mRNA_P-wetherbeei_contig55024.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig55024.1.1
Unique NamemRNA_P-wetherbeei_contig55024.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
[Close]
BLAST of mRNA_P-wetherbeei_contig55024.1.1 vs. uniprot
Match: A0A4Q8QHX6_9BRAD (Flagellar M-ring protein FliF (Fragment) n=1 Tax=Bradyrhizobium sp. Leo170 TaxID=1571199 RepID=A0A4Q8QHX6_9BRAD)

HSP 1 Score: 223 bits (568), Expect = 2.160e-72
Identity = 113/152 (74.34%), Postives = 135/152 (88.82%), Query Frame = 1 
Query:   10 VQGLADFVKTLGAARIGAMAAVTVALIGFFAFMILRLSSPAMTPLFTELSTEDSGAILKELDRQAVIYEIRNEGAVIMVPRDRVMRLRMKFAEGGLPKGGGVGYEIFDKSDSLGTTSFLQNINKMRALEGELSRTIRAIDRVQAARVHLVSP 465
            +Q L  F+K LGAAR+ AM AVT ALIGFFAF+ILR+++P +T LFT+LS EDS AI+KEL+RQA+ +E+RNEG VIMVP+D+V RLRMK AEGG+PKGGGVGYEIFDKSD+LGTTSF+QNIN +RALEGEL+RTIRAIDR+QAARVHLV P
Sbjct:    1 MQSLVAFLKGLGAARLAAMVAVTAALIGFFAFVILRVTTPQLTTLFTDLSVEDSSAIVKELERQAIPFELRNEGTVIMVPKDKVTRLRMKLAEGGMPKGGGVGYEIFDKSDALGTTSFVQNINHLRALEGELARTIRAIDRIQAARVHLVLP 152
[Close]
BLAST of mRNA_P-wetherbeei_contig55024.1.1 vs. uniprot
Match: UPI0017FBE68C (Flagellar M-ring protein FliF n=1 Tax=Bradyrhizobium sp. TaxID=376 RepID=UPI0017FBE68C)

HSP 1 Score: 229 bits (584), Expect = 1.720e-71
Identity = 113/152 (74.34%), Postives = 138/152 (90.79%), Query Frame = 1 
Query:   10 VQGLADFVKTLGAARIGAMAAVTVALIGFFAFMILRLSSPAMTPLFTELSTEDSGAILKELDRQAVIYEIRNEGAVIMVPRDRVMRLRMKFAEGGLPKGGGVGYEIFDKSDSLGTTSFLQNINKMRALEGELSRTIRAIDRVQAARVHLVSP 465
            +QGLADF+K++GAAR GAM AVT ALIGFFAF+I+R+++P MT LFT+LS EDS  I+K+L+RQ + +EIRNEG++IMVP+D+V RLRMK AEGGLPKGGGVGYE+FDKSD+LGTTSF+QNIN +RALEGEL+RTIRAIDR+QAARVHLV P
Sbjct:    1 MQGLADFLKSIGAARFGAMIAVTAALIGFFAFVIMRVTTPQMTTLFTDLSVEDSSGIIKDLERQGIQFEIRNEGSIIMVPKDKVTRLRMKLAEGGLPKGGGVGYEVFDKSDALGTTSFVQNINHLRALEGELARTIRAIDRIQAARVHLVLP 152
[Close]
BLAST of mRNA_P-wetherbeei_contig55024.1.1 vs. uniprot
Match: UPI00184F8E45 (Flagellar M-ring protein FliF n=1 Tax=Rhodoplanes sp. TaxID=1968906 RepID=UPI00184F8E45)

HSP 1 Score: 232 bits (592), Expect = 3.060e-71
Identity = 118/152 (77.63%), Postives = 138/152 (90.79%), Query Frame = 1 
Query:   10 VQGLADFVKTLGAARIGAMAAVTVALIGFFAFMILRLSSPAMTPLFTELSTEDSGAILKELDRQAVIYEIRNEGAVIMVPRDRVMRLRMKFAEGGLPKGGGVGYEIFDKSDSLGTTSFLQNINKMRALEGELSRTIRAIDRVQAARVHLVSP 465
            +QGL  FVKTLG ARI AM AVT ALIGFFAF+ILR+++P MTPLFT+LS EDS AI+K+L+RQ++ +E++NEGAVI+VPRDRV RLRMK AEGGLPKGGG+GYEIFDKSD+LGTTSF+QNIN +RALEGEL+RTIRAIDRVQAARVHLV P
Sbjct:    1 MQGLITFVKTLGPARIAAMGAVTAALIGFFAFVILRVTAPVMTPLFTDLSLEDSSAIIKDLERQSIPFEMKNEGAVILVPRDRVSRLRMKLAEGGLPKGGGIGYEIFDKSDALGTTSFVQNINHLRALEGELARTIRAIDRVQAARVHLVLP 152
[Close]
BLAST of mRNA_P-wetherbeei_contig55024.1.1 vs. uniprot
Match: A0A537SAE6_9PROT (Flagellar M-ring protein FliF (Fragment) n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A537SAE6_9PROT)

