mRNA_P-wetherbeei_contig55047.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig55047.1.1
Unique NamemRNA_P-wetherbeei_contig55047.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig55047.1.1 vs. uniprot
Match: A0A6I3EW74_9ACTN (ATP-binding cassette domain-containing protein n=2 Tax=root TaxID=1 RepID=A0A6I3EW74_9ACTN)

HSP 1 Score: 244 bits (623), Expect = 4.440e-75
Identity = 122/166 (73.49%), Postives = 144/166 (86.75%), Query Frame = 1 
Query:    1 AYLDVREKVGQNLSALQEGISGVRVIQAYHRQEEQTRRFYKSNRTLYAANLHTVRISTWYFGLVEFVGVFSIALIVGVGGWMVHADAVSVGTVIAFVLWLANLFDPVQQLSQLYNTVQSAAAALHKLYQLIDNVPDVAEHPHPVDLPATGDLVAHHVTFAYEGSER 498
            AYLDVRE+VGQNLS LQE  +GVRVIQAY R+EEQ RRF++SNR LY ++LH+V++STWYFG+VE+ G+ SIA++VGVGGW+VH  +V+ GTV AFVL LANLFDPVQQLSQLYNTVQSAAAALHKLY LID VPDVAEHP  V+LPA G L AHH+TF Y+G+ER
Sbjct:  202 AYLDVRERVGQNLSNLQESFTGVRVIQAYAREEEQERRFHESNRALYRSHLHSVKVSTWYFGVVEWSGIVSIAIVVGVGGWLVHRGSVAFGTVAAFVLLLANLFDPVQQLSQLYNTVQSAAAALHKLYGLIDTVPDVAEHPKAVELPARGVLAAHHITFTYDGTER 367
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BLAST of mRNA_P-wetherbeei_contig55047.1.1 vs. uniprot
Match: A0A7K1B7A2_9ACTN (ATP-binding cassette domain-containing protein n=2 Tax=root TaxID=1 RepID=A0A7K1B7A2_9ACTN)

HSP 1 Score: 244 bits (622), Expect = 5.850e-75
Identity = 122/166 (73.49%), Postives = 144/166 (86.75%), Query Frame = 1 
Query:    1 AYLDVREKVGQNLSALQEGISGVRVIQAYHRQEEQTRRFYKSNRTLYAANLHTVRISTWYFGLVEFVGVFSIALIVGVGGWMVHADAVSVGTVIAFVLWLANLFDPVQQLSQLYNTVQSAAAALHKLYQLIDNVPDVAEHPHPVDLPATGDLVAHHVTFAYEGSER 498
            AYLDVREKVGQNLS+LQEGI+GVRVIQAY RQ+EQ RRF+ +NR LY ++LH+VR+S WYFGLVE+VGVF+IA+++GVGGW+ H  ++ VGTV AFVL LANLF+PVQQLSQLYNTVQSAAA+LHKLY LID  PDV EHPHPV LPA G L AH +TF Y+G+ER
Sbjct:  205 AYLDVREKVGQNLSSLQEGIAGVRVIQAYDRQDEQIRRFHGTNRALYRSHLHSVRVSVWYFGLVEWVGVFAIAVVIGVGGWLSHNGSIEVGTVAAFVLLLANLFEPVQQLSQLYNTVQSAAASLHKLYGLIDAEPDVGEHPHPVTLPARGALEAHDLTFRYDGAER 370
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BLAST of mRNA_P-wetherbeei_contig55047.1.1 vs. uniprot
Match: A0A7X9KMB3_9ACTN (ABC transporter ATP-binding protein (Fragment) n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A7X9KMB3_9ACTN)

HSP 1 Score: 237 bits (604), Expect = 1.740e-72
Identity = 123/166 (74.10%), Postives = 139/166 (83.73%), Query Frame = 1 
Query:    1 AYLDVREKVGQNLSALQEGISGVRVIQAYHRQEEQTRRFYKSNRTLYAANLHTVRISTWYFGLVEFVGVFSIALIVGVGGWMVHADAVSVGTVIAFVLWLANLFDPVQQLSQLYNTVQSAAAALHKLYQLIDNVPDVAEHPHPVDLPATGDLVAHHVTFAYEGSER 498
            AYLDVRE+VG NLS LQEGI+GVRVIQAY R+ E  RRF +SNR LY ++L +V+ISTWYFGLVE+ G+ SIALIVG+GG +VH  +V  GTV AFVL  ANLFDPVQQLSQLYNTVQSAAA+LHKLY L+D VPDVAEHP PV LPA G L AHH+TFAYEGSER
Sbjct:  202 AYLDVRERVGSNLSNLQEGITGVRVIQAYGREAETQRRFVQSNRALYGSHLRSVKISTWYFGLVEWAGIVSIALIVGIGGMLVHRGSVGFGTVAAFVLLTANLFDPVQQLSQLYNTVQSAAASLHKLYTLMDTVPDVAEHPKPVRLPAAGVLEAHHITFAYEGSER 367
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BLAST of mRNA_P-wetherbeei_contig55047.1.1 vs. uniprot
Match: A0A6L6DZB2_9ACTN (ATP-binding cassette domain-containing protein n=7 Tax=root TaxID=1 RepID=A0A6L6DZB2_9ACTN)

