mRNA_P-wetherbeei_contig5513.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig5513.2.1
Unique NamemRNA_P-wetherbeei_contig5513.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5513.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig5513contigP-wetherbeei_contig5513:1024..2571 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1548
Hectar predicted targeting categoryother localisation
Exons1
Cds size975
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186822.3294318-UTR-P-wetherbeei_contig5513:1023..14531683186822.3294318-UTR-P-wetherbeei_contig5513:1023..1453Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig5513 1024..1453 +
1683186822.3503609-UTR-P-wetherbeei_contig5513:2428..25711683186822.3503609-UTR-P-wetherbeei_contig5513:2428..2571Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig5513 2429..2571 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186822.3415878-CDS-P-wetherbeei_contig5513:1453..24281683186822.3415878-CDS-P-wetherbeei_contig5513:1453..2428Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5513 1454..2428 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig5513.2.1prot_P-wetherbeei_contig5513.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig5513 1454..2428 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig5513.2.1

>prot_P-wetherbeei_contig5513.2.1 ID=prot_P-wetherbeei_contig5513.2.1|Name=mRNA_P-wetherbeei_contig5513.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=325bp
MVAPPPAIDGHEYVMFSGPVGNVPSFASGGNVSSAAPATVPTAAAASTTA
AGRADAAMVRPAPVQPTTVISATATQVAAVMLLAPIALLHMALVMLPMRV
TSFATRDETATAAARGRCSRDGRSSRSASRNGSLSGSGSGNRSCGSLSGS
RSGSSLLRSDAPTDATGGPDVASATVAAAAAAGESSAAVAACLTEQTPEE
VAERILEDLHMLTNLHRVDVALPGFHTHGAIVVRRRNRHSAGYDVIKHVQ
RMIRRQDRPGDEQDEEEGDFSGESSEERSDGEAEAAAPAAAAAAAVDFQC
PSFAGTAGTAASVLGDISTTVVSA*
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mRNA from alignment at P-wetherbeei_contig5513:1024..2571+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig5513.2.1 ID=mRNA_P-wetherbeei_contig5513.2.1|Name=mRNA_P-wetherbeei_contig5513.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1548bp|location=Sequence derived from alignment at P-wetherbeei_contig5513:1024..2571+ (Phaeothamnion wetherbeei SAG_119_79)
GCGCTCAGCAACCTTTACGGCGGCCGTGCGCTGACGCAGATGATGCTCGC
GGACAACGATGGGGAGAGTGGGGTGCCCATCTTGCAGGTGAAATTAGGGA
GAAAATGCCTTGCTTGCGGGATGAAGTGTCTCAGACTTTCTTTAAACGTA
TTAGGTTTTGCCTGTGGCATTCATTAGTTTACGGGAAGCGAAAGCCAATG
TTTTTGAGGACTGTCTTTCTCTCTTGAGCTTTTCATGATTGAAGCTGACA
AGTTATCAGTCGCGTTCTCTCTCAAACTCTTGCTGCATCCAGGCAATATC
TGCCCCCGGCTCGCGGTATTACGCGGCGTTGGCGTCGTTTGAGCGGATTT
ACTTTTACGCGAACGCGCGCGCGGATCGAACGGTGCCCTACCACACGGCG
