mRNA_P-wetherbeei_contig54997.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig54997.1.1
Unique NamemRNA_P-wetherbeei_contig54997.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig54997.1.1 vs. uniprot
Match: A0A7W0QR16_9CHLR (Sugar ABC transporter permease n=1 Tax=Chloroflexia bacterium TaxID=2448782 RepID=A0A7W0QR16_9CHLR)

HSP 1 Score: 236 bits (603), Expect = 1.470e-75
Identity = 116/144 (80.56%), Postives = 131/144 (90.97%), Query Frame = 1
Query:    4 NFAWTADPNTALGAVIAIDVWKTTPFMALLLLAGLQVIPSDVYEAAYVDGASKWQQFWQITLPLLRPALLVALIFRTMDSFRVFDLIFVLKGAATETMTVAVYTQQQLIQANRLGFGSAAAVFIFLCIGLMVLGYSRLITVEES 435
            NF+W  +  T + +VIAIDVWKTTPFMALLLLAGLQ+IP DVYEAAYVDGASKWQQFWQ+TLPL++PALLVALIFRTMDSFRVFDLI+VLK  +TET+TVA+YTQQ L+QANRLG GSAAAV +FLCIGLMV GYSRLITVEE+
Sbjct:  182 NFSWITNKATVMASVIAIDVWKTTPFMALLLLAGLQIIPGDVYEAAYVDGASKWQQFWQMTLPLIKPALLVALIFRTMDSFRVFDLIYVLKQGSTETITVAIYTQQLLLQANRLGAGSAAAVVVFLCIGLMVFGYSRLITVEEN 325          
BLAST of mRNA_P-wetherbeei_contig54997.1.1 vs. uniprot
Match: A0A838GCN4_9CHLR (Sugar ABC transporter permease n=1 Tax=Chloroflexia bacterium TaxID=2448782 RepID=A0A838GCN4_9CHLR)

HSP 1 Score: 234 bits (597), Expect = 1.120e-74
Identity = 115/144 (79.86%), Postives = 132/144 (91.67%), Query Frame = 1
Query:    4 NFAWTADPNTALGAVIAIDVWKTTPFMALLLLAGLQVIPSDVYEAAYVDGASKWQQFWQITLPLLRPALLVALIFRTMDSFRVFDLIFVLKGAATETMTVAVYTQQQLIQANRLGFGSAAAVFIFLCIGLMVLGYSRLITVEES 435
            NF+W  +  TA+ AV+AIDVWKTTPFMALL+LAGLQ+IP DVYEAAYVDGASKWQQFWQ+TLPL++PALLVALIFRTMDSFRVFDLI+VLK  +T+TMTVA+YT Q LIQ++RLG GSAAAVFIF+CIGLMV GYSRLITVEE+
Sbjct:  180 NFSWITNRGTAMIAVVAIDVWKTTPFMALLILAGLQIIPGDVYEAAYVDGASKWQQFWQMTLPLVKPALLVALIFRTMDSFRVFDLIYVLKQGSTDTMTVAIYTYQLLIQSSRLGAGSAAAVFIFVCIGLMVFGYSRLITVEEN 323          
BLAST of mRNA_P-wetherbeei_contig54997.1.1 vs. uniprot
Match: A0A7W0A5N3_9CHLR (Sugar ABC transporter permease n=1 Tax=Chloroflexia bacterium TaxID=2448782 RepID=A0A7W0A5N3_9CHLR)

