mRNA_P-wetherbeei_contig55134.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig55134.1.1
Unique NamemRNA_P-wetherbeei_contig55134.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig55134.1.1 vs. uniprot
Match: A0A7X9Q1L4_9ACTN (TSPc domain-containing protein n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A7X9Q1L4_9ACTN)

HSP 1 Score: 197 bits (501), Expect = 5.810e-59
Identity = 106/177 (59.89%), Postives = 131/177 (74.01%), Query Frame = 1 
Query:    1 ALFGATVVSISGTPIAEAITAVTPWSPYDNAATIDLVVPMLLMTPEVLRAADVVDDLASPQFVLRLVDGSERTIDPAQLTWAEFIDQIDPTPIGMGQIESIPSMARVAEPFWTEVL------GSTMVMHYNAVTRSSGSTNISTVADEIDDALSNGSAERLVLDLRFNPGGDTDEYA 513
            AL GAT + I G P+A+A  AV P+SP+DN +TIDLVVP LL TPEVLRAA V+DD+A+P +V+RL DGSER IDP QL+W EF+  IDP PIGM +I SIP++ARV EPFWT VL      G  + + YN V R+SG  +I  +ADEID ALS G+  RLV+DLR+NPGG+  EYA
Sbjct:   97 ALVGATGLRIDGVPVADAAAAVAPYSPFDNESTIDLVVPTLLTTPEVLRAAGVIDDMAAPHYVVRLTDGSEREIDPDQLSWEEFV-AIDPKPIGMTKIASIPALARVDEPFWTTVLDAAPDGGEALYLQYNEVVRTSGPRSIEQLADEIDAALSGGNITRLVVDLRYNPGGNVREYA 272
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BLAST of mRNA_P-wetherbeei_contig55134.1.1 vs. uniprot
Match: A0A3C1LCG5_9ACTN (Uncharacterized protein (Fragment) n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A3C1LCG5_9ACTN)

HSP 1 Score: 70.5 bits (171), Expect = 6.110e-12
Identity = 37/69 (53.62%), Postives = 46/69 (66.67%), Query Frame = 1 
Query:  325 EPFWTEVL------GSTMVMHYNAVTRSSGSTNISTVADEIDDALSNGSAERLVLDLRFNPGGDTDEYA 513
            EPFWT VL      G  + + YN V R+SG  +I  +ADEID ALS G+  RLV+DLR+NPGG+  EYA
Sbjct:    2 EPFWTTVLDAGPDGGEALYLQYNEVVRTSGPRSIDQLADEIDAALSGGNITRLVVDLRYNPGGNVREYA 70
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BLAST of mRNA_P-wetherbeei_contig55134.1.1 vs. uniprot
Match: A0A0P6XNU5_9CHLR (Uncharacterized protein n=2 Tax=Ornatilinea apprima TaxID=1134406 RepID=A0A0P6XNU5_9CHLR)

HSP 1 Score: 58.9 bits (141), Expect = 4.460e-7
Identity = 47/166 (28.31%), Postives = 82/166 (49.40%), Query Frame = 1 
Query:   10 GATVVSISGTPIAEAITAVTPWSPYDNAATIDLVVPMLLMTPEVLRAADVVDDLASPQFVLRLVDGSERTIDPAQLTWAEFIDQIDPTPIGMGQIESIPSMARVAEPFWTEVLG--STMVMHYNAVTRSSGSTNISTVADEIDDALSNGSAERLVLDLRFNPGGDT 501
            GA +VS+  TP+ E +  + P+   +N  ++   +  LL+T +VL A  + +     +      DG+   +  A ++  E+ + ID    GM   E    +++  + +W E L   +T+   YN+    S    + T A+E+  AL     ERLV+DLRFN GG++
Sbjct:  150 GARLVSVEDTPLDEVVERLEPYISSENEMSLRSNIANLLLTADVLEALGLAESAQQVRLGFERADGTPFELSLAAVSAEEYREGIDN---GMSGQEKPLYLSKTDQVYWFEFLPDTNTLFFQYNSCV-DSPERPMQTFANELFAALDANPVERLVIDLRFNGGGNS 311
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig55134.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A7X9Q1L4_9ACTN5.810e-5959.89TSPc domain-containing protein n=1 Tax=Actinomycet... [more]
A0A3C1LCG5_9ACTN6.110e-1253.62Uncharacterized protein (Fragment) n=1 Tax=Acidimi... [more]
A0A0P6XNU5_9CHLR4.460e-728.31Uncharacterized protein n=2 Tax=Ornatilinea apprim... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig55134contigP-wetherbeei_contig55134:3..515 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size513
Hectar predicted targeting categorysignal peptide
Exons1
Cds size513
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186822.4420497-CDS-P-wetherbeei_contig55134:2..5151683186822.4420497-CDS-P-wetherbeei_contig55134:2..515Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig55134 3..515 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig55134.1.1prot_P-wetherbeei_contig55134.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig55134 3..515 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig55134.1.1

