mRNA_P-wetherbeei_contig55087.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79
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Overview
Homology
BLAST of mRNA_P-wetherbeei_contig55087.1.1 vs. uniprot
Match: UPI001CE32360 (hypothetical protein n=1 Tax=Bradyrhizobium sp. WSM 1738 TaxID=2821405 RepID=UPI001CE32360) HSP 1 Score: 56.6 bits (135), Expect = 4.540e-9 Identity = 29/45 (64.44%), Postives = 34/45 (75.56%), Query Frame = 1
Query: 25 REMAKSYSGVIVREGGRSSIPETLMIEPRGRGVLDHPPSRVTTVE 159
RE A ++S VIVREGGR SIPE +MI+P RGVLD P +R TVE
Sbjct: 14 RENADAHSPVIVREGGRFSIPEAIMIKPMSRGVLDPPHARGMTVE 58
BLAST of mRNA_P-wetherbeei_contig55087.1.1 vs. uniprot
Match: UPI001AEC852B (hypothetical protein n=1 Tax=Bradyrhizobium sp. AT1 TaxID=574934 RepID=UPI001AEC852B) HSP 1 Score: 55.8 bits (133), Expect = 4.950e-9 Identity = 32/53 (60.38%), Postives = 35/53 (66.04%), Query Frame = 1
Query: 7 NSGAMCREMAK----SYSGVIVREGGRSSIPETLMIEPRGRGVLDHPPSRVTT 153
NSG RE AK VI REGGRSSIPET++IEP RGVLD PP+R T
Sbjct: 6 NSGESSREKAKVRVHHTLTVIAREGGRSSIPETIVIEPISRGVLDSPPARGMT 58
BLAST of mRNA_P-wetherbeei_contig55087.1.1 vs. uniprot
Match: A0A2S6MKY7_9BRAD (Uncharacterized protein n=1 Tax=Bradyrhizobium sp. AC87j1 TaxID=2055894 RepID=A0A2S6MKY7_9BRAD) HSP 1 Score: 57.4 bits (137), Expect = 1.380e-8 Identity = 28/35 (80.00%), Postives = 29/35 (82.86%), Query Frame = -1
Query: 49 CH-PRRRVIQYAAASRLYHQRLWDTGSSAFADDDT 150
CH PRRR IQYAAASR H LW+TGSSAFADDDT
Sbjct: 12 CHAPRRRGIQYAAASRFNHYALWNTGSSAFADDDT 46
BLAST of mRNA_P-wetherbeei_contig55087.1.1 vs. uniprot
Match: A0A1I3J1W1_9BRAD (Uncharacterized protein n=1 Tax=Bradyrhizobium sp. cf659 TaxID=1761771 RepID=A0A1I3J1W1_9BRAD) HSP 1 Score: 55.1 bits (131), Expect = 1.750e-7 Identity = 30/50 (60.00%), Postives = 34/50 (68.00%), Query Frame = 1
Query: 10 SGAMCREMAKSYS-GVIVREGGRSSIPETLMIEPRGRGVLDHPPSRVTTV 156
S A R Y+ VI REGGRSSIPE +++EPRG GVLD PPSR TV
Sbjct: 176 SAARLRRRVCDYTLAVIAREGGRSSIPEAVVMEPRGCGVLDSPPSRGMTV 225
BLAST of mRNA_P-wetherbeei_contig55087.1.1 vs. uniprot
Match: A0A2M8QYD1_9BRAD (Uncharacterized protein n=1 Tax=Bradyrhizobium forestalis TaxID=1419263 RepID=A0A2M8QYD1_9BRAD) HSP 1 Score: 51.6 bits (122), Expect = 2.680e-7 Identity = 24/37 (64.86%), Postives = 28/37 (75.68%), Query Frame = -1
Query: 49 LNCCHPRRRVIQYAAASRLYHQRLWDTGSSAFADDDT 159
L C PR+R +QYAAASRL H LW+TGS AFA DD+
Sbjct: 9 LRCHSPRKRGMQYAAASRLNHNCLWNTGSPAFAGDDS 45
BLAST of mRNA_P-wetherbeei_contig55087.1.1 vs. uniprot
Match: A0A7S7QU09_9BRAD (Uncharacterized protein n=1 Tax=Bradyrhizobium sp. CCBAU 51753 TaxID=1325100 RepID=A0A7S7QU09_9BRAD) HSP 1 Score: 51.6 bits (122), Expect = 4.980e-7 Identity = 26/38 (68.42%), Postives = 26/38 (68.42%), Query Frame = -2
Query: 21 G*SSTPRPLGSIINVSGILDRPPSRTMTPEYDFAISRH 134
G SSTPRPLGSI VSGILD PPSR MTP I H
Sbjct: 31 GRSSTPRPLGSITAVSGILDHPPSRVMTPRLLIVIEDH 68
BLAST of mRNA_P-wetherbeei_contig55087.1.1 vs. uniprot