HSP 1 Score: 212 bits (539), Expect = 6.810e-66
Identity = 108/145 (74.48%), Postives = 125/145 (86.21%), Query Frame = 1
Query:    1 TNFAWTADPNTALGAVIAIDVWKTTPFMALLLLAGLQVIPSDVYEAAYVDGASKWQQFWQITLPLLRPALLVALIFRTMDSFRVFDLIFVLKGAATETMTVAVYTQQQLIQANRLGFGSAAAVFIFLCIGLMVLGYSRLITVEES 435
            T  AW A+P+TALGAVIA+DVWKTTPFMALLLLAGLQVIP+DVYEAAYVDGASK QQF+ ITLPLL+PALLVALIFRT+D+FRVFD+IFVL G A +TM++A+YTQQQLI + R+G GSA AV IFL IG +   Y+RLI VEE 
Sbjct:  180 TFLAWAANPSTALGAVIAVDVWKTTPFMALLLLAGLQVIPTDVYEAAYVDGASKIQQFFHITLPLLKPALLVALIFRTLDAFRVFDMIFVLNGYALDTMSIAIYTQQQLIASQRIGEGSAPAVLIFLTIGTLAFIYTRLIKVEEG 324          
BLAST of mRNA_P-wetherbeei_contig54997.1.1 vs. uniprot
Match: A0A7V9HGV1_9CHLR (Sugar ABC transporter permease n=1 Tax=Chloroflexia bacterium TaxID=2448782 RepID=A0A7V9HGV1_9CHLR)

HSP 1 Score: 209 bits (532), Expect = 5.650e-65
Identity = 103/142 (72.54%), Postives = 122/142 (85.92%), Query Frame = 1
Query:   10 AWTADPNTALGAVIAIDVWKTTPFMALLLLAGLQVIPSDVYEAAYVDGASKWQQFWQITLPLLRPALLVALIFRTMDSFRVFDLIFVLKGAATETMTVAVYTQQQLIQANRLGFGSAAAVFIFLCIGLMVLGYSRLITVEES 435
            AW A+  TAL A+IA+DVWKTTPFMALLLLAGLQVIP DVYEAA VDGAS WQQFWQITLPLLRPALLVALIFRT+D+FRVFD++FV+KG A +T+T+A+Y +Q +I    LG G+AA+V IFL IGLMV+GY+RL+ VEE 
Sbjct:  172 AWIANATTALPAIIAVDVWKTTPFMALLLLAGLQVIPGDVYEAAKVDGASPWQQFWQITLPLLRPALLVALIFRTLDAFRVFDVVFVMKGTALDTITLAIYARQTMIDEQWLGRGAAASVVIFLAIGLMVIGYTRLVRVEEE 313          
BLAST of mRNA_P-wetherbeei_contig54997.1.1 vs. uniprot
Match: A0A7W0V589_9CHLR (Sugar ABC transporter permease n=2 Tax=Chloroflexia bacterium TaxID=2448782 RepID=A0A7W0V589_9CHLR)

HSP 1 Score: 207 bits (527), Expect = 1.590e-64
Identity = 100/145 (68.97%), Postives = 124/145 (85.52%), Query Frame = 1
Query:    1 TNFAWTADPNTALGAVIAIDVWKTTPFMALLLLAGLQVIPSDVYEAAYVDGASKWQQFWQITLPLLRPALLVALIFRTMDSFRVFDLIFVLKGAATETMTVAVYTQQQLIQANRLGFGSAAAVFIFLCIGLMVLGYSRLITVEES 435
            T  AW A+  T+L ++IA+DVWKTTPFMALLLLAGLQ+IP DVYEAA VDGASKWQQFWQITLPLL+PALLVALIFRT+D+FRVFD++FV+KGAA +T+T+A+Y +Q +I    LG G+AA+V IF CI L+V+ YSRL+ VEE+
Sbjct:  145 TPVAWIANATTSLPSIIAVDVWKTTPFMALLLLAGLQIIPGDVYEAATVDGASKWQQFWQITLPLLKPALLVALIFRTLDAFRVFDVVFVMKGAALDTITLAIYARQTMIDEQYLGRGAAASVVIFFCIALLVIVYSRLVRVEET 289          
BLAST of mRNA_P-wetherbeei_contig54997.1.1 vs. uniprot
Match: A0A7W0TU70_9CHLR (Sugar ABC transporter permease n=1 Tax=Chloroflexia bacterium TaxID=2448782 RepID=A0A7W0TU70_9CHLR)

