mRNA_P-wetherbeei_contig55021.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig55021.1.1
Unique NamemRNA_P-wetherbeei_contig55021.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig55021.1.1 vs. uniprot
Match: A0A3D3UIN5_9PROT (DNA polymerase III subunit gamma/tau (Fragment) n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A3D3UIN5_9PROT)

HSP 1 Score: 204 bits (518), Expect = 1.050e-64
Identity = 105/146 (71.92%), Postives = 118/146 (80.82%), Query Frame = 1 
Query:   34 EEPAFGLEGGSLPVKAPVKVDVPAYRVLARKYRPRSFAELIGQEAMVRTLSNAIDSGRLAHAFILTGVRGVGKTTTARILARCLNYETADGLSGPCIQPPNDGIHCAAIAESRHVDVIEMDAASRTGIDDIREIIEGVRYRPASAR 471
            + P  GL GG+   +A        Y+VLARKYRP  FA+LIGQEA+VRTL+NAI + RLAHA+ILTGVRGVGKTTTARILARCLNYET  G +GP   P  +GIHCAAIA+SRHVDVIEMDAASRTGIDDIREIIEG RY+PASAR
Sbjct:   22 DAPMLGLTGGTAAPQADK-----GYQVLARKYRPDCFADLIGQEALVRTLTNAIATSRLAHAYILTGVRGVGKTTTARILARCLNYETESGDAGPTANPGKEGIHCAAIAQSRHVDVIEMDAASRTGIDDIREIIEGARYKPASAR 162
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BLAST of mRNA_P-wetherbeei_contig55021.1.1 vs. uniprot
Match: A0A3C0TT76_9PROT (DNA polymerase III subunit gamma/tau n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A3C0TT76_9PROT)

HSP 1 Score: 212 bits (540), Expect = 5.020e-63
Identity = 112/157 (71.34%), Postives = 119/157 (75.80%), Query Frame = 1 
Query:    1 MDETAFPGTAEEEPAFGLEGGSLPVKAPVKVDVPAYRVLARKYRPRSFAELIGQEAMVRTLSNAIDSGRLAHAFILTGVRGVGKTTTARILARCLNYETADGLSGPCIQPPNDGIHCAAIAESRHVDVIEMDAASRTGIDDIREIIEGVRYRPASAR 471
            MD+  FP    E P    E                YRVLARKYRPR FA+LIGQEAMVRTL NAI SGRLAHA+ILTGVRGVGKTTTARILARCLNY T DG+S P I P  +G+HCAAIAESRHVDV+EMDAASRTGIDDIREIIE VRYRPASAR
Sbjct:    3 MDDPDFPALLTESPPPAQE----------------YRVLARKYRPRRFADLIGQEAMVRTLGNAIASGRLAHAYILTGVRGVGKTTTARILARCLNYTTPDGVSAPTIDPSQEGLHCAAIAESRHVDVLEMDAASRTGIDDIREIIESVRYRPASAR 143
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BLAST of mRNA_P-wetherbeei_contig55021.1.1 vs. uniprot
Match: A0A351T5R9_9PROT (DNA polymerase III subunit gamma/tau n=3 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A351T5R9_9PROT)

HSP 1 Score: 204 bits (518), Expect = 2.260e-59
Identity = 105/146 (71.92%), Postives = 118/146 (80.82%), Query Frame = 1 
Query:   34 EEPAFGLEGGSLPVKAPVKVDVPAYRVLARKYRPRSFAELIGQEAMVRTLSNAIDSGRLAHAFILTGVRGVGKTTTARILARCLNYETADGLSGPCIQPPNDGIHCAAIAESRHVDVIEMDAASRTGIDDIREIIEGVRYRPASAR 471
            + P  GL GG+   +A        Y+VLARKYRP  FA+LIGQEA+VRTL+NAI + RLAHA+ILTGVRGVGKTTTARILARCLNYET  G +GP   P  +GIHCAAIA+SRHVDVIEMDAASRTGIDDIREIIEG RY+PASAR
Sbjct:   22 DAPMLGLTGGTAAPQADK-----GYQVLARKYRPDCFADLIGQEALVRTLTNAIATNRLAHAYILTGVRGVGKTTTARILARCLNYETESGDAGPTANPGKEGIHCAAIAQSRHVDVIEMDAASRTGIDDIREIIEGARYKPASAR 162
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BLAST of mRNA_P-wetherbeei_contig55021.1.1 vs. uniprot
Match: A0A2Z3IIF4_9HYPH (DNA polymerase III subunit gamma/tau n=4 Tax=Microvirga TaxID=186650 RepID=A0A2Z3IIF4_9HYPH)