HSP 1 Score: 218 bits (554), Expect = 4.640e-70
Identity = 111/152 (73.03%), Postives = 132/152 (86.84%), Query Frame = 1 
Query:   10 VQGLADFVKTLGAARIGAMAAVTVALIGFFAFMILRLSSPAMTPLFTELSTEDSGAILKELDRQAVIYEIRNEGAVIMVPRDRVMRLRMKFAEGGLPKGGGVGYEIFDKSDSLGTTSFLQNINKMRALEGELSRTIRAIDRVQAARVHLVSP 465
            +QGL  F+K LGA+R+ AM AVT AL  FF F+ILR+++P MT LFTELS EDS AI+K+L+RQA+ YE+RN+GA IMVP+D+V RLRMK AEGGLPKGGGVGYEIFDKSD+LGTTSF+QNIN +RALEGEL+RTI AIDR+QAARVHLV P
Sbjct:    1 MQGLVGFLKDLGASRLLAMIAVTTALTSFFGFVILRVTTPQMTTLFTELSIEDSSAIIKDLERQAIPYELRNDGAAIMVPKDKVTRLRMKLAEGGLPKGGGVGYEIFDKSDALGTTSFVQNINHLRALEGELARTIHAIDRIQAARVHLVLP 152
[Close]
BLAST of mRNA_P-wetherbeei_contig55024.1.1 vs. uniprot
Match: A0A1H2AW42_9BRAD (Flagellar M-ring protein n=2 Tax=Bradyrhizobium canariense TaxID=255045 RepID=A0A1H2AW42_9BRAD)

HSP 1 Score: 229 bits (584), Expect = 5.920e-70
Identity = 116/155 (74.84%), Postives = 139/155 (89.68%), Query Frame = 1 
Query:    1 GPLVQGLADFVKTLGAARIGAMAAVTVALIGFFAFMILRLSSPAMTPLFTELSTEDSGAILKELDRQAVIYEIRNEGAVIMVPRDRVMRLRMKFAEGGLPKGGGVGYEIFDKSDSLGTTSFLQNINKMRALEGELSRTIRAIDRVQAARVHLVSP 465
            G  +Q L DF+K LGA+R+ AM AVT ALIGFFAF+I+R+++P MT L+T+LSTEDS AI+K+L+RQA+ YE+RN+GAVIMVP+D+V RLRMK AEGGLPKGGGVGYEIFDKSD+LGTTSF+QNIN +RALEGELSRTIRAIDR+QAARVHLV P
Sbjct:   12 GSCLQSLVDFLKGLGASRLMAMVAVTAALIGFFAFVIMRVTTPQMTTLYTDLSTEDSSAIMKDLERQAIPYELRNDGAVIMVPKDKVTRLRMKLAEGGLPKGGGVGYEIFDKSDALGTTSFVQNINHLRALEGELSRTIRAIDRIQAARVHLVLP 166
[Close]
BLAST of mRNA_P-wetherbeei_contig55024.1.1 vs. uniprot
Match: A0A7S8A9A7_9BRAD (Flagellar M-ring protein n=9 Tax=Bradyrhizobium TaxID=374 RepID=A0A7S8A9A7_9BRAD)