HSP 1 Score: 230 bits (586), Expect = 1.300e-69
Identity = 113/166 (68.07%), Postives = 142/166 (85.54%), Query Frame = 1 
Query:    1 AYLDVREKVGQNLSALQEGISGVRVIQAYHRQEEQTRRFYKSNRTLYAANLHTVRISTWYFGLVEFVGVFSIALIVGVGGWMVHADAVSVGTVIAFVLWLANLFDPVQQLSQLYNTVQSAAAALHKLYQLIDNVPDVAEHPHPVDLPATGDLVAHHVTFAYEGSER 498
            AYL+VREKVG NLSALQEGI+GVRVIQAY R++EQ RRF +SNR L+ +++H+V++STWYFGL+EF G+ S ALI+G+GGW+VH  +VS+GTV+AFVL LANLFDPVQQLSQLYNT+QSAAAALHKL+ ++D VPDV E  HP  LPA GD+V + +TF+Y G+ R
Sbjct:  209 AYLEVREKVGANLSALQEGITGVRVIQAYAREDEQIRRFEESNRALFRSHMHSVKVSTWYFGLIEFAGIASSALIIGIGGWLVHRGSVSLGTVVAFVLLLANLFDPVQQLSQLYNTLQSAAAALHKLFGILDAVPDVDEVAHPTSLPARGDVVVNDITFSYAGAAR 374
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BLAST of mRNA_P-wetherbeei_contig55047.1.1 vs. uniprot
Match: A0A4P5S834_9ACTN (Uncharacterized protein n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A4P5S834_9ACTN)

HSP 1 Score: 223 bits (569), Expect = 3.600e-67
Identity = 112/166 (67.47%), Postives = 137/166 (82.53%), Query Frame = 1 
Query:    1 AYLDVREKVGQNLSALQEGISGVRVIQAYHRQEEQTRRFYKSNRTLYAANLHTVRISTWYFGLVEFVGVFSIALIVGVGGWMVHADAVSVGTVIAFVLWLANLFDPVQQLSQLYNTVQSAAAALHKLYQLIDNVPDVAEHPHPVDLPATGDLVAHHVTFAYEGSER 498
            AYL++REKVG NLSALQEGI+GVRVIQAY R+ EQ RRF +SN+ L+ +++H+VR++TWYFGLVEF G+ + AL+VG+GGW+VH   VS+GTV+AFVL LANLFDPVQQLSQLYNT+QSA AALHKL+ +ID VPDV E P P++LP  GDLV   VTF YE   R
Sbjct:  201 AYLEIREKVGSNLSALQEGITGVRVIQAYAREGEQIRRFEESNQDLFRSHMHSVRVTTWYFGLVEFSGIAASALMVGIGGWLVHRQDVSLGTVVAFVLLLANLFDPVQQLSQLYNTLQSATAALHKLFTIIDAVPDVGEAPAPIELPRDGDLVVDSVTFTYEAGTR 366
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BLAST of mRNA_P-wetherbeei_contig55047.1.1 vs. uniprot
Match: A0A7K1CRT1_9ACTN (ATP-binding cassette domain-containing protein n=2 Tax=root TaxID=1 RepID=A0A7K1CRT1_9ACTN)