HSP 1 Score: 194 bits (494), Expect = 3.310e-56
Identity = 102/157 (64.97%), Postives = 117/157 (74.52%), Query Frame = 1 
Query:    1 MDETAFPGTAEEEPAFGLEGGSLPVKAPVKVDVPAYRVLARKYRPRSFAELIGQEAMVRTLSNAIDSGRLAHAFILTGVRGVGKTTTARILARCLNYETADGLSGPCIQPPNDGIHCAAIAESRHVDVIEMDAASRTGIDDIREIIEGVRYRPASAR 471
            MDET       +EPA     G     AP      AYRVLARKYRPR+F +LIGQEAMVRTLSNA ++GR+  A++LTGVRGVGKTTTARILAR LNY+TADG  GP I  P  G+HC AI ESRHVDV+EMDAAS TGIDD+R+II+G+RY P SAR
Sbjct:    1 MDETTAGTPPNDEPALP---GFPSAPAPAASGNGAYRVLARKYRPRTFDDLIGQEAMVRTLSNAFETGRIPQAWMLTGVRGVGKTTTARILARGLNYQTADGTGGPTIHMPGLGVHCEAIMESRHVDVLEMDAASHTGIDDVRQIIDGIRYSPVSAR 154
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BLAST of mRNA_P-wetherbeei_contig55021.1.1 vs. uniprot
Match: A0A081BB95_9HYPH (DNA polymerase III subunit gamma/tau n=1 Tax=Tepidicaulis marinus TaxID=1333998 RepID=A0A081BB95_9HYPH)

HSP 1 Score: 195 bits (495), Expect = 3.340e-56
Identity = 101/155 (65.16%), Postives = 113/155 (72.90%), Query Frame = 1 
Query:    7 ETAFPGTAEEEPAFGLEGGSLPVKAPVKVDVPAYRVLARKYRPRSFAELIGQEAMVRTLSNAIDSGRLAHAFILTGVRGVGKTTTARILARCLNYETADGLSGPCIQPPNDGIHCAAIAESRHVDVIEMDAASRTGIDDIREIIEGVRYRPASAR 471
            E + P     EP  GL GG    +AP       YRVLARKYRP +F ++IGQEAMVRTLSNA + GR+AHAF+LTGVRGVGKTTTARILAR LNY T DG  GP I     G+HC +I ESRH D++EMDAASRTGIDDIREIIE VRY P SAR
Sbjct:   16 EESAPADPASEPGLGLLGGEE--QAPSTAKASDYRVLARKYRPATFEDMIGQEAMVRTLSNAFEKGRIAHAFMLTGVRGVGKTTTARILARALNYMTEDGKGGPTIHLEEPGVHCQSIMESRHPDILEMDAASRTGIDDIREIIESVRYLPVSAR 168
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BLAST of mRNA_P-wetherbeei_contig55021.1.1 vs. uniprot
Match: UPI001B316206 (DNA polymerase III subunit gamma/tau n=1 Tax=Microvirga antarctica TaxID=2819233 RepID=UPI001B316206)

HSP 1 Score: 194 bits (492), Expect = 6.070e-56
Identity = 103/157 (65.61%), Postives = 119/157 (75.80%), Query Frame = 1 
Query:    1 MDETAFPGTAEEEPAFGLEGGSLPVKAPVKVDVPAYRVLARKYRPRSFAELIGQEAMVRTLSNAIDSGRLAHAFILTGVRGVGKTTTARILARCLNYETADGLSGPCIQPPNDGIHCAAIAESRHVDVIEMDAASRTGIDDIREIIEGVRYRPASAR 471
            MDET      ++EPA  L G  L  K P       YRVLARKYRPR+F +LIGQEAMVRTLSNA D+GR+  A++LTGVRGVGKTTTARILAR LNY+ ADG   P I  P+ G+HC AI ESRHVDV+EMDAAS TGIDD+R+II+G+RY PASAR
Sbjct:    1 MDETTAGTPFDDEPA--LPGFPLEPKPPA---TSPYRVLARKYRPRTFDDLIGQEAMVRTLSNAFDTGRIPQAWMLTGVRGVGKTTTARILARALNYQKADGSGAPTIHMPDLGLHCEAIMESRHVDVLEMDAASHTGIDDVRQIIDGIRYSPASAR 152
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BLAST of mRNA_P-wetherbeei_contig55021.1.1 vs. uniprot
Match: A0A7C9VHD8_9BRAD (DNA polymerase III subunit gamma/tau (Fragment) n=1 Tax=Candidatus Afipia apatlaquensis TaxID=2712852 RepID=A0A7C9VHD8_9BRAD)

