mRNA_P-wetherbeei_contig55026.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79
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Overview
Homology
BLAST of mRNA_P-wetherbeei_contig55026.1.1 vs. uniprot
Match: A0A844T7K4_9BRAD (Uncharacterized protein n=3 Tax=Bradyrhizobium TaxID=374 RepID=A0A844T7K4_9BRAD) HSP 1 Score: 85.5 bits (210), Expect = 3.720e-16 Identity = 102/143 (71.33%), Postives = 104/143 (72.73%), Query Frame = 1
Query: 1 FSTTVNAGGEQNVYIDGSATGTTINTGGLQIDWGFXXXXXXXXXXXXXXXXXXXXXXXXXVQTVEAGGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYGTVVQTTIAXXXXXXXXXXXXXXXXXXXXXXXVYADGFATGT 429
F TT+NAGGEQNVYIDGSATGTTIN GGLQIDWGF XXXXXXXXXXXXXX VQTVE GGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYGTV+QTTI VYADG ATGT
Sbjct: 879 FWTTLNAGGEQNVYIDGSATGTTINAGGLQIDWGFTIITTISGGNXXXXXXXXXXXXXXGVQTVETGGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYGTVIQTTIGNGAVQYLHGSASVTTVNAGSQQNVYADGVATGT 1021
BLAST of mRNA_P-wetherbeei_contig55026.1.1 vs. uniprot
Match: A0A4R3TZ63_9BRAD (Autotransporter passenger strand-loop-strand repeat protein n=1 Tax=Bradyrhizobium sp. Y-H1 TaxID=2485167 RepID=A0A4R3TZ63_9BRAD) HSP 1 Score: 74.7 bits (182), Expect = 2.060e-12 Identity = 102/142 (71.83%), Postives = 107/142 (75.35%), Query Frame = 1
Query: 1 FSTTVNAGGEQNVYIDGSATGTTINTGGLQIDWGFXXXXXXXXXXXXXXXXXXXXXXXXXVQTVEAGGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYGTVVQTTIAXXXXXXXXXXXXXXXXXXXXXXXVYADGFATG 426
FST VN GGEQNVYIDGSATGTTIN GGLQIDWGF XXXXXXXXXXXXXXXXXXXXXXXVQT+++GGT XXXXXXXXXXXXXXXXXXXXXXXXXXXX G+ +QT I VYADGFATG
Sbjct: 955 FSTFVNDGGEQNVYIDGSATGTTINAGGLQIDWGFTIXXXXXXXXXXXXXXXXXXXXXXXVQTIQSGGTASDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGSAIQTIIDNGAIQYLHGTASFTTVNAGSQQNVYADGFATG 1096
BLAST of mRNA_P-wetherbeei_contig55026.1.1 vs. uniprot
Match: A0A5P6PAH1_9BRAD (Uncharacterized protein n=2 Tax=Bradyrhizobium TaxID=374 RepID=A0A5P6PAH1_9BRAD) HSP 1 Score: 69.3 bits (168), Expect = 1.510e-10 Identity = 103/132 (78.03%), Postives = 104/132 (78.79%), Query Frame = 1
Query: 34 NVYIDGSATGTTINTGGLQIDWGFXXXXXXXXXXXXXXXXXXXXXXXXXVQTVEAGGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYGTVVQTTIAXXXXXXXXXXXXXXXXXXXXXXXVYADGFATGT 429
NVYIDGSATGT+IN GGLQIDWGF X VQTVEAGGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYGTVVQTTIA XXXXXXXXXXXXXXXXXXXXXX ADGFATGT
Sbjct: 890 NVYIDGSATGTSINAGGLQIDWGFTIITTINGXNQHVFGSASLTTINSGVQTVEAGGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYGTVVQTTIANXXXXXXXXXXXXXXXXXXXXXXXXADGFATGT 1021
BLAST of mRNA_P-wetherbeei_contig55026.1.1 vs. uniprot
Match: UPI00076A980E (calcium-binding protein n=1 Tax=Bradyrhizobium sp. CCH5-F6 TaxID=1768753 RepID=UPI00076A980E) HSP 1 Score: 56.2 bits (134), Expect = 4.990e-6 Identity = 92/128 (71.88%), Postives = 95/128 (74.22%), Query Frame = 1
Query: 34 NVYIDGSATGTTINTGGLQIDWGFXXXXXXXXXXXXXXXXXXXXXXXXXVQTVEAGGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYGTVVQTTIAXXXXXXXXXXXXXXXXXXXXXXXVYADGF 417
