mRNA_P-wetherbeei_contig5509.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79
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Overview
Homology
BLAST of mRNA_P-wetherbeei_contig5509.1.1 vs. uniprot
Match: A0A835Z815_9STRA (BHLH domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z815_9STRA) HSP 1 Score: 135 bits (339), Expect = 1.100e-31 Identity = 121/242 (50.00%), Postives = 141/242 (58.26%), Query Frame = 3
Query: 807 DKRRLERNAREQKRSLKISQKIEELRKILRGSGVPAKSSKSSILHEATIYIRQLQRRQAQVEQEREQFLQLLQQETGRGGGSGAPATAPACGGFPPSISGASAVGGSSGVCPPGTAAPPMXXXXXXXXXXXXXXXXAFGSGAVXAATTAVNASSGPALVAAAMAGTTVVTSHDYQLVFHCAAVPMAIASVNGNIVDCNLRLTAVTGYPKDELLTLTIFNLVADQFLQQTFG*ALCTLFAGIL 1532
DKRRLERNAREQ+RSLKISQKI+ELR +LR SGV KSSKS+IL EAT I LQRRQA +E ER LQL+Q +SG+S+ A XXXXXXXXXXXXXXXX X AS G DYQL+FH AA+P+A+ SVNGNIVDCN R+ A TGY ++ELL LT+FNLVAD FLQQ+F L +G+L
Sbjct: 66 DKRRLERNAREQRRSLKISQKIDELRALLRQSGVMVKSSKSNILQEATQLICALQRRQALLEGERNHLLQLVQ-----------------------GLSGSSSA----------QAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXASVGM----------------DYQLIFHNAAIPLAVGSVNGNIVDCNARMCAFTGYRREELLALTVFNLVADAFLQQSFA-----LISGML 253
BLAST of mRNA_P-wetherbeei_contig5509.1.1 vs. uniprot
Match: A0A835YRU1_9STRA (BHLH domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRU1_9STRA) HSP 1 Score: 114 bits (286), Expect = 7.130e-25 Identity = 102/231 (44.16%), Postives = 128/231 (55.41%), Query Frame = 3
Query: 807 DKRRLERNAREQKRSLKISQKIEELRKILRGSGVPAKSSKSSILHEATIYIRQLQRRQAQVEQEREQFLQLLQQETGRGGGSGAPATAPACGGFPPSISGASAVGGSSGVCPPGTAAPPMXXXXXXXXXXXXXXXXAFGSGAVXAATTAVNASSGPALVAAAMAGTTVVTSHDYQLVFHCAAVPMAIASVNGNIVDCNLRLTAVTGYPKDELLTLTIFNLVADQFLQQTFG 1499
DKRRLERNAREQKRSLKISQ+I+ELR +LR SG+ K+SKS +L E T I+ L R+Q +E ER L L+Q SA G + G XXXXXXXXXXXXXXXX X + + DYQL+FH AA+P+A+ S+NGNIV+CN R+ TG+ +DELL LT+FNLVAD +LQ++F
Sbjct: 19 DKRRLERNAREQKRSLKISQRIDELRLLLRQSGISVKNSKSHVLQEGTNLIKLLLRQQGALEAERAHMLGLVQM--------------------------LSAGGNTQGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXASVGM--------------DYQLIFHNAAIPLAVCSINGNIVECNSRMCVATGFRRDELLLLTVFNLVADAYLQRSFA 209
BLAST of mRNA_P-wetherbeei_contig5509.1.1 vs. uniprot
Match: D8LJ51_ECTSI (N/a n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LJ51_ECTSI) HSP 1 Score: 108 bits (270), Expect = 5.310e-21 Identity = 107/312 (34.29%), Postives = 134/312 (42.95%), Query Frame = 3
Query: 783 ISAFPAEGDKRRLERNAREQKRSLKISQKIEELRKILRGSGVPAKSSKSSILHEATIYIRQLQRRQAQVEQEREQFLQLLQQETG--------------------------------------------RGGGSGAPATAPACGGFPPSISGASAVGGSSGVCPPGTAAPPMXXXXXXXXXXXXXXXX-AFGSGAVXAATTAVNASSGPALVAAA---------------------------MAGTTVVTSH-DYQLVFHCAAVPMAIASVNGNIVDCNLRLTAVTGYPKDELLTLTIFNLVADQFLQQTFG 1499