HSP 1 Score: 184 bits (468), Expect = 1.310e-55
Identity = 94/150 (62.67%), Postives = 114/150 (76.00%), Query Frame = 1 
Query:   25 TAEEEPAFGLEGGSLPVKAPVKVDVPAYRVLARKYRPRSFAELIGQEAMVRTLSNAIDSGRLAHAFILTGVRGVGKTTTARILARCLNYETADG-LSGPCIQPPNDGIHCAAIAESRHVDVIEMDAASRTGIDDIREIIEGVRYRPASAR 471
            TA+++P F L G      AP       YRVLARKYRP +F +LIGQEAMVRT+SN+ ++GR+  A+ILTGVRGVGKTTTARILAR LNYE  DG + GP I  P  G+HC AI ESRH+D++EMDAAS TGIDD+R+I +GVRY P+SAR
Sbjct:   10 TADDQPGFELGG----TPAPSAGSSSGYRVLARKYRPGTFEDLIGQEAMVRTISNSFEAGRVPQAWILTGVRGVGKTTTARILARALNYELPDGSVKGPTIHMPKMGVHCQAIMESRHIDILEMDAASHTGIDDVRQITDGVRYAPSSAR 155
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BLAST of mRNA_P-wetherbeei_contig55021.1.1 vs. uniprot
Match: A0A6N6VMP1_9HYPH (DNA polymerase III subunit gamma/tau n=1 Tax=Parvibaculum sedimenti TaxID=2608632 RepID=A0A6N6VMP1_9HYPH)

HSP 1 Score: 191 bits (486), Expect = 6.660e-55
Identity = 104/156 (66.67%), Postives = 116/156 (74.36%), Query Frame = 1 
Query:    4 DETAFPGTAEEEPAFGLEGGSLPVKAPVKVDVPAYRVLARKYRPRSFAELIGQEAMVRTLSNAIDSGRLAHAFILTGVRGVGKTTTARILARCLNYETADGLSGPCIQPPNDGIHCAAIAESRHVDVIEMDAASRTGIDDIREIIEGVRYRPASAR 471
            DE   P  AEE P F L GG      P +     Y+VLARKYRP SF +L+GQEAMVRTLSNA ++GR+AHAF+LTGVRGVGKTTTARILAR LNYE   G++ P I     G+HC AI ESRHVDV+EMDAASRTGIDDIREIIE VRY P SAR
Sbjct:   13 DEPHRPDPAEE-PGFALLGGEA---KPARQQASGYQVLARKYRPSSFEDLVGQEAMVRTLSNAFETGRIAHAFMLTGVRGVGKTTTARILARALNYEKP-GVTAPTIHMDGFGVHCEAIMESRHVDVMEMDAASRTGIDDIREIIESVRYLPVSAR 163
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BLAST of mRNA_P-wetherbeei_contig55021.1.1 vs. uniprot
Match: A0A382V2L8_9ZZZZ (Uncharacterized protein (Fragment) n=1 Tax=marine metagenome TaxID=408172 RepID=A0A382V2L8_9ZZZZ)

