mRNA_P-wetherbeei_contig5512.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig5512.1.1
Unique NamemRNA_P-wetherbeei_contig5512.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig5512.1.1 vs. uniprot
Match: A0A835YU63_9STRA (A_deaminase domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YU63_9STRA)

HSP 1 Score: 78.6 bits (192), Expect = 6.810e-12
Identity = 73/202 (36.14%), Postives = 92/202 (45.54%), Query Frame = 2 
Query:  959 LSSSGCGTGDDSHTSPSPQSH-LVPRFLLSIDRAGSPDAAAATAPLALGLRADPALGHLVTGIDFVGPPGPWRLCRRFAGADRCTAGRAGGHVPLRGAALRRCRRRRRHGRYSPLHAGPAGLLYMHFGXXXXXXXXXXXXXXXXXXGLCPTSNLKTLSLNGHHEHSLAPRWIREGYLFSINTDDVAVFATTLSAEFAAMAGA 1561
            LS+  C    D  T   P  H L+PR LLS+DR  S DAA     LA+ L  D      + GID  G P   R    FAG  +  A  AG  V +  A +      +    +SP   G A    +H                     +CPTSN+ TL LNGHHEH  A  W+   +  SINTDD  VF+T LS E+A++A A
Sbjct:  137 LSADTCRNSGDL-TGALPCEHGLIPRLLLSVDRGKSVDAAWEVVNLAVDLLKDAQYVKYLVGIDLSGNPAKGRF-EDFAGPLQ-HARAAGLKVSVHCAEVYNPPDTQAILDFSPDRLGHA----LHL----TSDALDRVLRNRVPVEVCPTSNVITLGLNGHHEHPTAATWLAHEHPVSINTDDAGVFSTCLSREYASVAAA 327
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5512.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A835YU63_9STRA6.810e-1236.14A_deaminase domain-containing protein n=1 Tax=Trib... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig5512contigP-wetherbeei_contig5512:2..1810 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7G826
Preferred nameADAL
PFAMsA_deaminase
Model size1809
Max annot lvl2759|Eukaryota
KEGG rclassRC00477
KEGG koko:K01488,ko:K12191
KEGG ReactionR01560,R02556
KEGG Pathwayko00230,ko01100,ko04144,ko04217,ko05340,map00230,map01100,map04144,map04217,map05340
KEGG ModuleM00412
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0004000,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006152,GO:0006154,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009058,GO:0009116,GO:0009119,GO:0009163,GO:0009164,GO:0009987,GO:0016787,GO:0016810,GO:0016814,GO:0017144,GO:0018130,GO:0019239,GO:0019438,GO:0019439,GO:0034404,GO:0034641,GO:0034654,GO:0034655,GO:0034656,GO:0042278,GO:0042451,GO:0042454,GO:0042455,GO:0042737,GO:0043094,GO:0043101,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044270,GO:0044271,GO:0044281,GO:0044282,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046085,GO:0046102,GO:0046103,GO:0046128,GO:0046129,GO:0046130,GO:0046483,GO:0046700,GO:0055086,GO:0071704,GO:0072521,GO:0072522,GO:0072523,GO:1901135,GO:1901136,GO:1901137,GO:1901360,GO:1901361,GO:1901362,GO:1901564,GO:1901565,GO:1901566,GO:1901575,GO:1901576,GO:1901657,GO:1901658,GO:1901659
Exons1
Evalue5.4e-10
EggNOG OGsCOG1816@1|root,KOG1097@2759|Eukaryota
EC3.5.4.4
Descriptionhypoxanthine salvage
Cds size330
COG categoryF
BRITEko00000,ko00001,ko00002,ko01000,ko04131,ko04147
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186822.1277175-UTR-P-wetherbeei_contig5512:1..1531683186822.1277175-UTR-P-wetherbeei_contig5512:1..153Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig5512 2..153 -
1683186822.1509676-UTR-P-wetherbeei_contig5512:483..18101683186822.1509676-UTR-P-wetherbeei_contig5512:483..1810Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig5512 484..1810 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186822.1403086-CDS-P-wetherbeei_contig5512:153..4831683186822.1403086-CDS-P-wetherbeei_contig5512:153..483Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5512 154..483 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig5512.1.1prot_P-wetherbeei_contig5512.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig5512 154..483 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig5512.1.1