++ P +KRRLERNAREQKRSLKISQ+IE+LR++L GV K+SKS++L EAT YI LQR+ AQ E ER + LQLL RG G G P+ ++ G TAA M F S + A A P+ A A +A T SH +Y+ VF +PMAIA+VNGN+VDCN RLT VTG+ K+E L +TIF+LVAD FLQ TF
Sbjct: 261 MTKAPTVQNKRRLERNAREQKRSLKISQRIEDLRRMLSQFGVDVKASKSAVLSEATDYIAHLQRQHAQSEAERARILQLLHNSRAASPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHGGGDRGAGVGVVVERPSSNTMLDTLLSLDDDGDMGRPTSAMTAARAMVFPPPTPPQQGEEQIVPGFPSLSATARRGADGMPVAPSAAAGAAAXXXGRAXXXXXXXXXXXXXXXXXXNLAATARALSHVNYERVFRTLPMPMAIANVNGNLVDCNTRLTQVTGFRKEEALFMTIFDLVADPFLQHTFS 572
BLAST of mRNA_P-wetherbeei_contig5509.1.1 vs. uniprot
Match: A0A7S2CTA7_9STRA (Hypothetical protein n=2 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CTA7_9STRA) HSP 1 Score: 99.0 bits (245), Expect = 7.320e-18 Identity = 81/231 (35.06%), Postives = 110/231 (47.62%), Query Frame = 3
Query: 807 DKRRLERNAREQKRSLKISQKIEELRKILRGSGVPAKSSKSSILHEATIYIRQLQRRQAQVEQEREQFLQLLQQETGRGGGSGAPATAPACGGFPPSISGASAVGGSSGVCPPGTAAPPMXXXXXXXXXXXXXXXXAFGSGAVXAATTAVNASSGPALVAAAMAGTTVVTSHDYQLVFHCAAVPMAIASVNGNIVDCNLRLTAVTGYPKDELLTLTIFNLVADQFLQQTFG 1499
DKRRL+RNAREQ+RS KI+ +I++LR++LR +G P KS+KSS+L E YIR LQ+++ +E +G ++ G G P FGSG V A+ AV+ ++G +V+ H Y+L F +PMAIA+++G VD N R VT Y K ELL LTIFNL A LQ TF
Sbjct: 460 DKRRLDRNAREQRRSKKITSQIDQLRQVLRAAGRPVKSNKSSVLSETADYIRDLQKKRQALE-----------------------------------AAGNTSYPGMGAAADDGWGGQPRRMDQDTWASQPGG----FGSGNV--ASAAVSQATGR-----------LVSEHSYRLAFFDGCIPMAIATMDGCFVDGNKRFVEVTSYSKAELLKLTIFNLTAPHDLQDTFS 638
BLAST of mRNA_P-wetherbeei_contig5509.1.1 vs. uniprot
Match: A0A7S1UM68_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1UM68_9STRA) HSP 1 Score: 90.5 bits (223), Expect = 1.320e-15 Identity = 98/259 (37.84%), Postives = 137/259 (52.90%), Query Frame = 3
Query: 810 KRRLERNAREQKRSLKISQKIEELRKILRGSGVP-AKSSKSSILHEATIYIRQLQRRQAQVEQEREQFLQLLQQETGRGGGSGAPATA----------PACGGFP------------------PSISGASAVGGSSGVCPPGTAA-PPMXXXXXXXXXXXXXXXXAFGSGAVXAATTAVNASSGPALVAAAMAGTTVVTSHDYQLVFHCAAVPMAIASVNGNIVDCNLRLTAVTGYPKDELLTLTIFNLVADQFLQQTF 1496
+RR ERN RE++RS +I+Q+I EL+ +L SGV A+ +KSS+L EA YIR LQ++Q Q+E R QFL+ + + T G PATA P G P ++ + + +S V PP A M XXXXXXXXXXXX +G A TA+ ++ ++A++A V DY++VF PMAIA++ G +DCN TG+ K+EL ++TIFNL Q LQ F
Sbjct: 121 RRREERNQREKERSFRITQQINELKDLLVKSGVMVARGTKSSVLSEAASYIRMLQQQQQQIELHRRQFLRDVNRSTA----FGFPATAAVPQMATSSQPQPSGIPGLTLVPLAANVPQQQAAAQQLANLATIATASSVRPPQQAVLSEMPSTAXXXXXXXXXXXXXXAAGGQIAPPTALANAARDLAISASLAHQREVDHDDYKVVFESCNSPMAIANLGGTFLDCNKLFRQTTGHSKEELASMTIFNLTHRQDLQIAF 375
BLAST of mRNA_P-wetherbeei_contig5509.1.1 vs. uniprot
Match: A0A1Z5K560_FISSO (BHLH domain-containing protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5K560_FISSO) HSP 1 Score: 86.7 bits (213), Expect = 2.720e-14 Identity = 81/229 (35.37%), Postives = 114/229 (49.78%), Query Frame = 3