HSP 1 Score: 228 bits (582), Expect = 8.220e-70
Identity = 113/152 (74.34%), Postives = 137/152 (90.13%), Query Frame = 1 
Query:   10 VQGLADFVKTLGAARIGAMAAVTVALIGFFAFMILRLSSPAMTPLFTELSTEDSGAILKELDRQAVIYEIRNEGAVIMVPRDRVMRLRMKFAEGGLPKGGGVGYEIFDKSDSLGTTSFLQNINKMRALEGELSRTIRAIDRVQAARVHLVSP 465
            +QGLADF+K++GAAR  AM AVT ALIGFFAF+I+R+++P MT LFT+LS EDS  I+K+L+RQ + YEIRNEG++IMVP+D+V RLRMK AEGGLPKGGGVGYE+FDKSD+LGTTSF+QNIN +RALEGEL+RTIRAIDR+QAARVHLV P
Sbjct:    1 MQGLADFLKSIGAARFAAMIAVTAALIGFFAFVIMRVTTPQMTTLFTDLSVEDSSGIIKDLERQGIQYEIRNEGSIIMVPKDKVARLRMKLAEGGLPKGGGVGYEVFDKSDALGTTSFVQNINHLRALEGELARTIRAIDRIQAARVHLVLP 152
[Close]
BLAST of mRNA_P-wetherbeei_contig55024.1.1 vs. uniprot
Match: A0A327K7C4_9HYPH (Flagellar M-ring protein n=1 Tax=Rhodoplanes piscinae TaxID=444923 RepID=A0A327K7C4_9HYPH)

HSP 1 Score: 228 bits (582), Expect = 9.620e-70
Identity = 114/152 (75.00%), Postives = 138/152 (90.79%), Query Frame = 1 
Query:   10 VQGLADFVKTLGAARIGAMAAVTVALIGFFAFMILRLSSPAMTPLFTELSTEDSGAILKELDRQAVIYEIRNEGAVIMVPRDRVMRLRMKFAEGGLPKGGGVGYEIFDKSDSLGTTSFLQNINKMRALEGELSRTIRAIDRVQAARVHLVSP 465
            +QGL  FVKTLG AR+ AM AVT A+IGFFAF+ILR+++P MTPLFT+LS EDS AI+K+L+RQ++ YE++N+GAVI+VPR+RV RLRMK AEGGLPKGGG+GYE+FDKSD+LGTTSF+QNIN +RALEGELSRTIR+IDRVQAARVHLV P
Sbjct:    1 MQGLVTFVKTLGPARLAAMGAVTAAMIGFFAFLILRVTAPVMTPLFTDLSLEDSAAIIKDLERQSIPYELKNDGAVILVPRERVGRLRMKLAEGGLPKGGGMGYELFDKSDALGTTSFVQNINHLRALEGELSRTIRSIDRVQAARVHLVLP 152
[Close]
BLAST of mRNA_P-wetherbeei_contig55024.1.1 vs. uniprot
Match: A0A410V1S0_9BRAD (Flagellar M-ring protein n=189 Tax=Bradyrhizobiaceae TaxID=41294 RepID=A0A410V1S0_9BRAD)

HSP 1 Score: 228 bits (580), Expect = 1.670e-69
Identity = 112/152 (73.68%), Postives = 138/152 (90.79%), Query Frame = 1 
Query:   10 VQGLADFVKTLGAARIGAMAAVTVALIGFFAFMILRLSSPAMTPLFTELSTEDSGAILKELDRQAVIYEIRNEGAVIMVPRDRVMRLRMKFAEGGLPKGGGVGYEIFDKSDSLGTTSFLQNINKMRALEGELSRTIRAIDRVQAARVHLVSP 465
            +QGLADF+K +GAAR GAM AVT ALIGFFAF+I+R+++P MT LFT+LS EDS +I+K+L+RQ + YE+RN+G++IMVP+D+V RLRMK AEGGLPKGGGVGYE+FDKSD+LGTTSF+QNIN +RALEGEL+RTIRAIDR+QAARVHLV P
Sbjct:    1 MQGLADFLKGIGAARFGAMIAVTAALIGFFAFVIMRVTTPQMTTLFTDLSMEDSSSIIKDLERQGIQYELRNDGSIIMVPKDKVTRLRMKLAEGGLPKGGGVGYEVFDKSDALGTTSFVQNINHLRALEGELARTIRAIDRIQAARVHLVLP 152
[Close]
BLAST of mRNA_P-wetherbeei_contig55024.1.1 vs. uniprot
Match: UPI001BADA78E (flagellar M-ring protein FliF n=4 Tax=Bradyrhizobium TaxID=374 RepID=UPI001BADA78E)