HSP 1 Score: 205 bits (522), Expect = 7.160e-64
Identity = 100/142 (70.42%), Postives = 125/142 (88.03%), Query Frame = 1
Query:   10 AWTADPNTALGAVIAIDVWKTTPFMALLLLAGLQVIPSDVYEAAYVDGASKWQQFWQITLPLLRPALLVALIFRTMDSFRVFDLIFVLKGAATETMTVAVYTQQQLIQANRLGFGSAAAVFIFLCIGLMVLGYSRLITVEES 435
            AW A+P TAL A+IA+DVWKTTPFMALLLLAGLQ+IP DVYEA+ VDGASKWQQFWQITLPL++PALLVALIFRT+D+FRVFD+I+V+KG ATET+++AV  +++LI  ++LG GSA AV IFLCI ++V+ Y+RL+ VEE 
Sbjct:  140 AWLANPTTALPAIIAVDVWKTTPFMALLLLAGLQLIPGDVYEASTVDGASKWQQFWQITLPLIKPALLVALIFRTLDAFRVFDVIYVMKGEATETISLAVLARRELIGNSKLGEGSAIAVIIFLCIAVLVVIYTRLVRVEEQ 281          
BLAST of mRNA_P-wetherbeei_contig54997.1.1 vs. uniprot
Match: A0A7W1B3S3_9ACTN (Sugar ABC transporter permease n=1 Tax=Propionibacteriaceae bacterium TaxID=2021380 RepID=A0A7W1B3S3_9ACTN)

HSP 1 Score: 205 bits (522), Expect = 3.240e-63
Identity = 96/143 (67.13%), Postives = 124/143 (86.71%), Query Frame = 1
Query:    4 NFAWTADPNTALGAVIAIDVWKTTPFMALLLLAGLQVIPSDVYEAAYVDGASKWQQFWQITLPLLRPALLVALIFRTMDSFRVFDLIFVLKGAATETMTVAVYTQQQLIQANRLGFGSAAAVFIFLCIGLMVLGYSRLITVEE 432
            N A+ A P+TAL A++A+DVWKTTPFMALLLLAGLQ+IP+D+YEA+ VDGASKWQQFWQ+TLP+LRPALLVALIFRT+D+FRVFD++FV+KG + +T+T+A+Y +  L+  +RLG  SA +VFIF CIGL+V  Y+RL+ VEE
Sbjct:  190 NIAFIARPSTALPAIVAVDVWKTTPFMALLLLAGLQIIPTDIYEASTVDGASKWQQFWQMTLPMLRPALLVALIFRTLDAFRVFDVVFVMKGVSVDTITLAIYARNALVDGDRLGRTSAVSVFIFACIGLLVFVYTRLVRVEE 332          
BLAST of mRNA_P-wetherbeei_contig54997.1.1 vs. uniprot
Match: A0A7W1DX43_9CHLR (Sugar ABC transporter permease n=1 Tax=Chloroflexia bacterium TaxID=2448782 RepID=A0A7W1DX43_9CHLR)

HSP 1 Score: 204 bits (519), Expect = 9.450e-63
Identity = 98/145 (67.59%), Postives = 127/145 (87.59%), Query Frame = 1
Query:    4 NFAWTADPNTALGAVIAIDVWKTTPFMALLLLAGLQVIPSDVYEAAYVDGASKWQQFWQITLPLLRPALLVALIFRTMDSFRVFDLIFVLKGAATETMTVAVYTQQQLIQAN-RLGFGSAAAVFIFLCIGLMVLGYSRLITVEES 435
            + A+TA P+ AL AV+A+DVWKTTPFMALLLLAGLQ+IP D+YEA+ VDGASKWQQFWQ+TLP+LRPALLVALIFRT+D+FRVFD+++V+KGAA ++MT+A+Y ++ LIQ   RLG  SAA+V IFLCIG++V  Y+R++ VEE+
Sbjct:  190 SIAFTARPDMALAAVVAVDVWKTTPFMALLLLAGLQIIPGDIYEASRVDGASKWQQFWQMTLPMLRPALLVALIFRTLDAFRVFDVVYVMKGAAVQSMTLAIYARETLIQGQGRLGRASAASVIIFLCIGVLVFIYTRMVKVEEA 334          
BLAST of mRNA_P-wetherbeei_contig54997.1.1 vs. uniprot
Match: A0A7V8VXM7_9CHLR (Sugar ABC transporter permease n=1 Tax=Chloroflexia bacterium TaxID=2448782 RepID=A0A7V8VXM7_9CHLR)