>prot_P-wetherbeei_contig55134.1.1 ID=prot_P-wetherbeei_contig55134.1.1|Name=mRNA_P-wetherbeei_contig55134.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=171bp
ALFGATVVSISGTPIAEAITAVTPWSPYDNAATIDLVVPMLLMTPEVLRA
ADVVDDLASPQFVLRLVDGSERTIDPAQLTWAEFIDQIDPTPIGMGQIES
IPSMARVAEPFWTEVLGSTMVMHYNAVTRSSGSTNISTVADEIDDALSNG
SAERLVLDLRFNPGGDTDEYA
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mRNA from alignment at P-wetherbeei_contig55134:3..515-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig55134.1.1 ID=mRNA_P-wetherbeei_contig55134.1.1|Name=mRNA_P-wetherbeei_contig55134.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=513bp|location=Sequence derived from alignment at P-wetherbeei_contig55134:3..515- (Phaeothamnion wetherbeei SAG_119_79)
GCGCTGTTCGGCGCGACGGTGGTCAGCATCTCCGGCACGCCGATCGCCGA
GGCGATCACTGCGGTGACGCCGTGGTCGCCGTACGACAACGCCGCCACGA
TCGACCTCGTCGTGCCCATGCTGCTGATGACGCCTGAGGTGCTCCGCGCC
GCCGATGTGGTGGACGATCTCGCATCGCCGCAGTTCGTGCTGCGCCTCGT
CGACGGCAGCGAACGAACCATCGACCCGGCACAGTTGACGTGGGCCGAGT
TCATCGACCAGATCGATCCGACGCCGATCGGCATGGGGCAGATCGAGTCG
ATCCCCTCGATGGCCCGTGTGGCCGAGCCTTTCTGGACCGAGGTGCTCGG
CAGCACGATGGTGATGCACTACAACGCGGTCACCCGCAGCAGCGGCTCGA
CGAACATCAGCACCGTCGCCGACGAGATCGACGATGCGCTCTCCAATGGC
TCGGCGGAGCGGCTCGTCCTCGACCTCCGCTTCAACCCCGGCGGTGACAC
CGACGAGTACGCG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig55134:3..515-

>mRNA_P-wetherbeei_contig55134.1.1 ID=mRNA_P-wetherbeei_contig55134.1.1|Name=mRNA_P-wetherbeei_contig55134.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=513bp|location=Sequence derived from alignment at P-wetherbeei_contig55134:3..515- (Phaeothamnion wetherbeei SAG_119_79)
GCGCTGTTCGGCGCGACGGTGGTCAGCATCTCCGGCACGCCGATCGCCGA
GGCGATCACTGCGGTGACGCCGTGGTCGCCGTACGACAACGCCGCCACGA
TCGACCTCGTCGTGCCCATGCTGCTGATGACGCCTGAGGTGCTCCGCGCC
GCCGATGTGGTGGACGATCTCGCATCGCCGCAGTTCGTGCTGCGCCTCGT
CGACGGCAGCGAACGAACCATCGACCCGGCACAGTTGACGTGGGCCGAGT
TCATCGACCAGATCGATCCGACGCCGATCGGCATGGGGCAGATCGAGTCG
ATCCCCTCGATGGCCCGTGTGGCCGAGCCTTTCTGGACCGAGGTGCTCGG
CAGCACGATGGTGATGCACTACAACGCGGTCACCCGCAGCAGCGGCTCGA
CGAACATCAGCACCGTCGCCGACGAGATCGACGATGCGCTCTCCAATGGC
TCGGCGGAGCGGCTCGTCCTCGACCTCCGCTTCAACCCCGGCGGTGACAC
CGACGAGTACGCG
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