HSP 1 Score: 227 bits (579), Expect = 2.750e-69
Identity = 116/152 (76.32%), Postives = 138/152 (90.79%), Query Frame = 1 
Query:   10 VQGLADFVKTLGAARIGAMAAVTVALIGFFAFMILRLSSPAMTPLFTELSTEDSGAILKELDRQAVIYEIRNEGAVIMVPRDRVMRLRMKFAEGGLPKGGGVGYEIFDKSDSLGTTSFLQNINKMRALEGELSRTIRAIDRVQAARVHLVSP 465
            +Q L  F+K LGAAR+ AM AVTVALIGFFAF+I+R+++P MT LFT+LSTEDS AI+KEL+RQA+ +E+RN+GAVIMVP+D+V RLRMK AEGG+PKGGGVGYEIFDKSD+LGTTSF+QNIN +RALEGEL+RTIRAIDRVQAARVHLV P
Sbjct:    1 MQSLVAFLKGLGAARLTAMVAVTVALIGFFAFVIMRVTTPQMTTLFTDLSTEDSSAIIKELERQAIPFELRNDGAVIMVPKDKVTRLRMKLAEGGMPKGGGVGYEIFDKSDALGTTSFVQNINHLRALEGELARTIRAIDRVQAARVHLVLP 152
[Close]
BLAST of mRNA_P-wetherbeei_contig55024.1.1 vs. uniprot
Match: A0A4Q7G827_9BRAD (Flagellar M-ring protein FliF (Fragment) n=8 Tax=Bradyrhizobium TaxID=374 RepID=A0A4Q7G827_9BRAD)

HSP 1 Score: 226 bits (575), Expect = 8.840e-69
Identity = 114/152 (75.00%), Postives = 137/152 (90.13%), Query Frame = 1 
Query:   10 VQGLADFVKTLGAARIGAMAAVTVALIGFFAFMILRLSSPAMTPLFTELSTEDSGAILKELDRQAVIYEIRNEGAVIMVPRDRVMRLRMKFAEGGLPKGGGVGYEIFDKSDSLGTTSFLQNINKMRALEGELSRTIRAIDRVQAARVHLVSP 465
            +Q L  F+K LGAAR+ AM AVT ALIGFFAF+ILR+++P +T LFT+LS EDS AI+KEL+RQA+ +E+RN+GAVIMVP+D+VMRLRMK AEGG+PKGGGVGYEIFDKSD+LGTTSF+QNIN +RALEGEL+RTIRAIDR+QAARVHLV P
Sbjct:    1 MQSLVAFLKGLGAARLAAMVAVTAALIGFFAFVILRVTTPQLTTLFTDLSVEDSSAIVKELERQAIPFELRNDGAVIMVPKDKVMRLRMKLAEGGMPKGGGVGYEIFDKSDALGTTSFVQNINHLRALEGELARTIRAIDRIQAARVHLVLP 152
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig55024.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A4Q8QHX6_9BRAD2.160e-7274.34Flagellar M-ring protein FliF (Fragment) n=1 Tax=B... [more]
UPI0017FBE68C1.720e-7174.34Flagellar M-ring protein FliF n=1 Tax=Bradyrhizobi... [more]
UPI00184F8E453.060e-7177.63Flagellar M-ring protein FliF n=1 Tax=Rhodoplanes ... [more]
A0A537SAE6_9PROT4.640e-7073.03Flagellar M-ring protein FliF (Fragment) n=1 Tax=A... [more]
A0A1H2AW42_9BRAD5.920e-7074.84Flagellar M-ring protein n=2 Tax=Bradyrhizobium ca... [more]
A0A7S8A9A7_9BRAD8.220e-7074.34Flagellar M-ring protein n=9 Tax=Bradyrhizobium Ta... [more]
A0A327K7C4_9HYPH9.620e-7075.00Flagellar M-ring protein n=1 Tax=Rhodoplanes pisci... [more]
A0A410V1S0_9BRAD1.670e-6973.68Flagellar M-ring protein n=189 Tax=Bradyrhizobiace... [more]
UPI001BADA78E2.750e-6976.32flagellar M-ring protein FliF n=4 Tax=Bradyrhizobi... [more]
A0A4Q7G827_9BRAD8.840e-6975.00Flagellar M-ring protein FliF (Fragment) n=8 Tax=B... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig55024contigP-wetherbeei_contig55024:62..526 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog1038860.AXAP01000028_gene564
Preferred namefliF
PFAMsYscJ_FliF,YscJ_FliF_C
Model size465
Max annot lvl28211|Alphaproteobacteria
KEGG koko:K02409
KEGG TC3.A.6.2,3.A.6.3
KEGG Pathwayko02040,map02040
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.58e-70
EggNOG OGsCOG1766@1|root,COG1766@2|Bacteria,1MUQR@1224|Proteobacteria,2TR6J@28211|Alphaproteobacteria,3JS0P@41294|Bradyrhizobiaceae
DescriptionThe M ring may be actively involved in energy transduction
Cds size465
COG categoryN
BRITEko00000,ko00001,ko02035,ko02044
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186820.9845834-CDS-P-wetherbeei_contig55024:61..5261683186820.9845834-CDS-P-wetherbeei_contig55024:61..526Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig55024 62..526 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig55024.1.1prot_P-wetherbeei_contig55024.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig55024 62..526 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig55024.1.1