Match: J2W714_9BRAD (Uncharacterized protein n=1 Tax=Bradyrhizobium sp. YR681 TaxID=1144344 RepID=J2W714_9BRAD) HSP 1 Score: 49.7 bits (117), Expect = 1.500e-6 Identity = 23/47 (48.94%), Postives = 31/47 (65.96%), Query Frame = -1
Query: 4 PRRRVIQYAAASRLYHQRLWDTGSSAFADDDT*I*LCHLAAHCARVV 144
P + IQYAAA RL H RLW+TGS AFA DD + C++ ++ R +
Sbjct: 5 PAKAGIQYAAAFRLNHSRLWNTGSPAFAGDDQRVWDCYILSNACRSI 51
BLAST of mRNA_P-wetherbeei_contig55087.1.1 vs. uniprot
Match: A0A7S7TLI9_9BRAD (Uncharacterized protein n=1 Tax=Bradyrhizobium sp. CCBAU 51753 TaxID=1325100 RepID=A0A7S7TLI9_9BRAD) HSP 1 Score: 48.9 bits (115), Expect = 1.970e-6 Identity = 22/29 (75.86%), Postives = 24/29 (82.76%), Query Frame = -2
Query: 48 G*SSTPRPLGSIINVSGILDRPPSRTMTP 134
G SSTPRPLGS+ VSGILD PP+R MTP
Sbjct: 27 GRSSTPRPLGSVTTVSGILDHPPARVMTP 55
BLAST of mRNA_P-wetherbeei_contig55087.1.1 vs. uniprot
Match: UPI001E549531 (hypothetical protein n=1 Tax=Bradyrhizobium ivorense TaxID=2511166 RepID=UPI001E549531) HSP 1 Score: 50.4 bits (119), Expect = 2.310e-6 Identity = 22/29 (75.86%), Postives = 25/29 (86.21%), Query Frame = -1
Query: 49 RVIQYAAASRLYHQRLWDTGSSAFADDDT 135
R IQYAAASR Y++RLW+TGS AFA DDT
Sbjct: 28 RAIQYAAASRFYYRRLWNTGSPAFAGDDT 56
BLAST of mRNA_P-wetherbeei_contig55087.1.1 vs. uniprot
Match: A0A1M5J585_9BRAD (Uncharacterized protein n=1 Tax=Bradyrhizobium erythrophlei TaxID=1437360 RepID=A0A1M5J585_9BRAD) HSP 1 Score: 51.2 bits (121), Expect = 2.600e-6 Identity = 27/37 (72.97%), Postives = 28/37 (75.68%), Query Frame = -2
Query: 45 TVVTREGG*SSTPRPLGSIINVSGILDRPPSRTMTPE 155
TV+ R G SSTPR LGSI NVSGILDRPPSR T E
Sbjct: 16 TVIPRACGVSSTPRRLGSIKNVSGILDRPPSRATTIE 52 The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig55087.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 20
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-wetherbeei_contig55087.1.1 >prot_P-wetherbeei_contig55087.1.1 ID=prot_P-wetherbeei_contig55087.1.1|Name=mRNA_P-wetherbeei_contig55087.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=54bp MDNSGAMCREMAKSYSGVIVREGGRSSIPETLMIEPRGRGVLDHPPSRVTback to top mRNA from alignment at P-wetherbeei_contig55087:16..177- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-wetherbeei_contig55087.1.1 ID=mRNA_P-wetherbeei_contig55087.1.1|Name=mRNA_P-wetherbeei_contig55087.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=162bp|location=Sequence derived from alignment at P-wetherbeei_contig55087:16..177- (Phaeothamnion wetherbeei SAG_119_79)back to top Coding sequence (CDS) from alignment at P-wetherbeei_contig55087:16..177- >mRNA_P-wetherbeei_contig55087.1.1 ID=mRNA_P-wetherbeei_contig55087.1.1|Name=mRNA_P-wetherbeei_contig55087.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=162bp|location=Sequence derived from alignment at P-wetherbeei_contig55087:16..177- (Phaeothamnion wetherbeei SAG_119_79)back to top |