage tail tape measure protein n=1 Tax=Gryllotalp... [more]
UPI001BE7CE8A1.410e-1735.06O-antigen ligase family protein n=1 Tax=Agromyces ... [more]
A0A4Q7MKA3_9MICO4.880e-1736.21O-antigen ligase-like membrane protein n=1 Tax=Agr... [more]
A0A0M2GXK4_9MICO8.970e-1736.31O-Antigen ligase n=1 Tax=Microbacterium ketosiredu... [more]
A0A0Q9J9C8_9MICO2.260e-1635.06Uncharacterized protein n=1 Tax=Agromyces sp. Soil... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig55150contigP-wetherbeei_contig55150:3..524 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog1380390.JIAT01000014_gene6301
Model size522
Max annot lvl84995|Rubrobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.41e-28
EggNOG OGsCOG3307@1|root,COG3307@2|Bacteria,2HRT0@201174|Actinobacteria,4CTWA@84995|Rubrobacteria
Description-O-antigen
Cds size522
COG categoryM
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186822.6678581-CDS-P-wetherbeei_contig55150:2..5241683186822.6678581-CDS-P-wetherbeei_contig55150:2..524Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig55150 3..524 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig55150.1.1prot_P-wetherbeei_contig55150.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig55150 3..524 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig55150.1.1

>prot_P-wetherbeei_contig55150.1.1 ID=prot_P-wetherbeei_contig55150.1.1|Name=mRNA_P-wetherbeei_contig55150.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=174bp
PFELEPYRLLVAVVIAGWLAALLVDERVTMKPTGLRGPIALLLLATLGSV
AVNPANVAGHQSNVLKSLTFLLSFILVLVLISSVVNSREAVDRIVKVLVG
SGAIVAVFAIIESRTDWNAFNDLGKIIPILKLNEVPVIPGRGARLRVFAS
AQHSIALSAALVMLVPLAAYLAVR
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mRNA from alignment at P-wetherbeei_contig55150:3..524+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig55150.1.1 ID=mRNA_P-wetherbeei_contig55150.1.1|Name=mRNA_P-wetherbeei_contig55150.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=522bp|location=Sequence derived from alignment at P-wetherbeei_contig55150:3..524+ (Phaeothamnion wetherbeei SAG_119_79)
CCCTTCGAGCTCGAGCCGTATCGGCTGCTCGTCGCGGTGGTCATCGCCGG CTGGCTCGCCGCGCTGCTGGTGGATGAGCGGGTCACCATGAAGCCGACCG GCCTCAGAGGCCCCATCGCGCTGCTGTTGCTCGCCACGCTCGGATCGGTG GCCGTGAACCCGGCCAACGTGGCCGGCCATCAGTCGAACGTCCTGAAGTC GCTGACGTTCCTGCTGAGCTTCATCCTGGTCCTCGTCTTGATCTCCAGCG TGGTCAACAGCCGAGAGGCCGTGGATCGGATCGTCAAGGTGCTGGTGGGG AGCGGGGCGATCGTCGCCGTCTTCGCCATCATCGAGTCGCGCACCGATTG GAACGCCTTCAACGACCTCGGCAAGATCATCCCGATCCTCAAGCTGAACG AGGTTCCGGTGATCCCGGGTCGGGGGGCTCGCCTTCGTGTGTTCGCGTCC GCTCAGCATTCGATCGCTCTCAGCGCCGCCCTGGTGATGCTGGTCCCCCT CGCCGCGTATCTCGCGGTGCGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig55150:3..524+

>mRNA_P-wetherbeei_contig55150.1.1 ID=mRNA_P-wetherbeei_contig55150.1.1|Name=mRNA_P-wetherbeei_contig55150.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=522bp|location=Sequence derived from alignment at P-wetherbeei_contig55150:3..524+ (Phaeothamnion wetherbeei SAG_119_79)
CCCTTCGAGCTCGAGCCGTATCGGCTGCTCGTCGCGGTGGTCATCGCCGG
CTGGCTCGCCGCGCTGCTGGTGGATGAGCGGGTCACCATGAAGCCGACCG
GCCTCAGAGGCCCCATCGCGCTGCTGTTGCTCGCCACGCTCGGATCGGTG
GCCGTGAACCCGGCCAACGTGGCCGGCCATCAGTCGAACGTCCTGAAGTC
GCTGACGTTCCTGCTGAGCTTCATCCTGGTCCTCGTCTTGATCTCCAGCG
TGGTCAACAGCCGAGAGGCCGTGGATCGGATCGTCAAGGTGCTGGTGGGG
AGCGGGGCGATCGTCGCCGTCTTCGCCATCATCGAGTCGCGCACCGATTG
GAACGCCTTCAACGACCTCGGCAAGATCATCCCGATCCTCAAGCTGAACG
AGGTTCCGGTGATCCCGGGTCGGGGGGCTCGCCTTCGTGTGTTCGCGTCC
GCTCAGCATTCGATCGCTCTCAGCGCCGCCCTGGTGATGCTGGTCCCCCT
CGCCGCGTATCTCGCGGTGCGC
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