GCGGCGGCACGGGCCAATCCTTACGCGGGGATGGTGGCGCCGCCGCCGGC
CATTGATGGTCACGAATACGTTATGTTCTCCGGGCCGGTAGGGAACGTGC
CGTCCTTTGCTTCTGGAGGCAACGTTTCTTCGGCGGCGCCAGCGACGGTG
CCAACCGCAGCAGCAGCATCGACAACGGCGGCGGGTCGGGCGGACGCAGC
AATGGTTCGTCCAGCCCCGGTACAGCCTACGACAGTCATTTCTGCGACTG
CGACACAGGTGGCTGCGGTCATGCTGTTGGCCCCCATCGCACTTTTACAC
ATGGCCCTCGTAATGCTTCCCATGAGGGTCACATCGTTCGCGACGCGGGA
CGAAACCGCGACTGCAGCGGCACGGGGCCGATGCAGCCGGGACGGCAGGA
GTAGCCGAAGCGCGAGCCGCAACGGGAGCCTTAGCGGCAGCGGCAGTGGC
AACCGTAGCTGCGGCAGCCTCAGCGGCAGCCGCAGCGGCAGCAGCCTTTT
GCGGTCCGATGCGCCGACGGACGCCACTGGCGGGCCGGATGTGGCAAGTG
CGACAGTGGCGGCGGCAGCGGCGGCGGGAGAATCGAGTGCCGCGGTGGCT
GCATGCCTTACGGAACAGACGCCGGAAGAAGTGGCGGAGCGGATTCTGGA
GGACCTTCATATGCTGACAAATCTTCACCGCGTCGATGTGGCGCTCCCGG
GGTTCCACACCCACGGCGCCATCGTTGTGCGGCGGCGGAACCGCCACTCG
GCGGGCTACGATGTAATTAAACACGTCCAGCGCATGATCCGCCGACAAGA
CCGGCCCGGCGATGAACAGGACGAGGAGGAAGGGGACTTTAGCGGCGAGA
GCAGTGAGGAGCGCTCAGACGGAGAAGCGGAAGCGGCTGCGCCTGCGGCG
GCGGCGGCCGCGGCGGTGGACTTCCAATGTCCGTCGTTTGCGGGAACGGC
GGGGACGGCGGCGTCGGTGCTGGGAGACATTAGCACCACCGTGGTCTCTG
CCTGAGAAGTTTAATGAAGACTACAGTAGATGCGGTAGAAGGAATCTTTT
AATTTTAAATCAACATCCGCCACGCTTCCTGGACGAGCGAGGAGGGTATG
CATTTTCCGTCGCTGATATCACTGAACAATAAACGATAAACCGTTTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig5513:1024..2571+

>mRNA_P-wetherbeei_contig5513.2.1 ID=mRNA_P-wetherbeei_contig5513.2.1|Name=mRNA_P-wetherbeei_contig5513.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=975bp|location=Sequence derived from alignment at P-wetherbeei_contig5513:1024..2571+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGTGGCGCCGCCGCCGGCCATTGATGGTCACGAATACGTTATGTTCTC
CGGGCCGGTAGGGAACGTGCCGTCCTTTGCTTCTGGAGGCAACGTTTCTT
CGGCGGCGCCAGCGACGGTGCCAACCGCAGCAGCAGCATCGACAACGGCG
GCGGGTCGGGCGGACGCAGCAATGGTTCGTCCAGCCCCGGTACAGCCTAC
GACAGTCATTTCTGCGACTGCGACACAGGTGGCTGCGGTCATGCTGTTGG
CCCCCATCGCACTTTTACACATGGCCCTCGTAATGCTTCCCATGAGGGTC
ACATCGTTCGCGACGCGGGACGAAACCGCGACTGCAGCGGCACGGGGCCG
ATGCAGCCGGGACGGCAGGAGTAGCCGAAGCGCGAGCCGCAACGGGAGCC
TTAGCGGCAGCGGCAGTGGCAACCGTAGCTGCGGCAGCCTCAGCGGCAGC
CGCAGCGGCAGCAGCCTTTTGCGGTCCGATGCGCCGACGGACGCCACTGG
CGGGCCGGATGTGGCAAGTGCGACAGTGGCGGCGGCAGCGGCGGCGGGAG
AATCGAGTGCCGCGGTGGCTGCATGCCTTACGGAACAGACGCCGGAAGAA
GTGGCGGAGCGGATTCTGGAGGACCTTCATATGCTGACAAATCTTCACCG
CGTCGATGTGGCGCTCCCGGGGTTCCACACCCACGGCGCCATCGTTGTGC
GGCGGCGGAACCGCCACTCGGCGGGCTACGATGTAATTAAACACGTCCAG
CGCATGATCCGCCGACAAGACCGGCCCGGCGATGAACAGGACGAGGAGGA
AGGGGACTTTAGCGGCGAGAGCAGTGAGGAGCGCTCAGACGGAGAAGCGG
AAGCGGCTGCGCCTGCGGCGGCGGCGGCCGCGGCGGTGGACTTCCAATGT
CCGTCGTTTGCGGGAACGGCGGGGACGGCGGCGTCGGTGCTGGGAGACAT
TAGCACCACCGTGGTCTCTGCCTGA
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