HSP 1 Score: 223 bits (569), Expect = 3.670e-67
Identity = 109/166 (65.66%), Postives = 141/166 (84.94%), Query Frame = 1 
Query:    1 AYLDVREKVGQNLSALQEGISGVRVIQAYHRQEEQTRRFYKSNRTLYAANLHTVRISTWYFGLVEFVGVFSIALIVGVGGWMVHADAVSVGTVIAFVLWLANLFDPVQQLSQLYNTVQSAAAALHKLYQLIDNVPDVAEHPHPVDLPATGDLVAHHVTFAYEGSER 498
            AYL+VREKVG NLSALQEGI+GVRVIQAY R++EQ RRF +SNR L+ ++LH+++++TWYFG++EF G+ S ALI+G+GGW+VH  +VS+GTV+AFVL LA+LFDPVQQLSQLYNT+QSAAAALHKL+ ++D  PDVAE  +P+ LP +GD+V   VTF Y G+ R
Sbjct:  202 AYLEVREKVGANLSALQEGIAGVRVIQAYAREDEQIRRFEESNRALFRSHLHSIKVTTWYFGVIEFAGIASSALIIGIGGWLVHRGSVSLGTVVAFVLLLASLFDPVQQLSQLYNTLQSAAAALHKLFGILDAQPDVAESDNPITLPVSGDVVVDAVTFTYAGAHR 367
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BLAST of mRNA_P-wetherbeei_contig55047.1.1 vs. uniprot
Match: A0A6J6VM43_9ZZZZ (Unannotated protein n=4 Tax=root TaxID=1 RepID=A0A6J6VM43_9ZZZZ)

HSP 1 Score: 220 bits (561), Expect = 4.340e-67
Identity = 109/164 (66.46%), Postives = 141/164 (85.98%), Query Frame = 1 
Query:    1 AYLDVREKVGQNLSALQEGISGVRVIQAYHRQEEQTRRFYKSNRTLYAANLHTVRISTWYFGLVEFVGVFSIALIVGVGGWMVHADAVSVGTVIAFVLWLANLFDPVQQLSQLYNTVQSAAAALHKLYQLIDNVPDVAEHPHPVDLPATGDLVAHHVTFAYEGS 492
            AYL+VR+KVG NLSALQEGI+GVRVIQAY R++EQ RRF +SNR LY +++H+V++STWYFGL+EF G+ S ALIVG GG +VH  +VS+GTV+AFVL LA+LFDPVQQLSQLYNT+QS+AA+LHKL+ +ID VPDV E P+P+ LP+ GD+V  ++TF+Y G+
Sbjct:   85 AYLEVRDKVGANLSALQEGITGVRVIQAYAREDEQIRRFEESNRALYRSHIHSVKVSTWYFGLIEFAGIGSSALIVGFGGLLVHNGSVSLGTVVAFVLLLASLFDPVQQLSQLYNTLQSSAASLHKLFAIIDAVPDVDESPNPISLPSVGDVVVDNITFSYAGA 248
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BLAST of mRNA_P-wetherbeei_contig55047.1.1 vs. uniprot
Match: A0A2G4GFN0_9ACTN (ABC transporter n=2 Tax=Acidimicrobium sp. TaxID=1872112 RepID=A0A2G4GFN0_9ACTN)

HSP 1 Score: 222 bits (565), Expect = 1.840e-66
Identity = 111/164 (67.68%), Postives = 140/164 (85.37%), Query Frame = 1 
Query:    1 AYLDVREKVGQNLSALQEGISGVRVIQAYHRQEEQTRRFYKSNRTLYAANLHTVRISTWYFGLVEFVGVFSIALIVGVGGWMVHADAVSVGTVIAFVLWLANLFDPVQQLSQLYNTVQSAAAALHKLYQLIDNVPDVAEHPHPVDLPATGDLVAHHVTFAYEGS 492
            AYL+VR+KVG NLSALQEGI+GVRVIQAY R++EQ RRF +SNR LY +++H+V++STWYFGL+EF G+ S ALIVGVGG +VH   VS+GTV+AFVL LA+LFDPVQQLSQLYNT+QS+AAALHKL+ +ID VPDV E P+P+ LP  GD+V  ++TF+Y G+
Sbjct:  215 AYLEVRDKVGANLSALQEGITGVRVIQAYAREDEQIRRFEESNRALYRSHIHSVKVSTWYFGLIEFAGIGSSALIVGVGGLLVHNGTVSLGTVVAFVLLLASLFDPVQQLSQLYNTLQSSAAALHKLFGIIDAVPDVDESPNPISLPPAGDVVVDNITFSYAGA 378
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BLAST of mRNA_P-wetherbeei_contig55047.1.1 vs. uniprot
Match: A0A6L6CWN9_9ACTN (ATP-binding cassette domain-containing protein n=6 Tax=root TaxID=1 RepID=A0A6L6CWN9_9ACTN)