>prot_P-wetherbeei_contig5512.1.1 ID=prot_P-wetherbeei_contig5512.1.1|Name=mRNA_P-wetherbeei_contig5512.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=110bp
MHFGGGGGAAAGAAGGVAAAGGGLCPTSNLKTLSLNGHHEHSLAPRWIRE
GYLFSINTDDVAVFATTLSAEFAAMAGAHGWVRRSWRRRHALRRGRFLKR
GCRCHYKEQ*
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mRNA from alignment at P-wetherbeei_contig5512:2..1810-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig5512.1.1 ID=mRNA_P-wetherbeei_contig5512.1.1|Name=mRNA_P-wetherbeei_contig5512.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1809bp|location=Sequence derived from alignment at P-wetherbeei_contig5512:2..1810- (Phaeothamnion wetherbeei SAG_119_79)
GTTTTTGACCTCACTCGATCTCGCCGTCGATTCCTTCGCTCGCGCCGTGC
CCAAAGTGGAGGTGCGGAGACGAGCCAAGGTTTTTGCACATACTTTTGCT
TTCCTCGAGACGAGACACAGGGTTCTGGAGGAAAGCGAAAACACCCTGAC
TCGACCAAACTTGCTCTCATGATAATTTCGTCACATGCTTTTCCAGCTAC
ACGCTCATTTGTATGGGAGCATTCGTCTTTCTACGCCGGAGGAGGTTCTG
CGCGGCCGAGCAACTGAGAATGGAAGCCCGTGGACGCCGCGTCGCTACAA
GTTTTGAGCACGGACGAGCGAACACTGGATGAGCGCTTCGACGCTTGTCG
CCTGATTCACGGATCAGTGGAACATTCCTTTCTTTTCCGAAGAAAAGTGT
CAACCCCTCCCCACTTGTTTGATAAAATCAGTTTTTGGTAGTCTTTGGTC
CGACGCATGCTTAGTCGCCTCTGCGTCTATTGTATGTCCGGCGCCACGCA
TGCGTTGGACGAAAGACTAAAGAGGCGGACCGTTTCATCATTTTGCAGCT
TGAACTCTATCCTTCGTTGTTTTCGAAAACATGGCATCCCCATGAGCAAT
GACGGTCTTTCTGTTGGCTCCTGGACGGCGGCGACAGCGCCGTCAATGAC
GTCTCCACACTCCGGCTTATTACAGTGGAGGTGTTCGAGGAATTGCTGAC
GACAATGTGTGCTACGCAGCACGCCGCGGCCGCTGGCGGACGGCACCGAC
TGCCGCGGCTACGCCTGCGCCGTCCTCGAAGCAATGCTCGGGTACGAGCA
GCAAACGGGTGGCGCCGCTGCTGTGCTGCGCTACTTGGCATGGCGAGAAT
CCATTGCAGCCAGAAGCTGGGATTGGCAGCAGCAGCAGCAGCAGCAGCAG
CAACGTCACCACCATCAGCAGCAGCAATGGTACGGACGGGAACAGTGGCG
GCGGTGGCTTAAGCAGCAGCGGCTGCGGAACGGGAGACGACAGCCACACC
TCGCCGTCGCCGCAGTCGCACTTGGTGCCGCGGTTCCTACTCAGCATTGA
CCGGGCGGGATCTCCGGACGCCGCCGCGGCAACGGCGCCGCTGGCTTTGG
GACTGCGTGCAGATCCGGCCCTCGGACACCTTGTCACCGGCATCGACTTT
GTCGGGCCACCCGGACCGTGGCGTCTCTGCCGACGCTTCGCCGGCGCTGA
CCGCTGCACGGCGGGGCGGGCTGGCGGTCACGTGCCACTGCGGGGAGCGG
CCCTGCGGCGGTGCCGACGCCGACGCAGGCACGGCCGCTATTCTCCACTT
CATGCCGGACCGGCTGGTCTACTTTATATGCATTTCGGAGGCGGCGGTGG
GGCGGCTGCTGGCGCTGCCGGCGGCGTGGCGGCCGCCGGTGGAGGTCTCT
GCCCGACCAGCAATTTGAAGACGCTGTCGTTGAACGGCCATCACGAGCAC
TCGCTGGCGCCCCGTTGGATCCGTGAGGGCTACCTGTTTTCCATCAACAC
TGACGACGTCGCCGTCTTCGCTACGACGCTGTCAGCGGAGTTTGCGGCGA
TGGCCGGTGCCCACGGCTGGGTCCGACGGAGCTGGCGGCGGCGGCATGCG
CTGCGGCGGGGCAGATTTTTGAAGAGGGGCTGCAGGTGCCATTACAAGGA
GCAATGAGGGTACGGTGCGACGCGCTCCTTCATGGGGCGGCGACGGCGAC
AGAGCACGATACCGCAGCAGGTGCATAGCGAGGAAGTCGCCCATGAAAAA
CAAGATTTTCGATTCAGCCCATGACTTGTCACCCCTGAGACAAAAAGGCA
GAAAAATCC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig5512:2..1810-

>mRNA_P-wetherbeei_contig5512.1.1 ID=mRNA_P-wetherbeei_contig5512.1.1|Name=mRNA_P-wetherbeei_contig5512.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=330bp|location=Sequence derived from alignment at P-wetherbeei_contig5512:2..1810- (Phaeothamnion wetherbeei SAG_119_79)
ATGCATTTCGGAGGCGGCGGTGGGGCGGCTGCTGGCGCTGCCGGCGGCGT
GGCGGCCGCCGGTGGAGGTCTCTGCCCGACCAGCAATTTGAAGACGCTGT
CGTTGAACGGCCATCACGAGCACTCGCTGGCGCCCCGTTGGATCCGTGAG
GGCTACCTGTTTTCCATCAACACTGACGACGTCGCCGTCTTCGCTACGAC
GCTGTCAGCGGAGTTTGCGGCGATGGCCGGTGCCCACGGCTGGGTCCGAC
GGAGCTGGCGGCGGCGGCATGCGCTGCGGCGGGGCAGATTTTTGAAGAGG
GGCTGCAGGTGCCATTACAAGGAGCAATGA
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