HSP 1 Score: 179 bits (454), Expect = 1.070e-54
Identity = 90/134 (67.16%), Postives = 106/134 (79.10%), Query Frame = 1 
Query:   70 PVKAPVKVDVPAYRVLARKYRPRSFAELIGQEAMVRTLSNAIDSGRLAHAFILTGVRGVGKTTTARILARCLNYETADGLSGPCIQPPNDGIHCAAIAESRHVDVIEMDAASRTGIDDIREIIEGVRYRPASAR 471
            PVK  +  D   Y+VLARKYRP +F+ LIGQE +VRTL+NA  +GRLAHAFILTGVRGVGKTTTARI+AR LN    DG   P  +P ++  HC AIAE RHVD++EMDAASRTG+DDIRE+I+GVRYRP SAR
Sbjct:    9 PVKTSLDPDPIPYQVLARKYRPSTFSGLIGQEVLVRTLTNAFKTGRLAHAFILTGVRGVGKTTTARIIARALNCIGPDGAGEPTTEPCSECEHCKAIAEDRHVDILEMDAASRTGVDDIRELIDGVRYRPTSAR 142
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BLAST of mRNA_P-wetherbeei_contig55021.1.1 vs. uniprot
Match: A0A5N3PCX9_9HYPH (DNA polymerase III subunit gamma/tau n=1 Tax=Microvirga brassicacearum TaxID=2580413 RepID=A0A5N3PCX9_9HYPH)

HSP 1 Score: 190 bits (483), Expect = 1.260e-54
Identity = 101/157 (64.33%), Postives = 120/157 (76.43%), Query Frame = 1 
Query:    1 MDETAFPGTAEEEPAFGLEGGSLPVKAPVKVDVPAYRVLARKYRPRSFAELIGQEAMVRTLSNAIDSGRLAHAFILTGVRGVGKTTTARILARCLNYETADGLSGPCIQPPNDGIHCAAIAESRHVDVIEMDAASRTGIDDIREIIEGVRYRPASAR 471
            MDETA      +EPA  L G   P++ P     P YRVLARKYRPR+F +LIGQEAMVRTLSNA ++GR+  A++LTGVRGVGKTTTARILAR LNY+ ADG   P I  P+ G+HC AI ESRHVDV+EMDAAS TGIDD+R+II+G+RY P +AR
Sbjct:    1 MDETAAGTPLNDEPA--LPG--FPLEPPAAAGSP-YRVLARKYRPRTFEDLIGQEAMVRTLSNAFETGRIPQAWMLTGVRGVGKTTTARILARGLNYQKADGSGAPTIHMPDLGLHCEAIMESRHVDVLEMDAASHTGIDDVRQIIDGIRYSPVTAR 152
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig55021.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A3D3UIN5_9PROT1.050e-6471.92DNA polymerase III subunit gamma/tau (Fragment) n=... [more]
A0A3C0TT76_9PROT5.020e-6371.34DNA polymerase III subunit gamma/tau n=1 Tax=Alpha... [more]
A0A351T5R9_9PROT2.260e-5971.92DNA polymerase III subunit gamma/tau n=3 Tax=Alpha... [more]
A0A2Z3IIF4_9HYPH3.310e-5664.97DNA polymerase III subunit gamma/tau n=4 Tax=Micro... [more]
A0A081BB95_9HYPH3.340e-5665.16DNA polymerase III subunit gamma/tau n=1 Tax=Tepid... [more]
UPI001B3162066.070e-5665.61DNA polymerase III subunit gamma/tau n=1 Tax=Micro... [more]
A0A7C9VHD8_9BRAD1.310e-5562.67DNA polymerase III subunit gamma/tau (Fragment) n=... [more]
A0A6N6VMP1_9HYPH6.660e-5566.67DNA polymerase III subunit gamma/tau n=1 Tax=Parvi... [more]
A0A382V2L8_9ZZZZ1.070e-5467.16Uncharacterized protein (Fragment) n=1 Tax=marine ... [more]
A0A5N3PCX9_9HYPH1.260e-5464.33DNA polymerase III subunit gamma/tau n=1 Tax=Micro... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig55021contigP-wetherbeei_contig55021:5..475 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog1333998.M2A_1812
Preferred namednaX
PFAMsDNA_pol3_delta2,DNA_pol3_gamma3,DUF3646
Model size471
Max annot lvl28211|Alphaproteobacteria
KEGG rclassRC02795
KEGG koko:K02343
KEGG ReactionR00375,R00376,R00377,R00378
KEGG Pathwayko00230,ko00240,ko01100,ko03030,ko03430,ko03440,map00230,map00240,map01100,map03030,map03430,map03440
KEGG ModuleM00260
Hectar predicted targeting categoryother localisation
Exons1
Evalue5.47e-57
EggNOG OGsCOG2812@1|root,COG2812@2|Bacteria,1MVCK@1224|Proteobacteria,2TRPB@28211|Alphaproteobacteria,4BPKU@82117|unclassified Alphaproteobacteria
EC2.7.7.7
DescriptionDNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity
Cds size471
COG categoryL
BRITEko00000,ko00001,ko00002,ko01000,ko03032,ko03400
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186820.950621-CDS-P-wetherbeei_contig55021:4..4751683186820.950621-CDS-P-wetherbeei_contig55021:4..475Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig55021 5..475 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig55021.1.1prot_P-wetherbeei_contig55021.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig55021 5..475 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig55021.1.1