HSP 1 Score: 222 bits (565), Expect = 1.950e-66
Identity = 112/166 (67.47%), Postives = 141/166 (84.94%), Query Frame = 1 
Query:    1 AYLDVREKVGQNLSALQEGISGVRVIQAYHRQEEQTRRFYKSNRTLYAANLHTVRISTWYFGLVEFVGVFSIALIVGVGGWMVHADAVSVGTVIAFVLWLANLFDPVQQLSQLYNTVQSAAAALHKLYQLIDNVPDVAEHPHPVDLPATGDLVAHHVTFAYEGSER 498
            AYL+VREKVG NLSALQEGI+GVRVIQAY R++EQ RRF +SNR L+ ++L++V++STWYFGL+EF G+ S ALIVG+GG++VH  +VS+GTV+AFVL LA LFDPVQQLSQLYNT+QSAAA+LHKL+ +ID  PDV E  HP  LP+TG+LV  ++TFAY GS +
Sbjct:  218 AYLEVREKVGANLSALQEGITGVRVIQAYAREDEQIRRFKESNRELFRSHLYSVKVSTWYFGLIEFAGIASSALIVGLGGFLVHRGSVSLGTVVAFVLLLATLFDPVQQLSQLYNTLQSAAASLHKLFAIIDAEPDVEESTHPTPLPSTGNLVVENITFAYAGSAK 383
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BLAST of mRNA_P-wetherbeei_contig55047.1.1 vs. uniprot
Match: A0A094RST0_9ACTN (ABC transmembrane type-1 domain-containing protein (Fragment) n=1 Tax=actinobacterium acAcidi TaxID=1504320 RepID=A0A094RST0_9ACTN)

HSP 1 Score: 210 bits (534), Expect = 2.750e-64
Identity = 108/166 (65.06%), Postives = 131/166 (78.92%), Query Frame = 1 
Query:    1 AYLDVREKVGQNLSALQEGISGVRVIQAYHRQEEQTRRFYKSNRTLYAANLHTVRISTWYFGLVEFVGVFSIALIVGVGGWMVHADAVSVGTVIAFVLWLANLFDPVQQLSQLYNTVQSAAAALHKLYQLIDNVPDVAEHPHPVDLPATGDLVAHHVTFAYEGSER 498
            AYLDVREKVG NLS LQEGI+GVRVIQAY ++  ++ RF +SNR L+ +++++V+ISTWYFGLVEF G+ +   I+G GGW+VH  +VS+GTV AFVL LANLFDPVQQLSQLYNTVQS+ AALHKL  +ID VPDVAE   P  LP  G +V  +VTF Y GSER
Sbjct:  201 AYLDVREKVGNNLSTLQEGITGVRVIQAYGQEANRSERFRQSNRALFDSHMYSVKISTWYFGLVEFAGIAATGAIIGFGGWLVHRGSVSIGTVTAFVLLLANLFDPVQQLSQLYNTVQSSTAALHKLIGIIDAVPDVAEVDEPTQLPERGVIVVDNVTFGYAGSER 366
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig55047.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6I3EW74_9ACTN4.440e-7573.49ATP-binding cassette domain-containing protein n=2... [more]
A0A7K1B7A2_9ACTN5.850e-7573.49ATP-binding cassette domain-containing protein n=2... [more]
A0A7X9KMB3_9ACTN1.740e-7274.10ABC transporter ATP-binding protein (Fragment) n=1... [more]
A0A6L6DZB2_9ACTN1.300e-6968.07ATP-binding cassette domain-containing protein n=7... [more]
A0A4P5S834_9ACTN3.600e-6767.47Uncharacterized protein n=1 Tax=Actinomycetia bact... [more]
A0A7K1CRT1_9ACTN3.670e-6765.66ATP-binding cassette domain-containing protein n=2... [more]
A0A6J6VM43_9ZZZZ4.340e-6766.46Unannotated protein n=4 Tax=root TaxID=1 RepID=A0A... [more]
A0A2G4GFN0_9ACTN1.840e-6667.68ABC transporter n=2 Tax=Acidimicrobium sp. TaxID=1... [more]
A0A6L6CWN9_9ACTN1.950e-6667.47ATP-binding cassette domain-containing protein n=6... [more]
A0A094RST0_9ACTN2.750e-6465.06ABC transmembrane type-1 domain-containing protein... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig55047contigP-wetherbeei_contig55047:6..503 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog1313172.YM304_29200
PFAMsABC_membrane,ABC_tran
Model size498
Max annot lvl84992|Acidimicrobiia
KEGG koko:K06147
KEGG TC3.A.1.106,3.A.1.109,3.A.1.21
Hectar predicted targeting categoryother localisation
Exons1
Evalue3.01e-57
EggNOG OGsCOG1132@1|root,COG1132@2|Bacteria,2GITR@201174|Actinobacteria,4CNI7@84992|Acidimicrobiia
DescriptionABC transporter transmembrane region
Cds size498
COG categoryV
BRITEko00000,ko02000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186821.1518826-CDS-P-wetherbeei_contig55047:5..5031683186821.1518826-CDS-P-wetherbeei_contig55047:5..503Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig55047 6..503 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig55047.1.1prot_P-wetherbeei_contig55047.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig55047 6..503 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig55047.1.1