Query: 813 RRLERNAREQKRSLKISQKIEELRKILRGSGVPA-KSSKSSILHEATIYIRQLQRRQAQVEQEREQFLQLLQQETGRGGGSGAPATAPACGGFPPSISGASAVGGSSGVCPPGTAAPPMXXXXXXXXXXXXXXXXAFGSGAVXAATTAVNASSGPALVAAAMAGTTVVTSHDYQLVFHCAAVPMAIASVNGNIVDCNLRLTAVTGYPKDELLTLTIFNLVADQFLQQTF 1496
+R ERNARE++RS +I++KI ELR +L GV K +KSS+L EA YIR LQ+ Q + E +R+Q +Q +Q GGG+ P A A + +G ++G GV P T P + + +ASSG + DY+ F+ + MAIAS+ G +DCN T +T Y K +L +LTIFNL A Q LQ+ F
Sbjct: 180 KRKERNAREKERSFRIAKKINELRDLLSTGGVIVPKGTKSSVLTEAASYIRTLQQHQYRAEIDRQQLIQQMQMI---GGGAHGPQAAAAIRQLA-AQNGVWSLGNFGGVPPKPTMYP--------------------------SEPKSSDASSG-------FLQANQLEPLDYRFFFNSCGIGMAIASMGGAFIDCNQLFTQLTEYTKQDLSSLTIFNLTARQDLQKAF 371
BLAST of mRNA_P-wetherbeei_contig5509.1.1 vs. uniprot
Match: A0A7S3KX76_9STRA (Hypothetical protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3KX76_9STRA) HSP 1 Score: 84.0 bits (206), Expect = 2.500e-13 Identity = 76/231 (32.90%), Postives = 111/231 (48.05%), Query Frame = 3
Query: 807 DKRRLERNAREQKRSLKISQKIEELRKILRGSGVPA-KSSKSSILHEATIYIRQLQRRQAQVEQEREQFLQLLQQETGRGGGSGAPATAPACGGFPPSISGASAVGGSSGVCPPGTAAPPMXXXXXXXXXXXXXXXXAFGSGAVXAATTAVNASSGPALVAAAMAGTTVVTSHDYQLVFHCAAVPMAIASVNGNIVDCNLRLTAVTGYPKDELLTLTIFNLVADQFLQQTF 1496
+++R+ERNARE++RS +IS++I ELR +L GV K +KSS+L EA YIR LQ+ Q + E +R Q +Q +Q GGG+ A A + +G ++G G+ P P S+ A V ++DY+ +F+ V MAIAS+ G +DCN ++ Y K E+ +LTIFNL A Q LQ F
Sbjct: 233 ERKRVERNAREKERSFRISKQINELRGLLSSGGVIVPKGTKSSVLTEAANYIRMLQQHQYRSEIDRHQLIQQMQLI---GGGAHGAQAAQAIR-HVAAQNGVWSLGNFGGIPPKSALLTPN-----------------------------TEKSNNTVTEDAVATDPNKVNTNDYRFIFNSCGVGMAIASMGGAFIDCNQLFCQLSNYTKQEVCSLTIFNLTARQDLQHAF 430
BLAST of mRNA_P-wetherbeei_contig5509.1.1 vs. uniprot
Match: A0A7S1ZZC9_9STRA (Hypothetical protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1ZZC9_9STRA) HSP 1 Score: 82.0 bits (201), Expect = 1.440e-12 Identity = 84/235 (35.74%), Postives = 117/235 (49.79%), Query Frame = 3
Query: 807 DKRRLERNAREQKRSLKISQKIEELRKILRGSGVPA-KSSKSSILHEATIYIRQLQRRQAQVEQEREQFLQLLQQETGRGGGSGAPATAPACGGFPPSISGASAVG--GSSGVCPPGTAAPPMXXXXXXXXXXXXXXXXAFGS-GAVXA-ATTAVNASSGPALVAAAMAGTTVVTSHDYQLVFHCAAVPMAIASVNGNIVDCNLRLTAVTGYPKDELLTLTIFNLVADQFLQQTF 1496
D +R ERNARE++RS +IS++I ELR +L GV K +KSS+L EA YIR LQ+ Q + E +R Q +Q +QQ G A P G ++ + V G+ G PP +A AFG+ GA A A + P LV T + +Y+ VF+ AV MAIAS+ G +DCN ++ Y K E+ ++TIFNL + LQ F
Sbjct: 395 DNKREERNAREKERSFRISRQIGELRSLLSSGGVIVPKGTKSSVLTEAANYIRMLQQHQYRSEIDRHQLVQQIQQ-------IGTGAIGPQAAGAIRHVAAQNGVWQLGNFGGVPPRSAM-------------TYYQQGAFGAPGANGADANQPQQMTQEPPLV-------TKIDELEYRFVFNSCAVGMAIASMGGAFIDCNNMFCQLSQYNKQEVCSMTIFNLTSRVDLQHAF 602
BLAST of mRNA_P-wetherbeei_contig5509.1.1 vs. uniprot
Match: A0A1E7F364_9STRA (BHLH domain-containing protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7F364_9STRA) HSP 1 Score: 79.7 bits (195), Expect = 1.850e-12 Identity = 79/236 (33.47%), Postives = 116/236 (49.15%), Query Frame = 3
