mRNA_P-wetherbeei_contig54981.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig54981.1.1
Unique NamemRNA_P-wetherbeei_contig54981.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig54981.1.1 vs. uniprot
Match: UPI001FF8A9CF (hypothetical protein n=1 Tax=Bradyrhizobium sp. 197 TaxID=2782663 RepID=UPI001FF8A9CF)

HSP 1 Score: 135 bits (340), Expect = 1.530e-39
Identity = 61/86 (70.93%), Postives = 71/86 (82.56%), Query Frame = 1 
Query:    1 MDWWTFLGTGCLGLTIGWLTYEFIRRAQSLGLKAVCTIATIVGGSAALGVWRFSQEAPLPREANAYFIGIFISVFILGLLRYEPAE 258
            +D WTFLGTGCLGLTIGWL  EFIRRA SLG+KAVCT+A I+ GS AL VW+ SQ+  LPREANAYFIG+F++V  LG LRYEP +
Sbjct:   24 LDGWTFLGTGCLGLTIGWLIAEFIRRAPSLGIKAVCTLAAILSGSTALSVWQVSQKTGLPREANAYFIGVFLAVVFLGALRYEPKD 109
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig54981.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
UPI001FF8A9CF1.530e-3970.93hypothetical protein n=1 Tax=Bradyrhizobium sp. 19... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig54981contigP-wetherbeei_contig54981:70..330 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog436229.JOEH01000011_gene5386
Model size261
Max annot lvl201174|Actinobacteria
Hectar predicted targeting categorysignal anchor
Exons1
Evalue0.00036
EggNOG OGs2AM5J@1|root,31BZY@2|Bacteria,2GY5E@201174|Actinobacteria
Cds size261
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186819.970929-CDS-P-wetherbeei_contig54981:69..3301683186819.970929-CDS-P-wetherbeei_contig54981:69..330Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig54981 70..330 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig54981.1.1prot_P-wetherbeei_contig54981.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig54981 70..330 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig54981.1.1

>prot_P-wetherbeei_contig54981.1.1 ID=prot_P-wetherbeei_contig54981.1.1|Name=mRNA_P-wetherbeei_contig54981.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=87bp
MDWWTFLGTGCLGLTIGWLTYEFIRRAQSLGLKAVCTIATIVGGSAALGV
WRFSQEAPLPREANAYFIGIFISVFILGLLRYEPAE*
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mRNA from alignment at P-wetherbeei_contig54981:70..330-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig54981.1.1 ID=mRNA_P-wetherbeei_contig54981.1.1|Name=mRNA_P-wetherbeei_contig54981.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=261bp|location=Sequence derived from alignment at P-wetherbeei_contig54981:70..330- (Phaeothamnion wetherbeei SAG_119_79)
ATGGACTGGTGGACATTTCTAGGCACGGGGTGCTTAGGGCTGACGATCGG
CTGGCTCACATATGAATTTATTCGCCGCGCTCAGAGCCTCGGCTTAAAGG
CGGTTTGCACAATAGCCACCATCGTCGGTGGAAGTGCAGCGCTCGGTGTT
TGGCGGTTCTCGCAAGAGGCGCCGCTGCCACGTGAGGCTAATGCATACTT
CATCGGCATATTTATTTCAGTCTTCATTCTTGGGCTTCTTCGGTACGAGC
CAGCGGAATGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig54981:70..330-

>mRNA_P-wetherbeei_contig54981.1.1 ID=mRNA_P-wetherbeei_contig54981.1.1|Name=mRNA_P-wetherbeei_contig54981.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=261bp|location=Sequence derived from alignment at P-wetherbeei_contig54981:70..330- (Phaeothamnion wetherbeei SAG_119_79)
ATGGACTGGTGGACATTTCTAGGCACGGGGTGCTTAGGGCTGACGATCGG
CTGGCTCACATATGAATTTATTCGCCGCGCTCAGAGCCTCGGCTTAAAGG
CGGTTTGCACAATAGCCACCATCGTCGGTGGAAGTGCAGCGCTCGGTGTT
TGGCGGTTCTCGCAAGAGGCGCCGCTGCCACGTGAGGCTAATGCATACTT
CATCGGCATATTTATTTCAGTCTTCATTCTTGGGCTTCTTCGGTACGAGC
CAGCGGAATGA
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