>prot_P-wetherbeei_contig55024.1.1 ID=prot_P-wetherbeei_contig55024.1.1|Name=mRNA_P-wetherbeei_contig55024.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=155bp
GPLVQGLADFVKTLGAARIGAMAAVTVALIGFFAFMILRLSSPAMTPLFT
ELSTEDSGAILKELDRQAVIYEIRNEGAVIMVPRDRVMRLRMKFAEGGLP
KGGGVGYEIFDKSDSLGTTSFLQNINKMRALEGELSRTIRAIDRVQAARV
HLVSP
back to top

mRNA from alignment at P-wetherbeei_contig55024:62..526+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig55024.1.1 ID=mRNA_P-wetherbeei_contig55024.1.1|Name=mRNA_P-wetherbeei_contig55024.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=465bp|location=Sequence derived from alignment at P-wetherbeei_contig55024:62..526+ (Phaeothamnion wetherbeei SAG_119_79)
GGGCCCCTGGTGCAAGGTCTGGCCGATTTCGTCAAAACGCTCGGCGCCGC
GCGGATCGGCGCCATGGCGGCCGTGACCGTGGCGTTGATCGGCTTCTTCG
CCTTCATGATCCTGCGGCTGTCGTCACCGGCGATGACGCCGCTGTTCACC
GAACTGTCGACCGAGGATTCCGGGGCAATTCTCAAGGAACTCGACCGCCA
GGCCGTCATCTATGAAATCCGCAACGAGGGCGCCGTCATCATGGTGCCGA
GAGACCGGGTGATGCGGCTGCGGATGAAATTCGCCGAAGGCGGCCTGCCC
AAGGGGGGCGGCGTCGGCTACGAGATCTTCGACAAATCCGACTCGCTCGG
AACCACCAGCTTCCTGCAGAACATCAACAAGATGCGGGCGCTGGAGGGAG
AACTTTCGCGGACCATCCGGGCGATCGACCGGGTCCAGGCGGCGCGGGTT
CATCTCGTCAGCCCG
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig55024:62..526+

>mRNA_P-wetherbeei_contig55024.1.1 ID=mRNA_P-wetherbeei_contig55024.1.1|Name=mRNA_P-wetherbeei_contig55024.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=465bp|location=Sequence derived from alignment at P-wetherbeei_contig55024:62..526+ (Phaeothamnion wetherbeei SAG_119_79)
GGGCCCCTGGTGCAAGGTCTGGCCGATTTCGTCAAAACGCTCGGCGCCGC
GCGGATCGGCGCCATGGCGGCCGTGACCGTGGCGTTGATCGGCTTCTTCG
CCTTCATGATCCTGCGGCTGTCGTCACCGGCGATGACGCCGCTGTTCACC
GAACTGTCGACCGAGGATTCCGGGGCAATTCTCAAGGAACTCGACCGCCA
GGCCGTCATCTATGAAATCCGCAACGAGGGCGCCGTCATCATGGTGCCGA
GAGACCGGGTGATGCGGCTGCGGATGAAATTCGCCGAAGGCGGCCTGCCC
AAGGGGGGCGGCGTCGGCTACGAGATCTTCGACAAATCCGACTCGCTCGG
AACCACCAGCTTCCTGCAGAACATCAACAAGATGCGGGCGCTGGAGGGAG
AACTTTCGCGGACCATCCGGGCGATCGACCGGGTCCAGGCGGCGCGGGTT
CATCTCGTCAGCCCG
back to top