HSP 1 Score: 193 bits (491), Expect = 2.190e-61
Identity = 97/119 (81.51%), Postives = 107/119 (89.92%), Query Frame = 1
Query:   79 FMALLLLAGLQVIPSDVYEAAYVDGASKWQQFWQITLPLLRPALLVALIFRTMDSFRVFDLIFVLKGAATETMTVAVYTQQQLIQANRLGFGSAAAVFIFLCIGLMVLGYSRLITVEES 435
            FMALLLLAGLQ+IPSDVYEAAYVDGASKWQQFWQITLPL+RPALLVALIFRTMDSFRVFDLI+VLKG   +T+T+A+YTQQ LIQ  RLG GSA AV IF+CI +MV GYSRLI VEE+
Sbjct:    1 FMALLLLAGLQIIPSDVYEAAYVDGASKWQQFWQITLPLVRPALLVALIFRTMDSFRVFDLIYVLKGFFNDTLTIAIYTQQTLIQNQRLGLGSAGAVLIFICIAMMVAGYSRLIQVEEN 119          
BLAST of mRNA_P-wetherbeei_contig54997.1.1 vs. uniprot
Match: A0A6J4USK1_9CHLR (Maltodextrin ABC transporter, permease protein MdxF n=1 Tax=uncultured Thermomicrobiales bacterium TaxID=1645740 RepID=A0A6J4USK1_9CHLR)

HSP 1 Score: 199 bits (505), Expect = 1.360e-60
Identity = 96/138 (69.57%), Postives = 117/138 (84.78%), Query Frame = 1
Query:   22 DPNTALGAVIAIDVWKTTPFMALLLLAGLQVIPSDVYEAAYVDGASKWQQFWQITLPLLRPALLVALIFRTMDSFRVFDLIFVLKGAATETMTVAVYTQQQLIQANRLGFGSAAAVFIFLCIGLMVLGYSRLITVEES 435
            DP  +L ++IA+DVWKTTPFMALLLLAGLQ IP DVYEA+ +DGA+KWQQFWQITLPL+RPALLVALIFRTMDSFRVFD+++V+K  + +T T+A+Y QQ LI  +RLG  SA AV IFLCI LMV+ Y+RL+ VEE+
Sbjct:  200 DPTLSLFSIIAVDVWKTTPFMALLLLAGLQTIPGDVYEASNIDGATKWQQFWQITLPLVRPALLVALIFRTMDSFRVFDVVYVMKQGSLDTQTLAIYAQQALINGDRLGRTSAVAVVIFLCIALMVVAYTRLVRVEEN 337          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig54997.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7W0QR16_9CHLR1.470e-7580.56Sugar ABC transporter permease n=1 Tax=Chloroflexi... [more]
A0A838GCN4_9CHLR1.120e-7479.86Sugar ABC transporter permease n=1 Tax=Chloroflexi... [more]
A0A7W0A5N3_9CHLR6.810e-6674.48Sugar ABC transporter permease n=1 Tax=Chloroflexi... [more]
A0A7V9HGV1_9CHLR5.650e-6572.54Sugar ABC transporter permease n=1 Tax=Chloroflexi... [more]
A0A7W0V589_9CHLR1.590e-6468.97Sugar ABC transporter permease n=2 Tax=Chloroflexi... [more]
A0A7W0TU70_9CHLR7.160e-6470.42Sugar ABC transporter permease n=1 Tax=Chloroflexi... [more]
A0A7W1B3S3_9ACTN3.240e-6367.13Sugar ABC transporter permease n=1 Tax=Propionibac... [more]
A0A7W1DX43_9CHLR9.450e-6367.59Sugar ABC transporter permease n=1 Tax=Chloroflexi... [more]
A0A7V8VXM7_9CHLR2.190e-6181.51Sugar ABC transporter permease n=1 Tax=Chloroflexi... [more]
A0A6J4USK1_9CHLR1.360e-6069.57Maltodextrin ABC transporter, permease protein Mdx... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig54997contigP-wetherbeei_contig54997:18..455 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog670487.Ocepr_0506
PFAMsBPD_transp_1
Model size438
Max annot lvl1297|Deinococcus-Thermus
KEGG koko:K10237
KEGG TC3.A.1.1.17
KEGG Pathwayko02010,map02010
KEGG ModuleM00204
Hectar predicted targeting categoryother localisation
Exons1
Evalue3.86e-53
EggNOG OGsCOG1175@1|root,COG1175@2|Bacteria,1WI9Z@1297|Deinococcus-Thermus
DescriptionPFAM binding-protein-dependent transport systems inner membrane component
Cds size438
COG categoryG
BRITEko00000,ko00001,ko00002,ko02000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186820.1017873-CDS-P-wetherbeei_contig54997:17..4551683186820.1017873-CDS-P-wetherbeei_contig54997:17..455Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig54997 18..455 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig54997.1.1prot_P-wetherbeei_contig54997.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig54997 18..455 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig54997.1.1