Query: 807 DKRRLERNAREQKRSLKISQKIEELRKILRGSGVPA-KSSKSSILHEATIYIRQLQRRQAQVEQEREQFLQLLQQETGRGGGSGAPATAPACGGFPPSISGASAVGGSSGVCPPGT--AAPPMXXXXXXXXXXXXXXXXAFGSGAVXAATTAVNASSGPALVAAAMAGTTV---VTSHDYQLVFHCAAVPMAIASVNGNIVDCNLRLTAVTGYPKDELLTLTIFNLVADQFLQQTF 1496
+ +R ERNARE++RS +IS++I ELR +L GV K +KSS+L EA YIR LQ+ Q + E +R Q +Q +Q+ GSGA A S V +GV G PP SG + T+ S A+++ G+T+ + DY+ VF+ + MAIAS+ G +DCN ++ Y K E+ ++T+FNL + Q LQ F
Sbjct: 30 ESKREERNAREKERSFRISRQINELRNLLSSGGVIVPKGTKSSVLTEAANYIRMLQQHQYRSEIDRHQLVQQVQRI-----GSGALGQEAA--------SAVRHVAAQNGVWSLGNFGGVPPKSAMMYHQP-----------SGPIADEPTSSADS------ASSLNGSTLPSKIEESDYRQVFNSCTIGMAIASMGGAFIDCNKLFCNISNYTKQEICSMTVFNLTSRQDLQSAF 235
BLAST of mRNA_P-wetherbeei_contig5509.1.1 vs. uniprot
Match: A0A7S1UNB1_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1UNB1_9STRA) HSP 1 Score: 81.3 bits (199), Expect = 1.890e-12 Identity = 78/231 (33.77%), Postives = 115/231 (49.78%), Query Frame = 3
Query: 807 DKRRLERNAREQKRSLKISQKIEELRKILRGSGVPA-KSSKSSILHEATIYIRQLQRRQAQVEQEREQFLQLLQQETGRGGGSGAPATAPACGGFPPSISGASAVGGSSGVCPPGTAAPPMXXXXXXXXXXXXXXXXAFGSGAVXAATTAVNASSGPALVAAAMAGTTVVTSHDYQLVFHCAAVPMAIASVNGNIVDCNLRLTAVTGYPKDELLTLTIFNLVADQFLQQTF 1496
+ +R ERNARE++RS +IS++I ELR +L GV K +KSS+L EA YIR LQ+ Q + E +R+Q +Q +Q GGG+ P A + +G ++G GV PP +A + A AAT P T + +Y+ +F+ +V MA+AS+ G +DCN ++ Y K E+ +LTIFNL + Q LQ F
Sbjct: 225 ESKREERNAREKERSFRISKQINELRNLLSSGGVIVPKGTKSSVLTEAANYIRMLQQHQYRSEIDRQQLVQQIQMI---GGGALGPQAAQTIR-HVAAQNGVWSLGNFGGV-PPKSAM------------------QFYPDAAAPAATETTPPPGAPDAPLQ-----TKIDDPEYRFIFNSCSVGMAVASMGGAFIDCNELFCQLSNYTKQEVCSLTIFNLTSRQDLQPAF 427 The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5509.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-wetherbeei_contig5509.1.1 >prot_P-wetherbeei_contig5509.1.1 ID=prot_P-wetherbeei_contig5509.1.1|Name=mRNA_P-wetherbeei_contig5509.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=365bp MDDGGATVAMPFSRGEASEWLDFESLELEREFGGGMQANEEEDDDDDMEDback to top mRNA from alignment at P-wetherbeei_contig5509:1575..3557+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-wetherbeei_contig5509.1.1 ID=mRNA_P-wetherbeei_contig5509.1.1|Name=mRNA_P-wetherbeei_contig5509.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1983bp|location=Sequence derived from alignment at P-wetherbeei_contig5509:1575..3557+ (Phaeothamnion wetherbeei SAG_119_79)back to top Coding sequence (CDS) from alignment at P-wetherbeei_contig5509:1575..3557+ >mRNA_P-wetherbeei_contig5509.1.1 ID=mRNA_P-wetherbeei_contig5509.1.1|Name=mRNA_P-wetherbeei_contig5509.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1095bp|location=Sequence derived from alignment at P-wetherbeei_contig5509:1575..3557+ (Phaeothamnion wetherbeei SAG_119_79)back to top |