>prot_P-wetherbeei_contig55021.1.1 ID=prot_P-wetherbeei_contig55021.1.1|Name=mRNA_P-wetherbeei_contig55021.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=157bp
MDETAFPGTAEEEPAFGLEGGSLPVKAPVKVDVPAYRVLARKYRPRSFAE
LIGQEAMVRTLSNAIDSGRLAHAFILTGVRGVGKTTTARILARCLNYETA
DGLSGPCIQPPNDGIHCAAIAESRHVDVIEMDAASRTGIDDIREIIEGVR
YRPASAR
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mRNA from alignment at P-wetherbeei_contig55021:5..475-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig55021.1.1 ID=mRNA_P-wetherbeei_contig55021.1.1|Name=mRNA_P-wetherbeei_contig55021.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=471bp|location=Sequence derived from alignment at P-wetherbeei_contig55021:5..475- (Phaeothamnion wetherbeei SAG_119_79)
ATGGATGAAACGGCTTTTCCAGGCACGGCAGAAGAAGAACCGGCTTTCGG
TCTGGAGGGCGGCAGTTTGCCGGTAAAGGCGCCGGTAAAAGTGGATGTAC
CCGCTTACCGGGTGCTGGCGCGCAAATACCGGCCGCGCAGCTTTGCCGAA
CTGATCGGCCAGGAGGCCATGGTGCGCACCCTCAGCAACGCCATCGATAG
CGGGCGGCTGGCGCATGCCTTTATTCTGACCGGCGTGCGGGGCGTTGGCA
AAACCACCACGGCGCGCATTCTGGCGCGCTGCCTGAATTATGAAACTGCG
GATGGCCTGTCCGGCCCCTGCATCCAGCCCCCTAATGACGGAATACATTG
CGCGGCGATTGCCGAATCGCGCCATGTGGATGTGATCGAAATGGATGCGG
CCTCGCGCACCGGCATCGACGACATCCGCGAGATCATCGAAGGGGTGCGC
TATCGCCCGGCCAGTGCGCGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig55021:5..475-

>mRNA_P-wetherbeei_contig55021.1.1 ID=mRNA_P-wetherbeei_contig55021.1.1|Name=mRNA_P-wetherbeei_contig55021.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=471bp|location=Sequence derived from alignment at P-wetherbeei_contig55021:5..475- (Phaeothamnion wetherbeei SAG_119_79)
ATGGATGAAACGGCTTTTCCAGGCACGGCAGAAGAAGAACCGGCTTTCGG
TCTGGAGGGCGGCAGTTTGCCGGTAAAGGCGCCGGTAAAAGTGGATGTAC
CCGCTTACCGGGTGCTGGCGCGCAAATACCGGCCGCGCAGCTTTGCCGAA
CTGATCGGCCAGGAGGCCATGGTGCGCACCCTCAGCAACGCCATCGATAG
CGGGCGGCTGGCGCATGCCTTTATTCTGACCGGCGTGCGGGGCGTTGGCA
AAACCACCACGGCGCGCATTCTGGCGCGCTGCCTGAATTATGAAACTGCG
GATGGCCTGTCCGGCCCCTGCATCCAGCCCCCTAATGACGGAATACATTG
CGCGGCGATTGCCGAATCGCGCCATGTGGATGTGATCGAAATGGATGCGG
CCTCGCGCACCGGCATCGACGACATCCGCGAGATCATCGAAGGGGTGCGC
TATCGCCCGGCCAGTGCGCGC
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