>prot_P-wetherbeei_contig54997.1.1 ID=prot_P-wetherbeei_contig54997.1.1|Name=mRNA_P-wetherbeei_contig54997.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=146bp
TNFAWTADPNTALGAVIAIDVWKTTPFMALLLLAGLQVIPSDVYEAAYVD
GASKWQQFWQITLPLLRPALLVALIFRTMDSFRVFDLIFVLKGAATETMT
VAVYTQQQLIQANRLGFGSAAAVFIFLCIGLMVLGYSRLITVEES*
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mRNA from alignment at P-wetherbeei_contig54997:18..455+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig54997.1.1 ID=mRNA_P-wetherbeei_contig54997.1.1|Name=mRNA_P-wetherbeei_contig54997.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=438bp|location=Sequence derived from alignment at P-wetherbeei_contig54997:18..455+ (Phaeothamnion wetherbeei SAG_119_79)
ACCAACTTCGCGTGGACCGCCGATCCGAACACCGCGTTGGGGGCGGTGAT CGCCATCGATGTCTGGAAGACGACGCCGTTCATGGCGCTCCTCCTGCTGG CGGGCCTGCAGGTGATTCCGTCCGATGTCTACGAGGCCGCCTACGTCGAT GGCGCGTCGAAGTGGCAGCAGTTCTGGCAGATCACGCTGCCGCTGTTGCG ACCGGCGCTGCTGGTGGCGCTGATCTTCCGGACGATGGACTCGTTCCGCG TCTTCGATCTCATCTTCGTGCTGAAGGGCGCGGCGACGGAGACGATGACC GTGGCGGTCTACACGCAGCAGCAGTTGATTCAGGCGAACCGGCTGGGATT CGGGTCGGCGGCGGCCGTCTTCATCTTCCTGTGTATCGGATTGATGGTCC TCGGCTATTCGCGGCTGATCACGGTGGAGGAATCCTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig54997:18..455+

>mRNA_P-wetherbeei_contig54997.1.1 ID=mRNA_P-wetherbeei_contig54997.1.1|Name=mRNA_P-wetherbeei_contig54997.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=438bp|location=Sequence derived from alignment at P-wetherbeei_contig54997:18..455+ (Phaeothamnion wetherbeei SAG_119_79)
ACCAACTTCGCGTGGACCGCCGATCCGAACACCGCGTTGGGGGCGGTGAT
CGCCATCGATGTCTGGAAGACGACGCCGTTCATGGCGCTCCTCCTGCTGG
CGGGCCTGCAGGTGATTCCGTCCGATGTCTACGAGGCCGCCTACGTCGAT
GGCGCGTCGAAGTGGCAGCAGTTCTGGCAGATCACGCTGCCGCTGTTGCG
ACCGGCGCTGCTGGTGGCGCTGATCTTCCGGACGATGGACTCGTTCCGCG
TCTTCGATCTCATCTTCGTGCTGAAGGGCGCGGCGACGGAGACGATGACC
GTGGCGGTCTACACGCAGCAGCAGTTGATTCAGGCGAACCGGCTGGGATT
CGGGTCGGCGGCGGCCGTCTTCATCTTCCTGTGTATCGGATTGATGGTCC
TCGGCTATTCGCGGCTGATCACGGTGGAGGAATCCTGA
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