>prot_P-wetherbeei_contig55047.1.1 ID=prot_P-wetherbeei_contig55047.1.1|Name=mRNA_P-wetherbeei_contig55047.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=166bp
AYLDVREKVGQNLSALQEGISGVRVIQAYHRQEEQTRRFYKSNRTLYAAN
LHTVRISTWYFGLVEFVGVFSIALIVGVGGWMVHADAVSVGTVIAFVLWL
ANLFDPVQQLSQLYNTVQSAAAALHKLYQLIDNVPDVAEHPHPVDLPATG
DLVAHHVTFAYEGSER
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mRNA from alignment at P-wetherbeei_contig55047:6..503+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig55047.1.1 ID=mRNA_P-wetherbeei_contig55047.1.1|Name=mRNA_P-wetherbeei_contig55047.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=498bp|location=Sequence derived from alignment at P-wetherbeei_contig55047:6..503+ (Phaeothamnion wetherbeei SAG_119_79)
GCCTACCTCGACGTGCGCGAGAAGGTCGGGCAGAACCTGTCCGCGCTGCA
GGAGGGCATCTCCGGCGTGCGAGTCATCCAGGCGTACCACCGTCAGGAGG
AGCAGACCCGCCGCTTCTACAAGTCCAACCGAACGCTCTACGCGGCGAAC
CTGCACACCGTGCGGATCAGCACGTGGTACTTCGGTCTCGTCGAGTTCGT
CGGCGTCTTCTCGATCGCGCTGATCGTCGGTGTCGGTGGGTGGATGGTGC
ACGCCGACGCGGTGTCGGTCGGCACAGTGATCGCGTTCGTGCTGTGGTTG
GCCAACCTGTTCGACCCGGTGCAGCAGCTGTCGCAGCTGTACAACACGGT
GCAGAGCGCCGCGGCAGCGCTGCACAAGCTGTACCAGCTGATCGACAACG
TGCCCGACGTCGCCGAGCACCCGCACCCGGTCGACCTGCCGGCCACCGGC
GACCTCGTGGCCCACCACGTCACCTTCGCCTACGAAGGCTCCGAGCGT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig55047:6..503+

>mRNA_P-wetherbeei_contig55047.1.1 ID=mRNA_P-wetherbeei_contig55047.1.1|Name=mRNA_P-wetherbeei_contig55047.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=498bp|location=Sequence derived from alignment at P-wetherbeei_contig55047:6..503+ (Phaeothamnion wetherbeei SAG_119_79)
GCCTACCTCGACGTGCGCGAGAAGGTCGGGCAGAACCTGTCCGCGCTGCA
GGAGGGCATCTCCGGCGTGCGAGTCATCCAGGCGTACCACCGTCAGGAGG
AGCAGACCCGCCGCTTCTACAAGTCCAACCGAACGCTCTACGCGGCGAAC
CTGCACACCGTGCGGATCAGCACGTGGTACTTCGGTCTCGTCGAGTTCGT
CGGCGTCTTCTCGATCGCGCTGATCGTCGGTGTCGGTGGGTGGATGGTGC
ACGCCGACGCGGTGTCGGTCGGCACAGTGATCGCGTTCGTGCTGTGGTTG
GCCAACCTGTTCGACCCGGTGCAGCAGCTGTCGCAGCTGTACAACACGGT
GCAGAGCGCCGCGGCAGCGCTGCACAAGCTGTACCAGCTGATCGACAACG
TGCCCGACGTCGCCGAGCACCCGCACCCGGTCGACCTGCCGGCCACCGGC
GACCTCGTGGCCCACCACGTCACCTTCGCCTACGAAGGCTCCGAGCGT
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