NVYIDGSATGTTIN GGLQIDWGF XXXXXXXXXXXXXXXXXXXXXXXVQTV++GGT XXXXXXXXXXXXXXXXXXXXXXXXXXXX G+V QT I VYADGF
Sbjct: 1068 NVYIDGSATGTTINAGGLQIDWGFTIXXXXXXXXXXXXXXXXXXXXXXXVQTVQSGGTASEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGSVTQTIIGNGAIQYLHGSASLTTVNAGSQQNVYADGF 1195
BLAST of mRNA_P-wetherbeei_contig55026.1.1 vs. uniprot
Match: A0A850IG07_9BRAD (Uncharacterized protein n=1 Tax=Bradyrhizobium sp. 323S2 TaxID=1404649 RepID=A0A850IG07_9BRAD) HSP 1 Score: 55.8 bits (133), Expect = 5.920e-6 Identity = 62/131 (47.33%), Postives = 67/131 (51.15%), Query Frame = 1
Query: 37 VYIDGSATGTTINTGGLQIDWGFXXXXXXXXXXXXXXXXXXXXXXXXXVQTVEAGGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYGTVVQTTIAXXXXXXXXXXXXXXXXXXXXXXXVYADGFATGT 429
VYIDGSATG+TIN GG+QIDWGF XXXXXXXXXXXXXXX+Q VE+GGT GTVVQTTI+ XXXX VYADG ATGT
Sbjct: 262 VYIDGSATGSTINAGGIQIDWGFTIITTISGGGXXXXXXXXXXXXXXXLQAVESGGTASDTTIHG------------------------GTVVQTTISNGALQSLHGNASIXXXXAGSQQSVYADGTATGT 368
BLAST of mRNA_P-wetherbeei_contig55026.1.1 vs. uniprot
Match: A0A176YEY8_9BRAD (Uncharacterized protein n=1 Tax=Bradyrhizobium centrolobii TaxID=1505087 RepID=A0A176YEY8_9BRAD) HSP 1 Score: 55.8 bits (133), Expect = 6.690e-6 Identity = 25/32 (78.12%), Postives = 28/32 (87.50%), Query Frame = 1
Query: 7 TTVNAGGEQNVYIDGSATGTTINTGGLQIDWG 102
T VN GGEQNVY DG+ATGTT+N GG+QIDWG
Sbjct: 881 TIVNDGGEQNVYADGAATGTTLNAGGMQIDWG 912
BLAST of mRNA_P-wetherbeei_contig55026.1.1 vs. uniprot
Match: A0A1L3F844_BRAJP (Uncharacterized protein n=14 Tax=Bradyrhizobiaceae TaxID=41294 RepID=A0A1L3F844_BRAJP) HSP 1 Score: 55.1 bits (131), Expect = 1.230e-5 Identity = 24/32 (75.00%), Postives = 29/32 (90.62%), Query Frame = 1
Query: 7 TTVNAGGEQNVYIDGSATGTTINTGGLQIDWG 102
TTVNAG +Q+VY DG+ATGTTIN GG+Q+DWG
Sbjct: 1003 TTVNAGSQQSVYADGTATGTTINAGGVQVDWG 1034 The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig55026.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 7
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-wetherbeei_contig55026.1.1 >prot_P-wetherbeei_contig55026.1.1 ID=prot_P-wetherbeei_contig55026.1.1|Name=mRNA_P-wetherbeei_contig55026.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=175bp FSTTVNAGGEQNVYIDGSATGTTINTGGLQIDWGFTITTTINGGNQHVFGback to top mRNA from alignment at P-wetherbeei_contig55026:2..526+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-wetherbeei_contig55026.1.1 ID=mRNA_P-wetherbeei_contig55026.1.1|Name=mRNA_P-wetherbeei_contig55026.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=525bp|location=Sequence derived from alignment at P-wetherbeei_contig55026:2..526+ (Phaeothamnion wetherbeei SAG_119_79)back to top Coding sequence (CDS) from alignment at P-wetherbeei_contig55026:2..526+ >mRNA_P-wetherbeei_contig55026.1.1 ID=mRNA_P-wetherbeei_contig55026.1.1|Name=mRNA_P-wetherbeei_contig55026.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=525bp|location=Sequence derived from alignment at P-wetherbeei_contig55026:2..526+ (Phaeothamnion wetherbeei SAG_119_79)back to top |